data_6NVW # _model_server_result.job_id 8wQ7p1rOCrApyC6njhaA1g _model_server_result.datetime_utc '2025-07-31 03:03:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6NVW # _exptl.entry_id 6NVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.67 _cell.angle_gamma 90 _cell.entry_id 6NVW _cell.length_a 58.238 _cell.length_b 77.961 _cell.length_c 84.086 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 153 A GLU 154 1_555 C CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 B OD1 ASN 73 B ASN 73 1_555 C CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 B O THR 75 B THR 75 1_555 C CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 B OD1 ASP 76 B ASP 76 1_555 C CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc5 B OE1 GLU 256 B GLU 256 1_555 C CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.091 ? metalc ? metalc6 B OE2 GLU 256 B GLU 256 1_555 C CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc7 B OD1 ASP 336 B ASP 336 1_555 D CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc8 B OD1 ASN 338 B ASN 338 1_555 D CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc9 B OD1 ASP 340 B ASP 340 1_555 D CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc10 B O TYR 342 B TYR 342 1_555 D CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc11 B OD1 ASP 344 B ASP 344 1_555 D CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc12 C CA CA . B CA 601 1_555 F O HOH . B HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc13 D CA CA . B CA 602 1_555 F O HOH . B HOH 755 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6NVW _atom_sites.fract_transf_matrix[1][1] 0.017171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003545 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA B 1 601 1 CA CA . D 3 CA B 1 602 2 CA CA . E 4 HOH A 1 301 234 HOH HOH . E 4 HOH A 2 302 176 HOH HOH . E 4 HOH A 3 303 161 HOH HOH . E 4 HOH A 4 304 147 HOH HOH . E 4 HOH A 5 305 140 HOH HOH . E 4 HOH A 6 306 115 HOH HOH . E 4 HOH A 7 307 118 HOH HOH . E 4 HOH A 8 308 184 HOH HOH . E 4 HOH A 9 309 215 HOH HOH . E 4 HOH A 10 310 36 HOH HOH . E 4 HOH A 11 311 226 HOH HOH . E 4 HOH A 12 312 222 HOH HOH . E 4 HOH A 13 313 159 HOH HOH . E 4 HOH A 14 314 210 HOH HOH . E 4 HOH A 15 315 81 HOH HOH . E 4 HOH A 16 316 100 HOH HOH . E 4 HOH A 17 317 158 HOH HOH . E 4 HOH A 18 318 223 HOH HOH . E 4 HOH A 19 319 53 HOH HOH . E 4 HOH A 20 320 117 HOH HOH . E 4 HOH A 21 321 32 HOH HOH . E 4 HOH A 22 322 74 HOH HOH . E 4 HOH A 23 323 57 HOH HOH . E 4 HOH A 24 324 148 HOH HOH . E 4 HOH A 25 325 232 HOH HOH . E 4 HOH A 26 326 95 HOH HOH . E 4 HOH A 27 327 173 HOH HOH . E 4 HOH A 28 328 3 HOH HOH . E 4 HOH A 29 329 143 HOH HOH . E 4 HOH A 30 330 17 HOH HOH . E 4 HOH A 31 331 19 HOH HOH . E 4 HOH A 32 332 185 HOH HOH . E 4 HOH A 33 333 90 HOH HOH . E 4 HOH A 34 334 116 HOH HOH . E 4 HOH A 35 335 5 HOH HOH . E 4 HOH A 36 336 47 HOH HOH . E 4 HOH A 37 337 225 HOH HOH . E 4 HOH A 38 338 66 HOH HOH . E 4 HOH A 39 339 4 HOH HOH . E 4 HOH A 40 340 42 HOH HOH . E 4 HOH A 41 341 15 HOH HOH . E 4 HOH A 42 342 26 HOH HOH . E 4 HOH A 43 343 49 HOH HOH . E 4 HOH A 44 344 76 HOH HOH . E 4 HOH A 45 345 151 HOH HOH . E 4 HOH A 46 346 213 HOH HOH . E 4 HOH A 47 347 35 HOH HOH . E 4 HOH A 48 348 16 HOH HOH . E 4 HOH A 49 349 146 HOH HOH . E 4 HOH A 50 350 98 HOH HOH . E 4 HOH A 51 351 149 HOH HOH . E 4 HOH A 52 352 51 HOH HOH . E 4 HOH A 53 353 162 HOH HOH . E 4 HOH A 54 354 58 HOH HOH . E 4 HOH A 55 355 14 HOH HOH . E 4 HOH A 56 356 129 HOH HOH . E 4 HOH A 57 357 150 HOH HOH . E 4 HOH A 58 358 233 HOH HOH . E 4 HOH A 59 359 216 HOH HOH . E 4 HOH A 60 360 39 HOH HOH . E 4 HOH A 61 361 217 HOH HOH . E 4 HOH A 62 362 139 HOH HOH . E 4 HOH A 63 363 30 HOH HOH . E 4 HOH A 64 364 160 HOH HOH . E 4 HOH A 65 365 211 HOH HOH . E 4 HOH A 66 366 127 HOH HOH . E 4 HOH A 67 367 212 HOH HOH . F 4 HOH B 1 701 145 HOH HOH . F 4 HOH B 2 702 70 HOH HOH . F 4 HOH B 3 703 251 HOH HOH . F 4 HOH B 4 704 214 HOH HOH . F 4 HOH B 5 705 111 HOH HOH . F 4 HOH B 6 706 109 HOH HOH . F 4 HOH B 7 707 245 HOH HOH . F 4 HOH B 8 708 119 HOH HOH . F 4 HOH B 9 709 168 HOH HOH . F 4 HOH B 10 710 256 HOH HOH . F 4 HOH B 11 711 78 HOH HOH . F 4 HOH B 12 712 87 HOH HOH . F 4 HOH B 13 713 104 HOH HOH . F 4 HOH B 14 714 138 HOH HOH . F 4 HOH B 15 715 235 HOH HOH . F 4 HOH B 16 716 22 HOH HOH . F 4 HOH B 17 717 254 HOH HOH . F 4 HOH B 18 718 242 HOH HOH . F 4 HOH B 19 719 54 HOH HOH . F 4 HOH B 20 720 165 HOH HOH . F 4 HOH B 21 721 108 HOH HOH . F 4 HOH B 22 722 73 HOH HOH . F 4 HOH B 23 723 72 HOH HOH . F 4 HOH B 24 724 142 HOH HOH . F 4 HOH B 25 725 13 HOH HOH . F 4 HOH B 26 726 224 HOH HOH . F 4 HOH B 27 727 209 HOH HOH . F 4 HOH B 28 728 208 HOH HOH . F 4 HOH B 29 729 48 HOH HOH . F 4 HOH B 30 730 238 HOH HOH . F 4 HOH B 31 731 60 HOH HOH . F 4 HOH B 32 732 59 HOH HOH . F 4 HOH B 33 733 152 HOH HOH . F 4 HOH B 34 734 27 HOH HOH . F 4 HOH B 35 735 34 HOH HOH . F 4 HOH B 36 736 202 HOH HOH . F 4 HOH B 37 737 183 HOH HOH . F 4 HOH B 38 738 247 HOH HOH . F 4 HOH B 39 739 45 HOH HOH . F 4 HOH B 40 740 141 HOH HOH . F 4 HOH B 41 741 206 HOH HOH . F 4 HOH B 42 742 204 HOH HOH . F 4 HOH B 43 743 43 HOH HOH . F 4 HOH B 44 744 97 HOH HOH . F 4 HOH B 45 745 228 HOH HOH . F 4 HOH B 46 746 7 HOH HOH . F 4 HOH B 47 747 67 HOH HOH . F 4 HOH B 48 748 157 HOH HOH . F 4 HOH B 49 749 83 HOH HOH . F 4 HOH B 50 750 96 HOH HOH . F 4 HOH B 51 751 187 HOH HOH . F 4 HOH B 52 752 79 HOH HOH . F 4 HOH B 53 753 132 HOH HOH . F 4 HOH B 54 754 105 HOH HOH . F 4 HOH B 55 755 194 HOH HOH . F 4 HOH B 56 756 6 HOH HOH . F 4 HOH B 57 757 155 HOH HOH . F 4 HOH B 58 758 38 HOH HOH . F 4 HOH B 59 759 2 HOH HOH . F 4 HOH B 60 760 86 HOH HOH . F 4 HOH B 61 761 136 HOH HOH . F 4 HOH B 62 762 135 HOH HOH . F 4 HOH B 63 763 21 HOH HOH . F 4 HOH B 64 764 24 HOH HOH . F 4 HOH B 65 765 207 HOH HOH . F 4 HOH B 66 766 41 HOH HOH . F 4 HOH B 67 767 227 HOH HOH . F 4 HOH B 68 768 156 HOH HOH . F 4 HOH B 69 769 237 HOH HOH . F 4 HOH B 70 770 126 HOH HOH . F 4 HOH B 71 771 172 HOH HOH . F 4 HOH B 72 772 103 HOH HOH . F 4 HOH B 73 773 20 HOH HOH . F 4 HOH B 74 774 199 HOH HOH . F 4 HOH B 75 775 253 HOH HOH . F 4 HOH B 76 776 182 HOH HOH . F 4 HOH B 77 777 101 HOH HOH . F 4 HOH B 78 778 25 HOH HOH . F 4 HOH B 79 779 219 HOH HOH . F 4 HOH B 80 780 231 HOH HOH . F 4 HOH B 81 781 23 HOH HOH . F 4 HOH B 82 782 107 HOH HOH . F 4 HOH B 83 783 40 HOH HOH . F 4 HOH B 84 784 33 HOH HOH . F 4 HOH B 85 785 92 HOH HOH . F 4 HOH B 86 786 61 HOH HOH . F 4 HOH B 87 787 203 HOH HOH . F 4 HOH B 88 788 189 HOH HOH . F 4 HOH B 89 789 112 HOH HOH . F 4 HOH B 90 790 178 HOH HOH . F 4 HOH B 91 791 175 HOH HOH . F 4 HOH B 92 792 167 HOH HOH . F 4 HOH B 93 793 236 HOH HOH . F 4 HOH B 94 794 12 HOH HOH . F 4 HOH B 95 795 114 HOH HOH . F 4 HOH B 96 796 63 HOH HOH . F 4 HOH B 97 797 64 HOH HOH . F 4 HOH B 98 798 1 HOH HOH . F 4 HOH B 99 799 65 HOH HOH . F 4 HOH B 100 800 69 HOH HOH . F 4 HOH B 101 801 122 HOH HOH . F 4 HOH B 102 802 94 HOH HOH . F 4 HOH B 103 803 9 HOH HOH . F 4 HOH B 104 804 71 HOH HOH . F 4 HOH B 105 805 89 HOH HOH . F 4 HOH B 106 806 93 HOH HOH . F 4 HOH B 107 807 75 HOH HOH . F 4 HOH B 108 808 31 HOH HOH . F 4 HOH B 109 809 80 HOH HOH . F 4 HOH B 110 810 91 HOH HOH . F 4 HOH B 111 811 84 HOH HOH . F 4 HOH B 112 812 18 HOH HOH . F 4 HOH B 113 813 121 HOH HOH . F 4 HOH B 114 814 8 HOH HOH . F 4 HOH B 115 815 82 HOH HOH . F 4 HOH B 116 816 252 HOH HOH . F 4 HOH B 117 817 85 HOH HOH . F 4 HOH B 118 818 44 HOH HOH . F 4 HOH B 119 819 243 HOH HOH . F 4 HOH B 120 820 46 HOH HOH . F 4 HOH B 121 821 133 HOH HOH . F 4 HOH B 122 822 190 HOH HOH . F 4 HOH B 123 823 77 HOH HOH . F 4 HOH B 124 824 106 HOH HOH . F 4 HOH B 125 825 68 HOH HOH . F 4 HOH B 126 826 130 HOH HOH . F 4 HOH B 127 827 134 HOH HOH . F 4 HOH B 128 828 144 HOH HOH . F 4 HOH B 129 829 166 HOH HOH . F 4 HOH B 130 830 28 HOH HOH . F 4 HOH B 131 831 180 HOH HOH . F 4 HOH B 132 832 191 HOH HOH . F 4 HOH B 133 833 120 HOH HOH . F 4 HOH B 134 834 164 HOH HOH . F 4 HOH B 135 835 11 HOH HOH . F 4 HOH B 136 836 218 HOH HOH . F 4 HOH B 137 837 250 HOH HOH . F 4 HOH B 138 838 248 HOH HOH . F 4 HOH B 139 839 169 HOH HOH . F 4 HOH B 140 840 125 HOH HOH . F 4 HOH B 141 841 29 HOH HOH . F 4 HOH B 142 842 220 HOH HOH . F 4 HOH B 143 843 55 HOH HOH . F 4 HOH B 144 844 124 HOH HOH . F 4 HOH B 145 845 110 HOH HOH . F 4 HOH B 146 846 10 HOH HOH . F 4 HOH B 147 847 221 HOH HOH . F 4 HOH B 148 848 188 HOH HOH . F 4 HOH B 149 849 50 HOH HOH . F 4 HOH B 150 850 179 HOH HOH . F 4 HOH B 151 851 196 HOH HOH . F 4 HOH B 152 852 200 HOH HOH . F 4 HOH B 153 853 171 HOH HOH . F 4 HOH B 154 854 246 HOH HOH . F 4 HOH B 155 855 241 HOH HOH . F 4 HOH B 156 856 113 HOH HOH . F 4 HOH B 157 857 88 HOH HOH . F 4 HOH B 158 858 174 HOH HOH . F 4 HOH B 159 859 123 HOH HOH . F 4 HOH B 160 860 37 HOH HOH . F 4 HOH B 161 861 201 HOH HOH . F 4 HOH B 162 862 197 HOH HOH . F 4 HOH B 163 863 52 HOH HOH . F 4 HOH B 164 864 62 HOH HOH . F 4 HOH B 165 865 102 HOH HOH . F 4 HOH B 166 866 192 HOH HOH . F 4 HOH B 167 867 193 HOH HOH . F 4 HOH B 168 868 186 HOH HOH . F 4 HOH B 169 869 137 HOH HOH . F 4 HOH B 170 870 170 HOH HOH . F 4 HOH B 171 871 240 HOH HOH . F 4 HOH B 172 872 154 HOH HOH . F 4 HOH B 173 873 195 HOH HOH . F 4 HOH B 174 874 244 HOH HOH . F 4 HOH B 175 875 128 HOH HOH . F 4 HOH B 176 876 198 HOH HOH . F 4 HOH B 177 877 131 HOH HOH . F 4 HOH B 178 878 230 HOH HOH . F 4 HOH B 179 879 56 HOH HOH . F 4 HOH B 180 880 229 HOH HOH . F 4 HOH B 181 881 205 HOH HOH . F 4 HOH B 182 882 153 HOH HOH . F 4 HOH B 183 883 99 HOH HOH . F 4 HOH B 184 884 239 HOH HOH . F 4 HOH B 185 885 177 HOH HOH . F 4 HOH B 186 886 255 HOH HOH . F 4 HOH B 187 887 249 HOH HOH . F 4 HOH B 188 888 181 HOH HOH . F 4 HOH B 189 889 163 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -8.017 _atom_site.Cartn_y 4.09 _atom_site.Cartn_z -1.399 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.05 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 601 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #