data_6NXI # _model_server_result.job_id 0mt49CW75b0aIHnLG4um8g _model_server_result.datetime_utc '2024-11-10 01:24:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 6NXI # _exptl.entry_id 6NXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NXI _cell.length_a 39.121 _cell.length_b 70.957 _cell.length_c 106.813 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 155 A THR 171 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 A OG1 THR 155 A THR 171 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc3 A OE1 GLU 184 A GLU 200 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc4 A O ASP 269 A ASP 285 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 A OD1 ASP 269 A ASP 285 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc6 A OD1 ASP 269 A ASP 285 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc7 A OG1 THR 273 A THR 289 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc8 B O2A FAD . A FAD 500 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc9 B O2A FAD . A FAD 500 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc10 B O2P FAD . A FAD 500 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc11 D MG MG . A MG 502 1_555 F O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc12 D MG MG . A MG 502 1_555 F O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6NXI _atom_sites.fract_transf_matrix[1][1] 0.025562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 500 500 FAD FAD . C 3 MG A 1 501 501 MG MG . D 3 MG A 1 502 502 MG MG . E 4 EDO A 1 503 503 EDO EDO . F 5 HOH A 1 601 77 HOH HOH . F 5 HOH A 2 602 223 HOH HOH . F 5 HOH A 3 603 211 HOH HOH . F 5 HOH A 4 604 216 HOH HOH . F 5 HOH A 5 605 97 HOH HOH . F 5 HOH A 6 606 135 HOH HOH . F 5 HOH A 7 607 192 HOH HOH . F 5 HOH A 8 608 150 HOH HOH . F 5 HOH A 9 609 143 HOH HOH . F 5 HOH A 10 610 136 HOH HOH . F 5 HOH A 11 611 57 HOH HOH . F 5 HOH A 12 612 244 HOH HOH . F 5 HOH A 13 613 201 HOH HOH . F 5 HOH A 14 614 214 HOH HOH . F 5 HOH A 15 615 73 HOH HOH . F 5 HOH A 16 616 229 HOH HOH . F 5 HOH A 17 617 58 HOH HOH . F 5 HOH A 18 618 168 HOH HOH . F 5 HOH A 19 619 36 HOH HOH . F 5 HOH A 20 620 184 HOH HOH . F 5 HOH A 21 621 24 HOH HOH . F 5 HOH A 22 622 121 HOH HOH . F 5 HOH A 23 623 50 HOH HOH . F 5 HOH A 24 624 222 HOH HOH . F 5 HOH A 25 625 188 HOH HOH . F 5 HOH A 26 626 91 HOH HOH . F 5 HOH A 27 627 18 HOH HOH . F 5 HOH A 28 628 199 HOH HOH . F 5 HOH A 29 629 27 HOH HOH . F 5 HOH A 30 630 85 HOH HOH . F 5 HOH A 31 631 84 HOH HOH . F 5 HOH A 32 632 46 HOH HOH . F 5 HOH A 33 633 245 HOH HOH . F 5 HOH A 34 634 53 HOH HOH . F 5 HOH A 35 635 203 HOH HOH . F 5 HOH A 36 636 138 HOH HOH . F 5 HOH A 37 637 79 HOH HOH . F 5 HOH A 38 638 71 HOH HOH . F 5 HOH A 39 639 137 HOH HOH . F 5 HOH A 40 640 194 HOH HOH . F 5 HOH A 41 641 19 HOH HOH . F 5 HOH A 42 642 16 HOH HOH . F 5 HOH A 43 643 92 HOH HOH . F 5 HOH A 44 644 86 HOH HOH . F 5 HOH A 45 645 69 HOH HOH . F 5 HOH A 46 646 3 HOH HOH . F 5 HOH A 47 647 202 HOH HOH . F 5 HOH A 48 648 118 HOH HOH . F 5 HOH A 49 649 242 HOH HOH . F 5 HOH A 50 650 111 HOH HOH . F 5 HOH A 51 651 98 HOH HOH . F 5 HOH A 52 652 81 HOH HOH . F 5 HOH A 53 653 125 HOH HOH . F 5 HOH A 54 654 117 HOH HOH . F 5 HOH A 55 655 48 HOH HOH . F 5 HOH A 56 656 187 HOH HOH . F 5 HOH A 57 657 44 HOH HOH . F 5 HOH A 58 658 47 HOH HOH . F 5 HOH A 59 659 89 HOH HOH . F 5 HOH A 60 660 40 HOH HOH . F 5 HOH A 61 661 11 HOH HOH . F 5 HOH A 62 662 122 HOH HOH . F 5 HOH A 63 663 205 HOH HOH . F 5 HOH A 64 664 142 HOH HOH . F 5 HOH A 65 665 75 HOH HOH . F 5 HOH A 66 666 131 HOH HOH . F 5 HOH A 67 667 2 HOH HOH . F 5 HOH A 68 668 126 HOH HOH . F 5 HOH A 69 669 127 HOH HOH . F 5 HOH A 70 670 68 HOH HOH . F 5 HOH A 71 671 9 HOH HOH . F 5 HOH A 72 672 83 HOH HOH . F 5 HOH A 73 673 12 HOH HOH . F 5 HOH A 74 674 39 HOH HOH . F 5 HOH A 75 675 178 HOH HOH . F 5 HOH A 76 676 113 HOH HOH . F 5 HOH A 77 677 110 HOH HOH . F 5 HOH A 78 678 248 HOH HOH . F 5 HOH A 79 679 56 HOH HOH . F 5 HOH A 80 680 5 HOH HOH . F 5 HOH A 81 681 115 HOH HOH . F 5 HOH A 82 682 213 HOH HOH . F 5 HOH A 83 683 171 HOH HOH . F 5 HOH A 84 684 65 HOH HOH . F 5 HOH A 85 685 22 HOH HOH . F 5 HOH A 86 686 167 HOH HOH . F 5 HOH A 87 687 52 HOH HOH . F 5 HOH A 88 688 45 HOH HOH . F 5 HOH A 89 689 157 HOH HOH . F 5 HOH A 90 690 49 HOH HOH . F 5 HOH A 91 691 128 HOH HOH . F 5 HOH A 92 692 180 HOH HOH . F 5 HOH A 93 693 66 HOH HOH . F 5 HOH A 94 694 20 HOH HOH . F 5 HOH A 95 695 217 HOH HOH . F 5 HOH A 96 696 37 HOH HOH . F 5 HOH A 97 697 105 HOH HOH . F 5 HOH A 98 698 78 HOH HOH . F 5 HOH A 99 699 7 HOH HOH . F 5 HOH A 100 700 33 HOH HOH . F 5 HOH A 101 701 186 HOH HOH . F 5 HOH A 102 702 6 HOH HOH . F 5 HOH A 103 703 1 HOH HOH . F 5 HOH A 104 704 38 HOH HOH . F 5 HOH A 105 705 42 HOH HOH . F 5 HOH A 106 706 149 HOH HOH . F 5 HOH A 107 707 51 HOH HOH . F 5 HOH A 108 708 130 HOH HOH . F 5 HOH A 109 709 35 HOH HOH . F 5 HOH A 110 710 43 HOH HOH . F 5 HOH A 111 711 82 HOH HOH . F 5 HOH A 112 712 185 HOH HOH . F 5 HOH A 113 713 114 HOH HOH . F 5 HOH A 114 714 196 HOH HOH . F 5 HOH A 115 715 193 HOH HOH . F 5 HOH A 116 716 62 HOH HOH . F 5 HOH A 117 717 219 HOH HOH . F 5 HOH A 118 718 26 HOH HOH . F 5 HOH A 119 719 74 HOH HOH . F 5 HOH A 120 720 31 HOH HOH . F 5 HOH A 121 721 28 HOH HOH . F 5 HOH A 122 722 32 HOH HOH . F 5 HOH A 123 723 95 HOH HOH . F 5 HOH A 124 724 41 HOH HOH . F 5 HOH A 125 725 17 HOH HOH . F 5 HOH A 126 726 239 HOH HOH . F 5 HOH A 127 727 233 HOH HOH . F 5 HOH A 128 728 13 HOH HOH . F 5 HOH A 129 729 15 HOH HOH . F 5 HOH A 130 730 80 HOH HOH . F 5 HOH A 131 731 147 HOH HOH . F 5 HOH A 132 732 29 HOH HOH . F 5 HOH A 133 733 249 HOH HOH . F 5 HOH A 134 734 104 HOH HOH . F 5 HOH A 135 735 10 HOH HOH . F 5 HOH A 136 736 34 HOH HOH . F 5 HOH A 137 737 60 HOH HOH . F 5 HOH A 138 738 208 HOH HOH . F 5 HOH A 139 739 179 HOH HOH . F 5 HOH A 140 740 220 HOH HOH . F 5 HOH A 141 741 204 HOH HOH . F 5 HOH A 142 742 14 HOH HOH . F 5 HOH A 143 743 4 HOH HOH . F 5 HOH A 144 744 160 HOH HOH . F 5 HOH A 145 745 182 HOH HOH . F 5 HOH A 146 746 61 HOH HOH . F 5 HOH A 147 747 129 HOH HOH . F 5 HOH A 148 748 152 HOH HOH . F 5 HOH A 149 749 87 HOH HOH . F 5 HOH A 150 750 103 HOH HOH . F 5 HOH A 151 751 106 HOH HOH . F 5 HOH A 152 752 177 HOH HOH . F 5 HOH A 153 753 100 HOH HOH . F 5 HOH A 154 754 54 HOH HOH . F 5 HOH A 155 755 145 HOH HOH . F 5 HOH A 156 756 162 HOH HOH . F 5 HOH A 157 757 228 HOH HOH . F 5 HOH A 158 758 55 HOH HOH . F 5 HOH A 159 759 195 HOH HOH . F 5 HOH A 160 760 25 HOH HOH . F 5 HOH A 161 761 119 HOH HOH . F 5 HOH A 162 762 70 HOH HOH . F 5 HOH A 163 763 23 HOH HOH . F 5 HOH A 164 764 59 HOH HOH . F 5 HOH A 165 765 132 HOH HOH . F 5 HOH A 166 766 198 HOH HOH . F 5 HOH A 167 767 88 HOH HOH . F 5 HOH A 168 768 76 HOH HOH . F 5 HOH A 169 769 227 HOH HOH . F 5 HOH A 170 770 8 HOH HOH . F 5 HOH A 171 771 139 HOH HOH . F 5 HOH A 172 772 116 HOH HOH . F 5 HOH A 173 773 238 HOH HOH . F 5 HOH A 174 774 246 HOH HOH . F 5 HOH A 175 775 64 HOH HOH . F 5 HOH A 176 776 206 HOH HOH . F 5 HOH A 177 777 189 HOH HOH . F 5 HOH A 178 778 174 HOH HOH . F 5 HOH A 179 779 165 HOH HOH . F 5 HOH A 180 780 72 HOH HOH . F 5 HOH A 181 781 146 HOH HOH . F 5 HOH A 182 782 107 HOH HOH . F 5 HOH A 183 783 99 HOH HOH . F 5 HOH A 184 784 215 HOH HOH . F 5 HOH A 185 785 190 HOH HOH . F 5 HOH A 186 786 212 HOH HOH . F 5 HOH A 187 787 133 HOH HOH . F 5 HOH A 188 788 67 HOH HOH . F 5 HOH A 189 789 161 HOH HOH . F 5 HOH A 190 790 183 HOH HOH . F 5 HOH A 191 791 90 HOH HOH . F 5 HOH A 192 792 197 HOH HOH . F 5 HOH A 193 793 247 HOH HOH . F 5 HOH A 194 794 234 HOH HOH . F 5 HOH A 195 795 30 HOH HOH . F 5 HOH A 196 796 156 HOH HOH . F 5 HOH A 197 797 236 HOH HOH . F 5 HOH A 198 798 241 HOH HOH . F 5 HOH A 199 799 164 HOH HOH . F 5 HOH A 200 800 158 HOH HOH . F 5 HOH A 201 801 225 HOH HOH . F 5 HOH A 202 802 134 HOH HOH . F 5 HOH A 203 803 172 HOH HOH . F 5 HOH A 204 804 96 HOH HOH . F 5 HOH A 205 805 151 HOH HOH . F 5 HOH A 206 806 232 HOH HOH . F 5 HOH A 207 807 243 HOH HOH . F 5 HOH A 208 808 224 HOH HOH . F 5 HOH A 209 809 170 HOH HOH . F 5 HOH A 210 810 231 HOH HOH . F 5 HOH A 211 811 153 HOH HOH . F 5 HOH A 212 812 101 HOH HOH . F 5 HOH A 213 813 163 HOH HOH . F 5 HOH A 214 814 93 HOH HOH . F 5 HOH A 215 815 237 HOH HOH . F 5 HOH A 216 816 200 HOH HOH . F 5 HOH A 217 817 109 HOH HOH . F 5 HOH A 218 818 221 HOH HOH . F 5 HOH A 219 819 173 HOH HOH . F 5 HOH A 220 820 155 HOH HOH . F 5 HOH A 221 821 209 HOH HOH . F 5 HOH A 222 822 148 HOH HOH . F 5 HOH A 223 823 124 HOH HOH . F 5 HOH A 224 824 120 HOH HOH . F 5 HOH A 225 825 166 HOH HOH . F 5 HOH A 226 826 181 HOH HOH . F 5 HOH A 227 827 94 HOH HOH . F 5 HOH A 228 828 169 HOH HOH . F 5 HOH A 229 829 240 HOH HOH . F 5 HOH A 230 830 210 HOH HOH . F 5 HOH A 231 831 226 HOH HOH . F 5 HOH A 232 832 218 HOH HOH . F 5 HOH A 233 833 175 HOH HOH . F 5 HOH A 234 834 159 HOH HOH . F 5 HOH A 235 835 154 HOH HOH . F 5 HOH A 236 836 108 HOH HOH . F 5 HOH A 237 837 102 HOH HOH . F 5 HOH A 238 838 176 HOH HOH . F 5 HOH A 239 839 21 HOH HOH . F 5 HOH A 240 840 63 HOH HOH . F 5 HOH A 241 841 191 HOH HOH . F 5 HOH A 242 842 112 HOH HOH . F 5 HOH A 243 843 123 HOH HOH . F 5 HOH A 244 844 140 HOH HOH . F 5 HOH A 245 845 144 HOH HOH . F 5 HOH A 246 846 207 HOH HOH . F 5 HOH A 247 847 235 HOH HOH . F 5 HOH A 248 848 230 HOH HOH . F 5 HOH A 249 849 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 21.401 32.097 43.964 1 37.37 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . E 4 21.473 32.917 45.117 1 37.5 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . E 4 20.052 31.903 43.424 1 36.05 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . E 4 19.102 31.694 44.432 1 37.4 ? O2 EDO 503 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #