data_6NWE # _model_server_result.job_id QIs4WJGNDhdnTtEvtqooVQ _model_server_result.datetime_utc '2024-11-21 14:36:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nwe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":409}' # _entry.id 6NWE # _exptl.entry_id 6NWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6NWE _cell.length_a 242.169 _cell.length_b 242.169 _cell.length_c 110.716 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG D 1 NAG 3 n C NAG 2 C 2 NAG D 2 NAG 3 n C BMA 3 C 3 BMA D 3 BMA 3 n C BMA 4 C 4 BMA D 4 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? covale ? covale1 A ND2 ASN 15 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A SG CYS 323 A CYS 323 1_555 H C1 PLM . A PLM 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale5 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 362 n n C1 O2 PLM doub 363 n n C1 C2 PLM sing 364 n n O1 H PLM sing 365 n n C2 C3 PLM sing 366 n n C2 H21 PLM sing 367 n n C2 H22 PLM sing 368 n n C3 C4 PLM sing 369 n n C3 H31 PLM sing 370 n n C3 H32 PLM sing 371 n n C4 C5 PLM sing 372 n n C4 H41 PLM sing 373 n n C4 H42 PLM sing 374 n n C5 C6 PLM sing 375 n n C5 H51 PLM sing 376 n n C5 H52 PLM sing 377 n n C6 C7 PLM sing 378 n n C6 H61 PLM sing 379 n n C6 H62 PLM sing 380 n n C7 C8 PLM sing 381 n n C7 H71 PLM sing 382 n n C7 H72 PLM sing 383 n n C8 C9 PLM sing 384 n n C8 H81 PLM sing 385 n n C8 H82 PLM sing 386 n n C9 CA PLM sing 387 n n C9 H91 PLM sing 388 n n C9 H92 PLM sing 389 n n CA CB PLM sing 390 n n CA HA1 PLM sing 391 n n CA HA2 PLM sing 392 n n CB CC PLM sing 393 n n CB HB1 PLM sing 394 n n CB HB2 PLM sing 395 n n CC CD PLM sing 396 n n CC HC1 PLM sing 397 n n CC HC2 PLM sing 398 n n CD CE PLM sing 399 n n CD HD1 PLM sing 400 n n CD HD2 PLM sing 401 n n CE CF PLM sing 402 n n CE HE1 PLM sing 403 n n CE HE2 PLM sing 404 n n CF CG PLM sing 405 n n CF HF1 PLM sing 406 n n CF HF2 PLM sing 407 n n CG HG1 PLM sing 408 n n CG HG2 PLM sing 409 n n CG HG3 PLM sing 410 n n # _atom_sites.entry_id 6NWE _atom_sites.fract_transf_matrix[1][1] 0.004129 _atom_sites.fract_transf_matrix[1][2] 0.002384 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BOG A 1 405 1 BOG BOG . E 4 BOG A 1 406 2 BOG BOG . F 4 BOG A 1 407 3 BOG BOG . G 4 BOG A 1 408 4 BOG BOG . H 5 PLM A 1 409 1 PLM PLM . I 6 SO4 A 1 410 1 SO4 SO4 . J 6 SO4 A 1 411 3 SO4 SO4 . K 4 BOG A 1 412 5 BOG BOG . L 6 SO4 B 1 401 2 SO4 SO4 . M 7 HOH A 1 501 5 HOH HOH . M 7 HOH A 2 502 7 HOH HOH . M 7 HOH A 3 503 2 HOH HOH . M 7 HOH A 4 504 8 HOH HOH . M 7 HOH A 5 505 4 HOH HOH . M 7 HOH A 6 506 3 HOH HOH . M 7 HOH A 7 507 1 HOH HOH . M 7 HOH A 8 508 9 HOH HOH . M 7 HOH A 9 509 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . H 5 25.38 14.625 56.463 1 80.14 1 C1 PLM 409 A 1 HETATM 2 O O2 PLM . . . H 5 24.771 14.189 57.385 1 93.34 ? O2 PLM 409 A 1 HETATM 3 C C2 PLM . . . H 5 25.456 16.146 56.423 1 73.25 ? C2 PLM 409 A 1 HETATM 4 C C3 PLM . . . H 5 24.622 16.719 57.572 1 71.03 ? C3 PLM 409 A 1 HETATM 5 C C4 PLM . . . H 5 24.661 18.243 57.639 1 64.97 ? C4 PLM 409 A 1 HETATM 6 C C5 PLM . . . H 5 24.018 18.791 58.91 1 59.65 ? C5 PLM 409 A 1 HETATM 7 C C6 PLM . . . H 5 24.556 20.19 59.205 1 71 ? C6 PLM 409 A 1 HETATM 8 C C7 PLM . . . H 5 23.594 21.067 60 1 68.76 ? C7 PLM 409 A 1 HETATM 9 C C8 PLM . . . H 5 24.108 22.5 60.07 1 72.62 ? C8 PLM 409 A 1 HETATM 10 C C9 PLM . . . H 5 23.136 23.506 59.459 1 79.65 ? C9 PLM 409 A 1 HETATM 11 C CA PLM . . . H 5 23.876 24.618 58.726 1 76.96 ? CA PLM 409 A 1 HETATM 12 C CB PLM . . . H 5 23.245 25.999 58.903 1 73.51 ? CB PLM 409 A 1 HETATM 13 C CC PLM . . . H 5 24.349 27.056 58.932 1 80.41 ? CC PLM 409 A 1 HETATM 14 C CD PLM . . . H 5 23.84 28.476 58.72 1 74.98 ? CD PLM 409 A 1 HETATM 15 C CE PLM . . . H 5 24.965 29.493 58.886 1 74.98 ? CE PLM 409 A 1 HETATM 16 C CF PLM . . . H 5 24.48 30.926 58.68 1 74.66 ? CF PLM 409 A 1 HETATM 17 C CG PLM . . . H 5 25.58 31.834 58.139 1 76.64 ? CG PLM 409 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #