data_6NVJ # _model_server_result.job_id QYqLtJ0gmqr0rE7UQPkHbw _model_server_result.datetime_utc '2024-11-22 08:00:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":805}' # _entry.id 6NVJ # _exptl.entry_id 6NVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 495.331 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-3-fluorophenyl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NVJ _cell.length_a 63.04 _cell.length_b 63.04 _cell.length_c 181.953 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 104 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 552 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C22 _struct_conn.ptnr2_label_comp_id XL5 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id XL5 _struct_conn.ptnr2_auth_seq_id 805 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.841 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H21 Cl2 F N4 O4' _chem_comp.formula_weight 495.331 _chem_comp.id XL5 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-3-fluorophenyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 XL5 sing 380 n n C21 C20 XL5 sing 381 n n O4 C20 XL5 doub 382 n n C20 N4 XL5 sing 383 n n CL1 C2 XL5 sing 384 n n C7 O1 XL5 sing 385 n n N4 C15 XL5 sing 386 n n O1 C1 XL5 sing 387 n n C13 N2 XL5 doub 388 n y C13 C10 XL5 sing 389 n y C1 C2 XL5 doub 390 n y C1 C6 XL5 sing 391 n y C2 C3 XL5 sing 392 n y N2 C12 XL5 sing 393 n y O3 C10 XL5 sing 394 n n O3 C9 XL5 sing 395 n n C10 C11 XL5 doub 396 n y C15 C16 XL5 doub 397 n y C15 C14 XL5 sing 398 n y C12 N3 XL5 sing 399 n n C12 N1 XL5 doub 400 n y N3 C14 XL5 sing 401 n n C11 N1 XL5 sing 402 n y C6 C5 XL5 doub 403 n y C9 C3 XL5 sing 404 n n C3 C4 XL5 doub 405 n y C16 C17 XL5 sing 406 n y C14 C19 XL5 doub 407 n y C5 C4 XL5 sing 408 n y C5 O2 XL5 sing 409 n n C4 CL2 XL5 sing 410 n n C8 O2 XL5 sing 411 n n C17 C18 XL5 doub 412 n y C19 C18 XL5 sing 413 n y C19 F1 XL5 sing 414 n n C6 H1 XL5 sing 415 n n C7 H2 XL5 sing 416 n n C7 H3 XL5 sing 417 n n C7 H4 XL5 sing 418 n n C8 H5 XL5 sing 419 n n C8 H6 XL5 sing 420 n n C8 H7 XL5 sing 421 n n C9 H8 XL5 sing 422 n n C9 H9 XL5 sing 423 n n C11 H10 XL5 sing 424 n n C13 H11 XL5 sing 425 n n N3 H12 XL5 sing 426 n n C16 H13 XL5 sing 427 n n C17 H14 XL5 sing 428 n n C18 H15 XL5 sing 429 n n N4 H16 XL5 sing 430 n n C21 H17 XL5 sing 431 n n C21 H18 XL5 sing 432 n n C22 H19 XL5 sing 433 n n C22 H20 XL5 sing 434 n n C22 H21 XL5 sing 435 n n # _atom_sites.entry_id 6NVJ _atom_sites.fract_transf_matrix[1][1] 0.015863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 801 802 SO4 SO4 . C 2 SO4 A 1 802 803 SO4 SO4 . D 2 SO4 A 1 803 804 SO4 SO4 . E 2 SO4 A 1 804 805 SO4 SO4 . F 3 XL5 A 1 805 801 XL5 XL5 . G 4 HOH A 1 901 901 HOH HOH . G 4 HOH A 2 902 902 HOH HOH . G 4 HOH A 3 903 903 HOH HOH . G 4 HOH A 4 904 904 HOH HOH . G 4 HOH A 5 905 905 HOH HOH . G 4 HOH A 6 906 906 HOH HOH . G 4 HOH A 7 907 907 HOH HOH . G 4 HOH A 8 908 908 HOH HOH . G 4 HOH A 9 909 909 HOH HOH . G 4 HOH A 10 910 910 HOH HOH . G 4 HOH A 11 911 911 HOH HOH . G 4 HOH A 12 912 912 HOH HOH . G 4 HOH A 13 913 913 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XL5 . . . F 3 20.938 -2.8 -8.621 1 43.42 ? C1 XL5 805 A 1 HETATM 2 C C2 XL5 . . . F 3 19.744 -3.492 -8.609 1 47.78 ? C2 XL5 805 A 1 HETATM 3 C C3 XL5 . . . F 3 19.542 -4.593 -7.774 1 49.05 ? C3 XL5 805 A 1 HETATM 4 C C4 XL5 . . . F 3 20.585 -5.004 -6.963 1 49.93 ? C4 XL5 805 A 1 HETATM 5 C C5 XL5 . . . F 3 21.796 -4.315 -6.981 1 51.18 ? C5 XL5 805 A 1 HETATM 6 C C6 XL5 . . . F 3 21.974 -3.225 -7.812 1 49.3 ? C6 XL5 805 A 1 HETATM 7 O O1 XL5 . . . F 3 20.978 -1.744 -9.478 1 47.24 ? O1 XL5 805 A 1 HETATM 8 O O2 XL5 . . . F 3 22.815 -4.706 -6.18 1 48.42 ? O2 XL5 805 A 1 HETATM 9 C C7 XL5 . . . F 3 22.002 -0.767 -9.349 1 45.65 ? C7 XL5 805 A 1 HETATM 10 C C8 XL5 . . . F 3 24.082 -4.855 -6.795 1 52.68 ? C8 XL5 805 A 1 HETATM 11 CL CL1 XL5 . . . F 3 18.481 -2.928 -9.656 1 50.91 ? CL1 XL5 805 A 1 HETATM 12 CL CL2 XL5 . . . F 3 20.359 -6.372 -5.91 1 47.65 ? CL2 XL5 805 A 1 HETATM 13 C C9 XL5 . . . F 3 18.246 -5.347 -7.784 1 46.32 ? C9 XL5 805 A 1 HETATM 14 O O3 XL5 . . . F 3 18.452 -6.535 -8.563 1 42.44 ? O3 XL5 805 A 1 HETATM 15 C C10 XL5 . . . F 3 17.628 -7.61 -8.354 1 44.97 ? C10 XL5 805 A 1 HETATM 16 C C11 XL5 . . . F 3 16.333 -7.505 -7.868 1 44.09 ? C11 XL5 805 A 1 HETATM 17 N N1 XL5 . . . F 3 15.563 -8.581 -7.73 1 42.84 ? N1 XL5 805 A 1 HETATM 18 C C12 XL5 . . . F 3 16.103 -9.764 -8.079 1 42.23 ? C12 XL5 805 A 1 HETATM 19 N N2 XL5 . . . F 3 17.344 -9.948 -8.556 1 46.06 ? N2 XL5 805 A 1 HETATM 20 C C13 XL5 . . . F 3 18.105 -8.856 -8.687 1 44.25 ? C13 XL5 805 A 1 HETATM 21 N N3 XL5 . . . F 3 15.345 -10.876 -7.926 1 52.68 ? N3 XL5 805 A 1 HETATM 22 C C14 XL5 . . . F 3 14.035 -10.96 -7.428 1 57.42 ? C14 XL5 805 A 1 HETATM 23 C C15 XL5 . . . F 3 13.038 -11.491 -8.248 1 56.83 ? C15 XL5 805 A 1 HETATM 24 C C16 XL5 . . . F 3 11.72 -11.579 -7.717 1 52.95 ? C16 XL5 805 A 1 HETATM 25 C C17 XL5 . . . F 3 11.443 -11.098 -6.447 1 50.33 ? C17 XL5 805 A 1 HETATM 26 C C18 XL5 . . . F 3 12.438 -10.564 -5.657 1 53.35 ? C18 XL5 805 A 1 HETATM 27 C C19 XL5 . . . F 3 13.716 -10.501 -6.159 1 54.43 ? C19 XL5 805 A 1 HETATM 28 N N4 XL5 . . . F 3 13.439 -12.031 -9.493 1 52.04 ? N4 XL5 805 A 1 HETATM 29 C C20 XL5 . . . F 3 12.769 -12.037 -10.655 1 48.11 ? C20 XL5 805 A 1 HETATM 30 C C21 XL5 . . . F 3 13.494 -12.745 -11.78 1 50.4 ? C21 XL5 805 A 1 HETATM 31 C C22 XL5 . . . F 3 14.802 -12.099 -12.17 1 51.46 ? C22 XL5 805 A 1 HETATM 32 O O4 XL5 . . . F 3 11.692 -11.506 -10.797 1 56.17 ? O4 XL5 805 A 1 HETATM 33 F F1 XL5 . . . F 3 14.697 -9.967 -5.399 1 53.91 ? F1 XL5 805 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #