data_6NWD # _model_server_result.job_id nmfZ25bQUZFCsyjJwcAUaw _model_server_result.datetime_utc '2025-02-18 04:01:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nwd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1306}' # _entry.id 6NWD # _exptl.entry_id 6NWD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NWD _cell.length_a 54.25 _cell.length_b 129.25 _cell.length_c 82.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NWD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 41.325 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 257 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 257 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 1301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.43 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 101 n n C1 H11 D12 sing 102 n n C1 H12 D12 sing 103 n n C1 H13 D12 sing 104 n n C2 C3 D12 sing 105 n n C2 H21 D12 sing 106 n n C2 H22 D12 sing 107 n n C3 C4 D12 sing 108 n n C3 H31 D12 sing 109 n n C3 H32 D12 sing 110 n n C4 C5 D12 sing 111 n n C4 H41 D12 sing 112 n n C4 H42 D12 sing 113 n n C5 C6 D12 sing 114 n n C5 H51 D12 sing 115 n n C5 H52 D12 sing 116 n n C6 C7 D12 sing 117 n n C6 H61 D12 sing 118 n n C6 H62 D12 sing 119 n n C7 C8 D12 sing 120 n n C7 H71 D12 sing 121 n n C7 H72 D12 sing 122 n n C8 C9 D12 sing 123 n n C8 H81 D12 sing 124 n n C8 H82 D12 sing 125 n n C9 C10 D12 sing 126 n n C9 H91 D12 sing 127 n n C9 H92 D12 sing 128 n n C10 C11 D12 sing 129 n n C10 H101 D12 sing 130 n n C10 H102 D12 sing 131 n n C11 C12 D12 sing 132 n n C11 H111 D12 sing 133 n n C11 H112 D12 sing 134 n n C12 H121 D12 sing 135 n n C12 H122 D12 sing 136 n n C12 H123 D12 sing 137 n n # _atom_sites.entry_id 6NWD _atom_sites.fract_transf_matrix[1][1] 0.018433 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 1301 1301 RET RET . C 3 PX4 A 1 1302 1401 PX4 PX4 . D 3 PX4 A 1 1303 1402 PX4 PX4 . E 3 PX4 A 1 1304 1403 PX4 PX4 . F 4 D10 A 1 1305 1404 D10 D10 . G 5 D12 A 1 1306 1405 D12 D12 . H 6 HOH A 1 1401 402 HOH HOH . H 6 HOH A 2 1402 411 HOH HOH . H 6 HOH A 3 1403 502 HOH HOH . H 6 HOH A 4 1404 501 HOH HOH . H 6 HOH A 5 1405 414 HOH HOH . H 6 HOH A 6 1406 420 HOH HOH . H 6 HOH A 7 1407 413 HOH HOH . H 6 HOH A 8 1408 412 HOH HOH . H 6 HOH A 9 1409 417 HOH HOH . H 6 HOH A 10 1410 418 HOH HOH . H 6 HOH A 11 1411 419 HOH HOH . H 6 HOH A 12 1412 410 HOH HOH . H 6 HOH A 13 1413 416 HOH HOH . H 6 HOH A 14 1414 415 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . G 5 14.361 36 15.279 1 48 ? C1 D12 1306 A 1 HETATM 2 C C2 D12 . . . G 5 15.656 35.25 15.053 1 52.24 ? C2 D12 1306 A 1 HETATM 3 C C3 D12 . . . G 5 15.592 33.896 15.724 1 45.02 ? C3 D12 1306 A 1 HETATM 4 C C4 D12 . . . G 5 16.224 32.856 14.827 1 47.62 ? C4 D12 1306 A 1 HETATM 5 C C5 D12 . . . G 5 16.168 31.505 15.506 1 38.48 ? C5 D12 1306 A 1 HETATM 6 C C6 D12 . . . G 5 17.047 30.537 14.749 1 46.94 ? C6 D12 1306 A 1 HETATM 7 C C7 D12 . . . G 5 17.165 29.225 15.493 1 48.3 ? C7 D12 1306 A 1 HETATM 8 C C8 D12 . . . G 5 18.16 28.345 14.767 1 42.81 ? C8 D12 1306 A 1 HETATM 9 C C9 D12 . . . G 5 18.361 27.058 15.537 1 47.11 ? C9 D12 1306 A 1 HETATM 10 C C10 D12 . . . G 5 19.442 26.233 14.872 1 51.43 ? C10 D12 1306 A 1 HETATM 11 C C11 D12 . . . G 5 19.721 24.988 15.687 1 56.25 ? C11 D12 1306 A 1 HETATM 12 C C12 D12 . . . G 5 20.743 24.149 14.952 1 58.2 ? C12 D12 1306 A 1 # _model_server_stats.io_time_ms 93 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 12 #