data_6NVL # _model_server_result.job_id CE59JetqZEpbD7BAcEHRbw _model_server_result.datetime_utc '2024-12-23 05:15:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":802}' # _entry.id 6NVL # _exptl.entry_id 6NVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.367 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-3-methylphenyl]propanamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.6 _cell.angle_gamma 90 _cell.entry_id 6NVL _cell.length_a 93.331 _cell.length_b 83.701 _cell.length_c 102.604 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,N 1 1 B,G,H,O 2 1 C,I,P 3 1 D,J,K,L,M,Q 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 I N N ? 3 M N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 32 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 488 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C23 _struct_conn.ptnr2_label_comp_id XL6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id XL6 _struct_conn.ptnr2_auth_seq_id 802 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.828 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H24 Cl2 N4 O4' _chem_comp.formula_weight 491.367 _chem_comp.id XL6 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-3-methylphenyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C19 XL6 sing 380 n n C18 C19 XL6 doub 381 n y C18 C17 XL6 sing 382 n y CL2 C4 XL6 sing 383 n n C19 C14 XL6 sing 384 n y O2 C8 XL6 sing 385 n n O2 C5 XL6 sing 386 n n C17 C16 XL6 doub 387 n y C5 C4 XL6 doub 388 n y C5 C6 XL6 sing 389 n y C4 C3 XL6 sing 390 n y C14 N3 XL6 sing 391 n n C14 C15 XL6 doub 392 n y N2 C13 XL6 doub 393 n y N2 C12 XL6 sing 394 n y C6 C1 XL6 doub 395 n y C9 C3 XL6 sing 396 n n C9 O3 XL6 sing 397 n n C3 C2 XL6 doub 398 n y N3 C12 XL6 sing 399 n n C16 C15 XL6 sing 400 n y C13 C10 XL6 sing 401 n y C12 N1 XL6 doub 402 n y C15 N4 XL6 sing 403 n n C10 O3 XL6 sing 404 n n C10 C11 XL6 doub 405 n y N1 C11 XL6 sing 406 n y C2 C1 XL6 sing 407 n y C2 CL1 XL6 sing 408 n n C1 O1 XL6 sing 409 n n O1 C7 XL6 sing 410 n n N4 C21 XL6 sing 411 n n O4 C21 XL6 doub 412 n n C21 C22 XL6 sing 413 n n C22 C23 XL6 sing 414 n n C6 H1 XL6 sing 415 n n C7 H2 XL6 sing 416 n n C7 H3 XL6 sing 417 n n C7 H4 XL6 sing 418 n n C8 H5 XL6 sing 419 n n C8 H6 XL6 sing 420 n n C8 H7 XL6 sing 421 n n C9 H8 XL6 sing 422 n n C9 H9 XL6 sing 423 n n C11 H10 XL6 sing 424 n n C13 H11 XL6 sing 425 n n N3 H12 XL6 sing 426 n n C16 H13 XL6 sing 427 n n C17 H14 XL6 sing 428 n n C18 H15 XL6 sing 429 n n C20 H16 XL6 sing 430 n n C20 H17 XL6 sing 431 n n C20 H18 XL6 sing 432 n n N4 H19 XL6 sing 433 n n C22 H20 XL6 sing 434 n n C22 H21 XL6 sing 435 n n C23 H22 XL6 sing 436 n n C23 H23 XL6 sing 437 n n C23 H24 XL6 sing 438 n n # _atom_sites.entry_id 6NVL _atom_sites.fract_transf_matrix[1][1] 0.010715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004681 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 801 802 SO4 SO4 . F 3 XL6 A 1 802 1 XL6 XL6 . G 2 SO4 B 1 801 802 SO4 SO4 . H 3 XL6 B 1 802 3 XL6 XL6 . I 3 XL6 C 1 801 2 XL6 XL6 . J 2 SO4 D 1 801 802 SO4 SO4 . K 2 SO4 D 1 802 803 SO4 SO4 . L 2 SO4 D 1 803 804 SO4 SO4 . M 3 XL6 D 1 804 4 XL6 XL6 . N 4 HOH A 1 901 901 HOH HOH . N 4 HOH A 2 902 903 HOH HOH . N 4 HOH A 3 903 902 HOH HOH . N 4 HOH A 4 904 905 HOH HOH . N 4 HOH A 5 905 904 HOH HOH . N 4 HOH A 6 906 907 HOH HOH . N 4 HOH A 7 907 906 HOH HOH . N 4 HOH A 8 908 908 HOH HOH . N 4 HOH A 9 909 909 HOH HOH . N 4 HOH A 10 910 910 HOH HOH . N 4 HOH A 11 911 911 HOH HOH . O 4 HOH B 1 901 911 HOH HOH . O 4 HOH B 2 902 909 HOH HOH . O 4 HOH B 3 903 901 HOH HOH . O 4 HOH B 4 904 902 HOH HOH . O 4 HOH B 5 905 905 HOH HOH . O 4 HOH B 6 906 904 HOH HOH . O 4 HOH B 7 907 907 HOH HOH . O 4 HOH B 8 908 903 HOH HOH . O 4 HOH B 9 909 906 HOH HOH . O 4 HOH B 10 910 908 HOH HOH . O 4 HOH B 11 911 910 HOH HOH . O 4 HOH B 12 912 912 HOH HOH . O 4 HOH B 13 913 915 HOH HOH . O 4 HOH B 14 914 913 HOH HOH . O 4 HOH B 15 915 914 HOH HOH . O 4 HOH B 16 916 916 HOH HOH . P 4 HOH C 1 901 901 HOH HOH . P 4 HOH C 2 902 902 HOH HOH . P 4 HOH C 3 903 904 HOH HOH . P 4 HOH C 4 904 905 HOH HOH . P 4 HOH C 5 905 903 HOH HOH . Q 4 HOH D 1 901 901 HOH HOH . Q 4 HOH D 2 902 902 HOH HOH . Q 4 HOH D 3 903 904 HOH HOH . Q 4 HOH D 4 904 903 HOH HOH . Q 4 HOH D 5 905 905 HOH HOH . Q 4 HOH D 6 906 907 HOH HOH . Q 4 HOH D 7 907 908 HOH HOH . Q 4 HOH D 8 908 906 HOH HOH . Q 4 HOH D 9 909 909 HOH HOH . Q 4 HOH D 10 910 910 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XL6 . . . F 3 73.354 16.15 42.18 1 43.41 ? C1 XL6 802 A 1 HETATM 2 C C2 XL6 . . . F 3 73.43 16.769 43.426 1 42.61 ? C2 XL6 802 A 1 HETATM 3 C C3 XL6 . . . F 3 72.571 17.805 43.783 1 40.38 ? C3 XL6 802 A 1 HETATM 4 C C4 XL6 . . . F 3 71.631 18.222 42.836 1 40.63 ? C4 XL6 802 A 1 HETATM 5 C C5 XL6 . . . F 3 71.549 17.624 41.581 1 40.01 ? C5 XL6 802 A 1 HETATM 6 C C6 XL6 . . . F 3 72.411 16.588 41.263 1 41.31 ? C6 XL6 802 A 1 HETATM 7 O O1 XL6 . . . F 3 74.24 15.144 41.912 1 44.25 ? O1 XL6 802 A 1 HETATM 8 O O2 XL6 . . . F 3 70.591 18.092 40.729 1 38.37 ? O2 XL6 802 A 1 HETATM 9 C C7 XL6 . . . F 3 73.876 14.142 40.965 1 43.38 ? C7 XL6 802 A 1 HETATM 10 C C8 XL6 . . . F 3 70.704 17.824 39.335 1 37.15 ? C8 XL6 802 A 1 HETATM 11 CL CL1 XL6 . . . F 3 74.62 16.229 44.562 1 45.12 ? CL1 XL6 802 A 1 HETATM 12 CL CL2 XL6 . . . F 3 70.52 19.497 43.221 1 45.67 ? CL2 XL6 802 A 1 HETATM 13 C C9 XL6 . . . F 3 72.675 18.453 45.138 1 38.59 ? C9 XL6 802 A 1 HETATM 14 O O3 XL6 . . . F 3 71.928 17.7 46.105 1 36.88 ? O3 XL6 802 A 1 HETATM 15 C C10 XL6 . . . F 3 72.226 17.83 47.441 1 36.59 ? C10 XL6 802 A 1 HETATM 16 C C11 XL6 . . . F 3 72.966 18.885 47.944 1 36.57 ? C11 XL6 802 A 1 HETATM 17 N N1 XL6 . . . F 3 73.237 18.986 49.247 1 36.47 ? N1 XL6 802 A 1 HETATM 18 C C12 XL6 . . . F 3 72.74 18.022 50.051 1 37.51 ? C12 XL6 802 A 1 HETATM 19 N N2 XL6 . . . F 3 72.014 16.96 49.635 1 35.97 ? N2 XL6 802 A 1 HETATM 20 C C13 XL6 . . . F 3 71.755 16.879 48.328 1 35.82 ? C13 XL6 802 A 1 HETATM 21 N N3 XL6 . . . F 3 73.013 18.089 51.386 1 39.04 ? N3 XL6 802 A 1 HETATM 22 C C14 XL6 . . . F 3 73.446 19.153 52.216 1 41.42 ? C14 XL6 802 A 1 HETATM 23 C C15 XL6 . . . F 3 74.609 19.912 51.945 1 45.56 ? C15 XL6 802 A 1 HETATM 24 C C16 XL6 . . . F 3 74.976 20.951 52.831 1 43.35 ? C16 XL6 802 A 1 HETATM 25 C C17 XL6 . . . F 3 74.236 21.195 53.955 1 42.94 ? C17 XL6 802 A 1 HETATM 26 C C18 XL6 . . . F 3 73.113 20.439 54.221 1 42.94 ? C18 XL6 802 A 1 HETATM 27 C C19 XL6 . . . F 3 72.707 19.418 53.375 1 43.6 ? C19 XL6 802 A 1 HETATM 28 C C20 XL6 . . . F 3 71.474 18.624 53.718 1 45.62 ? C20 XL6 802 A 1 HETATM 29 N N4 XL6 . . . F 3 75.386 19.711 50.781 1 48.96 ? N4 XL6 802 A 1 HETATM 30 C C21 XL6 . . . F 3 76.736 19.646 50.711 1 55.36 ? C21 XL6 802 A 1 HETATM 31 C C22 XL6 . . . F 3 77.265 19.466 49.306 1 60.56 ? C22 XL6 802 A 1 HETATM 32 C C23 XL6 . . . F 3 77.162 20.711 48.474 1 64.64 ? C23 XL6 802 A 1 HETATM 33 O O4 XL6 . . . F 3 77.472 19.722 51.692 1 55.24 ? O4 XL6 802 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 33 #