data_6NVU
#
_model_server_result.job_id            hK4sPtCczNOt-3KJC3MQbQ 
_model_server_result.datetime_utc      '2024-11-05 16:28:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nvu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":310}' 
#
_entry.id    6NVU 
#
_exptl.entry_id    6NVU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              199.161 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R,3Z,5R)-3-(2-HYDROXYETHYLIDENE)-7-OXO-4-OXA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NVU 
_cell.length_a            98.64 
_cell.length_b            98.64 
_cell.length_c            100.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NVU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 K N N 
? 8 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 46 A SER 70 1_555 F C7 TEM . A TEM 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
metalc ? metalc1 A OG SER 46 A SER 70 1_555 J NA NA . A NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? 
metalc ? metalc2 A OG SER 110 A SER 130 1_555 J NA NA . A NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc3 F O8 TEM . A TEM 305 1_555 J NA NA . A NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? 
metalc ? metalc4 I O1 L4A . A L4A 308 1_555 J NA NA . A NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
#
_chem_comp.formula           'C8 H9 N O5' 
_chem_comp.formula_weight    199.161 
_chem_comp.id                J01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R,3Z,5R)-3-(2-HYDROXYETHYLIDENE)-7-OXO-4-OXA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CLAVULANIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C5 J01 doub 179 n n 
C5 C4 J01 sing 180 n n 
C5 N1 J01 sing 181 n n 
C4 C3 J01 sing 182 n n 
C4 H4C1 J01 sing 183 n n 
C4 H4C2 J01 sing 184 n n 
C3 N1 J01 sing 185 n n 
C3 O1 J01 sing 186 n n 
C3 H3 J01 sing 187 n n 
N1 C2 J01 sing 188 n n 
O1 C1 J01 sing 189 n n 
C1 C2 J01 sing 190 n n 
C1 C6 J01 doub 191 z n 
C2 C8 J01 sing 192 n n 
C2 H2 J01 sing 193 n n 
C8 O5 J01 doub 194 n n 
C8 O4 J01 sing 195 n n 
O4 H4 J01 sing 196 n n 
C6 C7 J01 sing 197 n n 
C6 H6 J01 sing 198 n n 
C7 O3 J01 sing 199 n n 
C7 H7C1 J01 sing 200 n n 
C7 H7C2 J01 sing 201 n n 
O3 HA J01 sing 202 n n 
#
_atom_sites.entry_id                     6NVU 
_atom_sites.fract_transf_matrix[1][1]    0.010138 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010138 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00996 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 301 1 SO4 SO4 . 
C 3 ACT A 1 302 1 ACT ACT . 
D 3 ACT A 1 303 2 ACT ACT . 
E 3 ACT A 1 304 3 ACT ACT . 
F 4 TEM A 1 305 1 TEM TEM . 
G 5 CL A 1 306 1 CL CL . 
H 5 CL A 1 307 2 CL CL . 
I 6 L4A A 1 308 1 L4A HCA . 
J 7 NA A 1 309 1 NA NA . 
K 8 J01 A 1 310 1 J01 CLA . 
L 8 J01 A 1 311 2 J01 CLA . 
M 9 HOH A 1 401 92 HOH HOH . 
M 9 HOH A 2 402 110 HOH HOH . 
M 9 HOH A 3 403 58 HOH HOH . 
M 9 HOH A 4 404 61 HOH HOH . 
M 9 HOH A 5 405 59 HOH HOH . 
M 9 HOH A 6 406 47 HOH HOH . 
M 9 HOH A 7 407 54 HOH HOH . 
M 9 HOH A 8 408 161 HOH HOH . 
M 9 HOH A 9 409 76 HOH HOH . 
M 9 HOH A 10 410 33 HOH HOH . 
M 9 HOH A 11 411 72 HOH HOH . 
M 9 HOH A 12 412 89 HOH HOH . 
M 9 HOH A 13 413 155 HOH HOH . 
M 9 HOH A 14 414 2 HOH HOH . 
M 9 HOH A 15 415 29 HOH HOH . 
M 9 HOH A 16 416 81 HOH HOH . 
M 9 HOH A 17 417 44 HOH HOH . 
M 9 HOH A 18 418 97 HOH HOH . 
M 9 HOH A 19 419 37 HOH HOH . 
M 9 HOH A 20 420 91 HOH HOH . 
M 9 HOH A 21 421 6 HOH HOH . 
M 9 HOH A 22 422 18 HOH HOH . 
M 9 HOH A 23 423 3 HOH HOH . 
M 9 HOH A 24 424 162 HOH HOH . 
M 9 HOH A 25 425 7 HOH HOH . 
M 9 HOH A 26 426 112 HOH HOH . 
M 9 HOH A 27 427 85 HOH HOH . 
M 9 HOH A 28 428 34 HOH HOH . 
M 9 HOH A 29 429 27 HOH HOH . 
M 9 HOH A 30 430 42 HOH HOH . 
M 9 HOH A 31 431 90 HOH HOH . 
M 9 HOH A 32 432 12 HOH HOH . 
M 9 HOH A 33 433 30 HOH HOH . 
M 9 HOH A 34 434 98 HOH HOH . 
M 9 HOH A 35 435 49 HOH HOH . 
M 9 HOH A 36 436 114 HOH HOH . 
M 9 HOH A 37 437 17 HOH HOH . 
M 9 HOH A 38 438 67 HOH HOH . 
M 9 HOH A 39 439 105 HOH HOH . 
M 9 HOH A 40 440 32 HOH HOH . 
M 9 HOH A 41 441 84 HOH HOH . 
M 9 HOH A 42 442 118 HOH HOH . 
M 9 HOH A 43 443 159 HOH HOH . 
M 9 HOH A 44 444 134 HOH HOH . 
M 9 HOH A 45 445 5 HOH HOH . 
M 9 HOH A 46 446 55 HOH HOH . 
M 9 HOH A 47 447 106 HOH HOH . 
M 9 HOH A 48 448 115 HOH HOH . 
M 9 HOH A 49 449 63 HOH HOH . 
M 9 HOH A 50 450 35 HOH HOH . 
M 9 HOH A 51 451 113 HOH HOH . 
M 9 HOH A 52 452 128 HOH HOH . 
M 9 HOH A 53 453 139 HOH HOH . 
M 9 HOH A 54 454 41 HOH HOH . 
M 9 HOH A 55 455 22 HOH HOH . 
M 9 HOH A 56 456 11 HOH HOH . 
M 9 HOH A 57 457 140 HOH HOH . 
M 9 HOH A 58 458 65 HOH HOH . 
M 9 HOH A 59 459 31 HOH HOH . 
M 9 HOH A 60 460 14 HOH HOH . 
M 9 HOH A 61 461 70 HOH HOH . 
M 9 HOH A 62 462 51 HOH HOH . 
M 9 HOH A 63 463 8 HOH HOH . 
M 9 HOH A 64 464 28 HOH HOH . 
M 9 HOH A 65 465 24 HOH HOH . 
M 9 HOH A 66 466 120 HOH HOH . 
M 9 HOH A 67 467 56 HOH HOH . 
M 9 HOH A 68 468 9 HOH HOH . 
M 9 HOH A 69 469 15 HOH HOH . 
M 9 HOH A 70 470 46 HOH HOH . 
M 9 HOH A 71 471 71 HOH HOH . 
M 9 HOH A 72 472 20 HOH HOH . 
M 9 HOH A 73 473 100 HOH HOH . 
M 9 HOH A 74 474 38 HOH HOH . 
M 9 HOH A 75 475 62 HOH HOH . 
M 9 HOH A 76 476 104 HOH HOH . 
M 9 HOH A 77 477 36 HOH HOH . 
M 9 HOH A 78 478 53 HOH HOH . 
M 9 HOH A 79 479 83 HOH HOH . 
M 9 HOH A 80 480 79 HOH HOH . 
M 9 HOH A 81 481 10 HOH HOH . 
M 9 HOH A 82 482 43 HOH HOH . 
M 9 HOH A 83 483 108 HOH HOH . 
M 9 HOH A 84 484 130 HOH HOH . 
M 9 HOH A 85 485 40 HOH HOH . 
M 9 HOH A 86 486 123 HOH HOH . 
M 9 HOH A 87 487 99 HOH HOH . 
M 9 HOH A 88 488 132 HOH HOH . 
M 9 HOH A 89 489 109 HOH HOH . 
M 9 HOH A 90 490 1 HOH HOH . 
M 9 HOH A 91 491 16 HOH HOH . 
M 9 HOH A 92 492 13 HOH HOH . 
M 9 HOH A 93 493 116 HOH HOH . 
M 9 HOH A 94 494 57 HOH HOH . 
M 9 HOH A 95 495 143 HOH HOH . 
M 9 HOH A 96 496 107 HOH HOH . 
M 9 HOH A 97 497 4 HOH HOH . 
M 9 HOH A 98 498 138 HOH HOH . 
M 9 HOH A 99 499 21 HOH HOH . 
M 9 HOH A 100 500 52 HOH HOH . 
M 9 HOH A 101 501 124 HOH HOH . 
M 9 HOH A 102 502 73 HOH HOH . 
M 9 HOH A 103 503 151 HOH HOH . 
M 9 HOH A 104 504 77 HOH HOH . 
M 9 HOH A 105 505 75 HOH HOH . 
M 9 HOH A 106 506 154 HOH HOH . 
M 9 HOH A 107 507 68 HOH HOH . 
M 9 HOH A 108 508 148 HOH HOH . 
M 9 HOH A 109 509 122 HOH HOH . 
M 9 HOH A 110 510 87 HOH HOH . 
M 9 HOH A 111 511 131 HOH HOH . 
M 9 HOH A 112 512 125 HOH HOH . 
M 9 HOH A 113 513 156 HOH HOH . 
M 9 HOH A 114 514 64 HOH HOH . 
M 9 HOH A 115 515 93 HOH HOH . 
M 9 HOH A 116 516 69 HOH HOH . 
M 9 HOH A 117 517 78 HOH HOH . 
M 9 HOH A 118 518 74 HOH HOH . 
M 9 HOH A 119 519 137 HOH HOH . 
M 9 HOH A 120 520 39 HOH HOH . 
M 9 HOH A 121 521 88 HOH HOH . 
M 9 HOH A 122 522 145 HOH HOH . 
M 9 HOH A 123 523 153 HOH HOH . 
M 9 HOH A 124 524 26 HOH HOH . 
M 9 HOH A 125 525 119 HOH HOH . 
M 9 HOH A 126 526 48 HOH HOH . 
M 9 HOH A 127 527 146 HOH HOH . 
M 9 HOH A 128 528 19 HOH HOH . 
M 9 HOH A 129 529 160 HOH HOH . 
M 9 HOH A 130 530 45 HOH HOH . 
M 9 HOH A 131 531 102 HOH HOH . 
M 9 HOH A 132 532 66 HOH HOH . 
M 9 HOH A 133 533 152 HOH HOH . 
M 9 HOH A 134 534 157 HOH HOH . 
M 9 HOH A 135 535 111 HOH HOH . 
M 9 HOH A 136 536 117 HOH HOH . 
M 9 HOH A 137 537 60 HOH HOH . 
M 9 HOH A 138 538 103 HOH HOH . 
M 9 HOH A 139 539 144 HOH HOH . 
M 9 HOH A 140 540 86 HOH HOH . 
M 9 HOH A 141 541 101 HOH HOH . 
M 9 HOH A 142 542 23 HOH HOH . 
M 9 HOH A 143 543 96 HOH HOH . 
M 9 HOH A 144 544 94 HOH HOH . 
M 9 HOH A 145 545 95 HOH HOH . 
M 9 HOH A 146 546 147 HOH HOH . 
M 9 HOH A 147 547 80 HOH HOH . 
M 9 HOH A 148 548 133 HOH HOH . 
M 9 HOH A 149 549 136 HOH HOH . 
M 9 HOH A 150 550 158 HOH HOH . 
M 9 HOH A 151 551 121 HOH HOH . 
M 9 HOH A 152 552 127 HOH HOH . 
M 9 HOH A 153 553 150 HOH HOH . 
M 9 HOH A 154 554 50 HOH HOH . 
M 9 HOH A 155 555 149 HOH HOH . 
M 9 HOH A 156 556 135 HOH HOH . 
M 9 HOH A 157 557 142 HOH HOH . 
M 9 HOH A 158 558 25 HOH HOH . 
M 9 HOH A 159 559 82 HOH HOH . 
M 9 HOH A 160 560 126 HOH HOH . 
M 9 HOH A 161 561 141 HOH HOH . 
M 9 HOH A 162 562 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 J01 . . . K 8 20.99 0.852 15.099 1 52.41 ? O2 J01 310 A 1 
HETATM 2 C C5 J01 . . . K 8 19.841 0.624 14.837 1 47.49 ? C5 J01 310 A 1 
HETATM 3 C C4 J01 . . . K 8 18.527 0.527 15.596 1 41.2 ? C4 J01 310 A 1 
HETATM 4 C C3 J01 . . . K 8 17.891 0.272 14.204 1 45.99 ? C3 J01 310 A 1 
HETATM 5 N N1 J01 . . . K 8 19.232 0.344 13.616 1 46.78 ? N1 J01 310 A 1 
HETATM 6 O O1 J01 . . . K 8 17.14 1.391 13.697 1 46.98 ? O1 J01 310 A 1 
HETATM 7 C C1 J01 . . . K 8 17.827 1.937 12.659 1 41.36 ? C1 J01 310 A 1 
HETATM 8 C C2 J01 . . . K 8 19.169 1.256 12.484 1 42.91 ? C2 J01 310 A 1 
HETATM 9 C C8 J01 . . . K 8 19.199 0.485 11.179 1 55.46 ? C8 J01 310 A 1 
HETATM 10 O O5 J01 . . . K 8 19.398 1.073 10.142 1 55.76 -1 O5 J01 310 A 1 
HETATM 11 O O4 J01 . . . K 8 19.027 -0.707 11.226 1 55.35 ? O4 J01 310 A 1 
HETATM 12 C C6 J01 . . . K 8 17.255 2.963 11.886 1 40.24 ? C6 J01 310 A 1 
HETATM 13 C C7 J01 . . . K 8 15.892 3.508 12.22 1 35.82 ? C7 J01 310 A 1 
HETATM 14 O O3 J01 . . . K 8 14.917 2.975 11.352 1 40.59 ? O3 J01 310 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#