data_6NXZ # _model_server_result.job_id S9ALn2kbL6rO2A-MV32gIA _model_server_result.datetime_utc '2024-11-15 05:59:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nxz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 6NXZ # _exptl.entry_id 6NXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NXZ _cell.length_a 67.617 _cell.length_b 67.617 _cell.length_c 51.977 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 311 n n C1 H1C1 MRD sing 312 n n C1 H1C2 MRD sing 313 n n C1 H1C3 MRD sing 314 n n C2 O2 MRD sing 315 n n C2 CM MRD sing 316 n n C2 C3 MRD sing 317 n n O2 H2 MRD sing 318 n n CM HMC1 MRD sing 319 n n CM HMC2 MRD sing 320 n n CM HMC3 MRD sing 321 n n C3 C4 MRD sing 322 n n C3 H3C1 MRD sing 323 n n C3 H3C2 MRD sing 324 n n C4 O4 MRD sing 325 n n C4 C5 MRD sing 326 n n C4 H4 MRD sing 327 n n O4 HA MRD sing 328 n n C5 H5C1 MRD sing 329 n n C5 H5C2 MRD sing 330 n n C5 H5C3 MRD sing 331 n n # _atom_sites.entry_id 6NXZ _atom_sites.fract_transf_matrix[1][1] 0.014789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019239 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D49 A 1 101 1 D49 D49 . C 3 MRD A 1 102 61 MRD MRD . D 3 MRD A 1 103 62 MRD MRD . E 4 PO4 A 1 104 63 PO4 PO4 . F 5 HOH A 1 201 13 HOH HOH . F 5 HOH A 2 202 27 HOH HOH . F 5 HOH A 3 203 29 HOH HOH . F 5 HOH A 4 204 41 HOH HOH . F 5 HOH A 5 205 52 HOH HOH . F 5 HOH A 6 206 7 HOH HOH . F 5 HOH A 7 207 30 HOH HOH . F 5 HOH A 8 208 10 HOH HOH . F 5 HOH A 9 209 26 HOH HOH . F 5 HOH A 10 210 28 HOH HOH . F 5 HOH A 11 211 34 HOH HOH . F 5 HOH A 12 212 6 HOH HOH . F 5 HOH A 13 213 57 HOH HOH . F 5 HOH A 14 214 14 HOH HOH . F 5 HOH A 15 215 12 HOH HOH . F 5 HOH A 16 216 19 HOH HOH . F 5 HOH A 17 217 17 HOH HOH . F 5 HOH A 18 218 3 HOH HOH . F 5 HOH A 19 219 18 HOH HOH . F 5 HOH A 20 220 15 HOH HOH . F 5 HOH A 21 221 56 HOH HOH . F 5 HOH A 22 222 55 HOH HOH . F 5 HOH A 23 223 2 HOH HOH . F 5 HOH A 24 224 42 HOH HOH . F 5 HOH A 25 225 40 HOH HOH . F 5 HOH A 26 226 1 HOH HOH . F 5 HOH A 27 227 31 HOH HOH . F 5 HOH A 28 228 16 HOH HOH . F 5 HOH A 29 229 49 HOH HOH . F 5 HOH A 30 230 5 HOH HOH . F 5 HOH A 31 231 38 HOH HOH . F 5 HOH A 32 232 8 HOH HOH . F 5 HOH A 33 233 45 HOH HOH . F 5 HOH A 34 234 51 HOH HOH . F 5 HOH A 35 235 24 HOH HOH . F 5 HOH A 36 236 35 HOH HOH . F 5 HOH A 37 237 11 HOH HOH . F 5 HOH A 38 238 25 HOH HOH . F 5 HOH A 39 239 21 HOH HOH . F 5 HOH A 40 240 4 HOH HOH . F 5 HOH A 41 241 32 HOH HOH . F 5 HOH A 42 242 46 HOH HOH . F 5 HOH A 43 243 53 HOH HOH . F 5 HOH A 44 244 47 HOH HOH . F 5 HOH A 45 245 23 HOH HOH . F 5 HOH A 46 246 33 HOH HOH . F 5 HOH A 47 247 43 HOH HOH . F 5 HOH A 48 248 54 HOH HOH . F 5 HOH A 49 249 58 HOH HOH . F 5 HOH A 50 250 48 HOH HOH . F 5 HOH A 51 251 44 HOH HOH . F 5 HOH A 52 252 37 HOH HOH . F 5 HOH A 53 253 22 HOH HOH . F 5 HOH A 54 254 20 HOH HOH . F 5 HOH A 55 255 36 HOH HOH . F 5 HOH A 56 256 9 HOH HOH . F 5 HOH A 57 257 50 HOH HOH . F 5 HOH A 58 258 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . C 3 7.932 -17.368 9.494 1 73.1 ? C1 MRD 102 A 1 HETATM 2 C C2 MRD . . . C 3 6.715 -16.454 9.319 1 71.45 ? C2 MRD 102 A 1 HETATM 3 O O2 MRD . . . C 3 6.298 -15.872 10.585 1 65.9 ? O2 MRD 102 A 1 HETATM 4 C CM MRD . . . C 3 7.096 -15.396 8.277 1 70.11 ? CM MRD 102 A 1 HETATM 5 C C3 MRD . . . C 3 5.552 -17.271 8.791 1 64 ? C3 MRD 102 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #