data_6NVQ # _model_server_result.job_id koswljtZdEHYJMhD7VusBA _model_server_result.datetime_utc '2024-12-26 17:01:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6NVQ # _exptl.entry_id 6NVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NVQ _cell.length_a 70.453 _cell.length_b 128.929 _cell.length_c 45.222 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6NVQ _atom_sites.fract_transf_matrix[1][1] 0.014194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL C 1 401 401 GOL GOL . D 3 GOL C 1 402 501 GOL GOL . E 4 HOH C 1 501 42 HOH HOH . E 4 HOH C 2 502 127 HOH HOH . E 4 HOH C 3 503 34 HOH HOH . E 4 HOH C 4 504 18 HOH HOH . E 4 HOH C 5 505 72 HOH HOH . E 4 HOH C 6 506 113 HOH HOH . E 4 HOH C 7 507 4 HOH HOH . E 4 HOH C 8 508 197 HOH HOH . E 4 HOH C 9 509 21 HOH HOH . E 4 HOH C 10 510 192 HOH HOH . E 4 HOH C 11 511 181 HOH HOH . E 4 HOH C 12 512 10 HOH HOH . E 4 HOH C 13 513 35 HOH HOH . E 4 HOH C 14 514 38 HOH HOH . E 4 HOH C 15 515 5 HOH HOH . E 4 HOH C 16 516 2 HOH HOH . E 4 HOH C 17 517 134 HOH HOH . E 4 HOH C 18 518 168 HOH HOH . E 4 HOH C 19 519 133 HOH HOH . E 4 HOH C 20 520 76 HOH HOH . E 4 HOH C 21 521 13 HOH HOH . E 4 HOH C 22 522 95 HOH HOH . E 4 HOH C 23 523 175 HOH HOH . E 4 HOH C 24 524 43 HOH HOH . E 4 HOH C 25 525 64 HOH HOH . E 4 HOH C 26 526 163 HOH HOH . E 4 HOH C 27 527 118 HOH HOH . E 4 HOH C 28 528 22 HOH HOH . E 4 HOH C 29 529 26 HOH HOH . E 4 HOH C 30 530 24 HOH HOH . E 4 HOH C 31 531 32 HOH HOH . E 4 HOH C 32 532 33 HOH HOH . E 4 HOH C 33 533 20 HOH HOH . E 4 HOH C 34 534 98 HOH HOH . E 4 HOH C 35 535 101 HOH HOH . E 4 HOH C 36 536 30 HOH HOH . E 4 HOH C 37 537 196 HOH HOH . E 4 HOH C 38 538 40 HOH HOH . E 4 HOH C 39 539 117 HOH HOH . E 4 HOH C 40 540 125 HOH HOH . E 4 HOH C 41 541 27 HOH HOH . E 4 HOH C 42 542 39 HOH HOH . E 4 HOH C 43 543 184 HOH HOH . E 4 HOH C 44 544 119 HOH HOH . E 4 HOH C 45 545 176 HOH HOH . E 4 HOH C 46 546 100 HOH HOH . E 4 HOH C 47 547 70 HOH HOH . E 4 HOH C 48 548 3 HOH HOH . E 4 HOH C 49 549 7 HOH HOH . E 4 HOH C 50 550 158 HOH HOH . E 4 HOH C 51 551 147 HOH HOH . E 4 HOH C 52 552 198 HOH HOH . E 4 HOH C 53 553 62 HOH HOH . E 4 HOH C 54 554 31 HOH HOH . E 4 HOH C 55 555 179 HOH HOH . E 4 HOH C 56 556 82 HOH HOH . E 4 HOH C 57 557 170 HOH HOH . E 4 HOH C 58 558 194 HOH HOH . E 4 HOH C 59 559 8 HOH HOH . E 4 HOH C 60 560 104 HOH HOH . E 4 HOH C 61 561 16 HOH HOH . E 4 HOH C 62 562 11 HOH HOH . E 4 HOH C 63 563 185 HOH HOH . E 4 HOH C 64 564 86 HOH HOH . E 4 HOH C 65 565 29 HOH HOH . E 4 HOH C 66 566 139 HOH HOH . E 4 HOH C 67 567 66 HOH HOH . F 4 HOH B 1 101 195 HOH HOH . F 4 HOH B 2 102 199 HOH HOH . F 4 HOH B 3 103 77 HOH HOH . F 4 HOH B 4 104 17 HOH HOH . F 4 HOH B 5 105 9 HOH HOH . F 4 HOH B 6 106 105 HOH HOH . F 4 HOH B 7 107 60 HOH HOH . F 4 HOH B 8 108 85 HOH HOH . F 4 HOH B 9 109 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 10.389 0.307 21.552 1 91.33 ? C1 GOL 401 C 1 HETATM 2 O O1 GOL . . . C 3 9.373 0.077 22.524 1 92.12 ? O1 GOL 401 C 1 HETATM 3 C C2 GOL . . . C 3 10.022 1.45 20.627 1 90.61 ? C2 GOL 401 C 1 HETATM 4 O O2 GOL . . . C 3 10.623 1.249 19.347 1 71.46 ? O2 GOL 401 C 1 HETATM 5 C C3 GOL . . . C 3 10.412 2.806 21.179 1 88.62 ? C3 GOL 401 C 1 HETATM 6 O O3 GOL . . . C 3 9.488 3.819 20.787 1 76.84 ? O3 GOL 401 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #