data_6NVL
#
_model_server_result.job_id            7hXoDSvXR6DrU48d89Y-dg 
_model_server_result.datetime_utc      '2024-10-11 01:25:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nvl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":802}' 
#
_entry.id    6NVL 
#
_exptl.entry_id    6NVL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              491.367 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-3-methylphenyl]propanamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.6 
_cell.angle_gamma         90 
_cell.entry_id            6NVL 
_cell.length_a            93.331 
_cell.length_b            83.701 
_cell.length_c            102.604 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NVL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,N 1 1 
B,G,H,O 2 1 
C,I,P 3 1 
D,J,K,L,M,Q 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 I N N 
? 3 M N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             32 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              488 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            F 
_struct_conn.ptnr2_label_atom_id            C23 
_struct_conn.ptnr2_label_comp_id            XL6 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             XL6 
_struct_conn.ptnr2_auth_seq_id              802 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.828 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C23 H24 Cl2 N4 O4' 
_chem_comp.formula_weight    491.367 
_chem_comp.id                XL6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-3-methylphenyl]propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 C19 XL6 sing 380 n n 
C18 C19 XL6 doub 381 n y 
C18 C17 XL6 sing 382 n y 
CL2 C4 XL6 sing 383 n n 
C19 C14 XL6 sing 384 n y 
O2 C8 XL6 sing 385 n n 
O2 C5 XL6 sing 386 n n 
C17 C16 XL6 doub 387 n y 
C5 C4 XL6 doub 388 n y 
C5 C6 XL6 sing 389 n y 
C4 C3 XL6 sing 390 n y 
C14 N3 XL6 sing 391 n n 
C14 C15 XL6 doub 392 n y 
N2 C13 XL6 doub 393 n y 
N2 C12 XL6 sing 394 n y 
C6 C1 XL6 doub 395 n y 
C9 C3 XL6 sing 396 n n 
C9 O3 XL6 sing 397 n n 
C3 C2 XL6 doub 398 n y 
N3 C12 XL6 sing 399 n n 
C16 C15 XL6 sing 400 n y 
C13 C10 XL6 sing 401 n y 
C12 N1 XL6 doub 402 n y 
C15 N4 XL6 sing 403 n n 
C10 O3 XL6 sing 404 n n 
C10 C11 XL6 doub 405 n y 
N1 C11 XL6 sing 406 n y 
C2 C1 XL6 sing 407 n y 
C2 CL1 XL6 sing 408 n n 
C1 O1 XL6 sing 409 n n 
O1 C7 XL6 sing 410 n n 
N4 C21 XL6 sing 411 n n 
O4 C21 XL6 doub 412 n n 
C21 C22 XL6 sing 413 n n 
C22 C23 XL6 sing 414 n n 
C6 H1 XL6 sing 415 n n 
C7 H2 XL6 sing 416 n n 
C7 H3 XL6 sing 417 n n 
C7 H4 XL6 sing 418 n n 
C8 H5 XL6 sing 419 n n 
C8 H6 XL6 sing 420 n n 
C8 H7 XL6 sing 421 n n 
C9 H8 XL6 sing 422 n n 
C9 H9 XL6 sing 423 n n 
C11 H10 XL6 sing 424 n n 
C13 H11 XL6 sing 425 n n 
N3 H12 XL6 sing 426 n n 
C16 H13 XL6 sing 427 n n 
C17 H14 XL6 sing 428 n n 
C18 H15 XL6 sing 429 n n 
C20 H16 XL6 sing 430 n n 
C20 H17 XL6 sing 431 n n 
C20 H18 XL6 sing 432 n n 
N4 H19 XL6 sing 433 n n 
C22 H20 XL6 sing 434 n n 
C22 H21 XL6 sing 435 n n 
C23 H22 XL6 sing 436 n n 
C23 H23 XL6 sing 437 n n 
C23 H24 XL6 sing 438 n n 
#
_atom_sites.entry_id                     6NVL 
_atom_sites.fract_transf_matrix[1][1]    0.010715 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004681 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011947 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010636 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 801 802 SO4 SO4 . 
F 3 XL6 A 1 802 1 XL6 XL6 . 
G 2 SO4 B 1 801 802 SO4 SO4 . 
H 3 XL6 B 1 802 3 XL6 XL6 . 
I 3 XL6 C 1 801 2 XL6 XL6 . 
J 2 SO4 D 1 801 802 SO4 SO4 . 
K 2 SO4 D 1 802 803 SO4 SO4 . 
L 2 SO4 D 1 803 804 SO4 SO4 . 
M 3 XL6 D 1 804 4 XL6 XL6 . 
N 4 HOH A 1 901 901 HOH HOH . 
N 4 HOH A 2 902 903 HOH HOH . 
N 4 HOH A 3 903 902 HOH HOH . 
N 4 HOH A 4 904 905 HOH HOH . 
N 4 HOH A 5 905 904 HOH HOH . 
N 4 HOH A 6 906 907 HOH HOH . 
N 4 HOH A 7 907 906 HOH HOH . 
N 4 HOH A 8 908 908 HOH HOH . 
N 4 HOH A 9 909 909 HOH HOH . 
N 4 HOH A 10 910 910 HOH HOH . 
N 4 HOH A 11 911 911 HOH HOH . 
O 4 HOH B 1 901 911 HOH HOH . 
O 4 HOH B 2 902 909 HOH HOH . 
O 4 HOH B 3 903 901 HOH HOH . 
O 4 HOH B 4 904 902 HOH HOH . 
O 4 HOH B 5 905 905 HOH HOH . 
O 4 HOH B 6 906 904 HOH HOH . 
O 4 HOH B 7 907 907 HOH HOH . 
O 4 HOH B 8 908 903 HOH HOH . 
O 4 HOH B 9 909 906 HOH HOH . 
O 4 HOH B 10 910 908 HOH HOH . 
O 4 HOH B 11 911 910 HOH HOH . 
O 4 HOH B 12 912 912 HOH HOH . 
O 4 HOH B 13 913 915 HOH HOH . 
O 4 HOH B 14 914 913 HOH HOH . 
O 4 HOH B 15 915 914 HOH HOH . 
O 4 HOH B 16 916 916 HOH HOH . 
P 4 HOH C 1 901 901 HOH HOH . 
P 4 HOH C 2 902 902 HOH HOH . 
P 4 HOH C 3 903 904 HOH HOH . 
P 4 HOH C 4 904 905 HOH HOH . 
P 4 HOH C 5 905 903 HOH HOH . 
Q 4 HOH D 1 901 901 HOH HOH . 
Q 4 HOH D 2 902 902 HOH HOH . 
Q 4 HOH D 3 903 904 HOH HOH . 
Q 4 HOH D 4 904 903 HOH HOH . 
Q 4 HOH D 5 905 905 HOH HOH . 
Q 4 HOH D 6 906 907 HOH HOH . 
Q 4 HOH D 7 907 908 HOH HOH . 
Q 4 HOH D 8 908 906 HOH HOH . 
Q 4 HOH D 9 909 909 HOH HOH . 
Q 4 HOH D 10 910 910 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 XL6 . . . H 3 128.405 26.051 62.132 1 52.02 ? C1 XL6 802 B 1 
HETATM 2 C C2 XL6 . . . H 3 128.404 25.635 60.804 1 52.25 ? C2 XL6 802 B 1 
HETATM 3 C C3 XL6 . . . H 3 129.37 26.059 59.903 1 50.59 ? C3 XL6 802 B 1 
HETATM 4 C C4 XL6 . . . H 3 130.351 26.932 60.37 1 52.87 ? C4 XL6 802 B 1 
HETATM 5 C C5 XL6 . . . H 3 130.368 27.361 61.697 1 53.2 ? C5 XL6 802 B 1 
HETATM 6 C C6 XL6 . . . H 3 129.39 26.915 62.573 1 53.04 ? C6 XL6 802 B 1 
HETATM 7 O O1 XL6 . . . H 3 127.433 25.592 62.971 1 50.69 ? O1 XL6 802 B 1 
HETATM 8 O O2 XL6 . . . H 3 131.361 28.204 62.099 1 52.2 ? O2 XL6 802 B 1 
HETATM 9 C C7 XL6 . . . H 3 127.828 25.186 64.28 1 50.17 ? C7 XL6 802 B 1 
HETATM 10 C C8 XL6 . . . H 3 131.146 28.993 63.265 1 52.07 ? C8 XL6 802 B 1 
HETATM 11 CL CL1 XL6 . . . H 3 127.169 24.555 60.258 1 56.49 ? CL1 XL6 802 B 1 
HETATM 12 CL CL2 XL6 . . . H 3 131.583 27.485 59.284 1 57.62 ? CL2 XL6 802 B 1 
HETATM 13 C C9 XL6 . . . H 3 129.346 25.588 58.476 1 47.99 ? C9 XL6 802 B 1 
HETATM 14 O O3 XL6 . . . H 3 129.892 24.259 58.409 1 46.51 ? O3 XL6 802 B 1 
HETATM 15 C C10 XL6 . . . H 3 129.529 23.427 57.374 1 43.68 ? C10 XL6 802 B 1 
HETATM 16 C C11 XL6 . . . H 3 129.681 22.061 57.526 1 42.1 ? C11 XL6 802 B 1 
HETATM 17 N N1 XL6 . . . H 3 129.345 21.212 56.551 1 41 ? N1 XL6 802 B 1 
HETATM 18 C C12 XL6 . . . H 3 128.855 21.752 55.414 1 41.66 ? C12 XL6 802 B 1 
HETATM 19 N N2 XL6 . . . H 3 128.678 23.069 55.19 1 41.28 ? N2 XL6 802 B 1 
HETATM 20 C C13 XL6 . . . H 3 129.025 23.899 56.175 1 42.57 ? C13 XL6 802 B 1 
HETATM 21 N N3 XL6 . . . H 3 128.497 20.881 54.43 1 43.47 ? N3 XL6 802 B 1 
HETATM 22 C C14 XL6 . . . H 3 128.181 21.072 53.065 1 45.16 ? C14 XL6 802 B 1 
HETATM 23 C C15 XL6 . . . H 3 127.175 21.967 52.639 1 47.04 ? C15 XL6 802 B 1 
HETATM 24 C C16 XL6 . . . H 3 126.913 22.108 51.254 1 46.42 ? C16 XL6 802 B 1 
HETATM 25 C C17 XL6 . . . H 3 127.591 21.342 50.341 1 46.57 ? C17 XL6 802 B 1 
HETATM 26 C C18 XL6 . . . H 3 128.549 20.444 50.77 1 45.62 ? C18 XL6 802 B 1 
HETATM 27 C C19 XL6 . . . H 3 128.855 20.291 52.116 1 45.41 ? C19 XL6 802 B 1 
HETATM 28 C C20 XL6 . . . H 3 129.912 19.3 52.518 1 44.79 ? C20 XL6 802 B 1 
HETATM 29 N N4 XL6 . . . H 3 126.48 22.808 53.538 1 48.99 ? N4 XL6 802 B 1 
HETATM 30 C C21 XL6 . . . H 3 125.138 22.928 53.676 1 48.32 ? C21 XL6 802 B 1 
HETATM 31 C C22 XL6 . . . H 3 124.722 23.992 54.668 1 46.02 ? C22 XL6 802 B 1 
HETATM 32 C C23 XL6 . . . H 3 125.173 25.374 54.27 1 45.49 ? C23 XL6 802 B 1 
HETATM 33 O O4 XL6 . . . H 3 124.329 22.237 53.064 1 47.71 ? O4 XL6 802 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           33 
#