data_6NYB # _model_server_result.job_id 4SDvT5cZ70g_eEWnYPhXEA _model_server_result.datetime_utc '2024-11-29 19:59:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":901}' # _entry.id 6NYB # _exptl.entry_id 6NYB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.21 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(2-fluoro-4-iodophenyl)amino]-N-(2-hydroxyethoxy)imidazo[1,5-a]pyridine-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NYB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 391 A SER 364 1_555 A N SEP 392 A SEP 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C SEP 392 A SEP 365 1_555 A N ALA 393 A ALA 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C ALA 755 A ALA 728 1_555 A N SEP 756 A SEP 729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C SEP 756 A SEP 729 1_555 A N GLU 757 A GLU 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? metalc ? metalc1 A NE2 HIS 262 A HIS 235 1_555 G ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc2 A SG CYS 275 A CYS 248 1_555 F ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc3 A SG CYS 278 A CYS 251 1_555 F ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc4 A SG CYS 288 A CYS 261 1_555 G ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc5 A SG CYS 291 A CYS 264 1_555 G ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc6 B OD1 ASN 217 B ASN 195 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc7 B OD2 ASP 230 B ASP 208 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc8 H O2B ADP . B ADP 601 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc9 H O1A ADP . B ADP 601 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? # _chem_comp.formula 'C16 H14 F I N4 O3' _chem_comp.formula_weight 456.21 _chem_comp.id LCJ _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(2-fluoro-4-iodophenyl)amino]-N-(2-hydroxyethoxy)imidazo[1,5-a]pyridine-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 N08 LCJ sing 264 n y C16 C11 LCJ doub 265 n y N08 C15 LCJ doub 266 n y C11 C13 LCJ sing 267 n y C11 N06 LCJ sing 268 n y C13 C14 LCJ doub 269 n y C15 N06 LCJ sing 270 n y N06 C10 LCJ sing 271 n y C14 C12 LCJ sing 272 n y C10 C12 LCJ doub 273 n y C10 N07 LCJ sing 274 n n C12 C18 LCJ sing 275 n n N07 C17 LCJ sing 276 n n C20 C17 LCJ doub 277 n y C20 C22 LCJ sing 278 n y C18 O04 LCJ doub 279 n n C18 N09 LCJ sing 280 n n C17 C19 LCJ sing 281 n y C22 C23 LCJ doub 282 n y N09 O03 LCJ sing 283 n n O05 C25 LCJ sing 284 n n C25 C24 LCJ sing 285 n n C19 F02 LCJ sing 286 n n C19 C21 LCJ doub 287 n y C24 O03 LCJ sing 288 n n C23 C21 LCJ sing 289 n y C23 I01 LCJ sing 290 n n C13 H1 LCJ sing 291 n n C14 H2 LCJ sing 292 n n C15 H3 LCJ sing 293 n n C16 H4 LCJ sing 294 n n C20 H5 LCJ sing 295 n n C21 H6 LCJ sing 296 n n C22 H7 LCJ sing 297 n n C24 H8 LCJ sing 298 n n C24 H9 LCJ sing 299 n n C25 H10 LCJ sing 300 n n C25 H11 LCJ sing 301 n n N07 H12 LCJ sing 302 n n N09 H13 LCJ sing 303 n n O05 H14 LCJ sing 304 n n # _atom_sites.entry_id 6NYB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 AGS A 1 801 801 AGS AGS . F 5 ZN A 1 901 901 ZN ZN . G 5 ZN A 1 902 902 ZN ZN . H 6 ADP B 1 601 601 ADP ADP . I 7 MG B 1 602 602 MG MG . J 8 LCJ B 1 901 901 LCJ GDC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 LCJ . . . J 8 84.195 126.142 127.537 1 182.73 ? C10 LCJ 901 B 1 HETATM 2 C C11 LCJ . . . J 8 83.274 125.605 125.435 1 182.73 ? C11 LCJ 901 B 1 HETATM 3 C C12 LCJ . . . J 8 84.651 124.834 127.704 1 182.73 ? C12 LCJ 901 B 1 HETATM 4 C C13 LCJ . . . J 8 83.732 124.266 125.588 1 182.73 ? C13 LCJ 901 B 1 HETATM 5 C C14 LCJ . . . J 8 84.41 123.907 126.718 1 182.73 ? C14 LCJ 901 B 1 HETATM 6 C C15 LCJ . . . J 8 82.968 127.687 125.991 1 182.73 ? C15 LCJ 901 B 1 HETATM 7 C C16 LCJ . . . J 8 82.571 126.245 124.416 1 182.73 ? C16 LCJ 901 B 1 HETATM 8 C C17 LCJ . . . J 8 83.344 127.761 129.328 1 182.73 ? C17 LCJ 901 B 1 HETATM 9 C C18 LCJ . . . J 8 85.419 124.442 128.968 1 182.73 ? C18 LCJ 901 B 1 HETATM 10 C C19 LCJ . . . J 8 83.662 128.52 130.446 1 182.73 ? C19 LCJ 901 B 1 HETATM 11 C C20 LCJ . . . J 8 81.999 127.614 128.979 1 182.73 ? C20 LCJ 901 B 1 HETATM 12 C C21 LCJ . . . J 8 82.664 129.12 131.201 1 182.73 ? C21 LCJ 901 B 1 HETATM 13 C C22 LCJ . . . J 8 81.002 128.213 129.732 1 182.73 ? C22 LCJ 901 B 1 HETATM 14 C C23 LCJ . . . J 8 81.331 128.967 130.846 1 182.73 ? C23 LCJ 901 B 1 HETATM 15 C C24 LCJ . . . J 8 88.244 123.603 130.177 1 182.73 ? C24 LCJ 901 B 1 HETATM 16 C C25 LCJ . . . J 8 89.301 122.634 129.648 1 182.73 ? C25 LCJ 901 B 1 HETATM 17 F F02 LCJ . . . J 8 84.965 128.684 130.811 1 182.73 ? F02 LCJ 901 B 1 HETATM 18 I I01 LCJ . . . J 8 79.814 129.878 131.994 1 182.73 ? I01 LCJ 901 B 1 HETATM 19 N N06 LCJ . . . J 8 83.509 126.486 126.377 1 182.73 ? N06 LCJ 901 B 1 HETATM 20 N N07 LCJ . . . J 8 84.432 127.153 128.562 1 182.73 ? N07 LCJ 901 B 1 HETATM 21 N N08 LCJ . . . J 8 82.394 127.517 124.776 1 182.73 ? N08 LCJ 901 B 1 HETATM 22 N N09 LCJ . . . J 8 86.3 123.281 128.99 1 182.73 ? N09 LCJ 901 B 1 HETATM 23 O O03 LCJ . . . J 8 86.999 122.957 130.164 1 182.73 ? O03 LCJ 901 B 1 HETATM 24 O O04 LCJ . . . J 8 85.314 125.102 129.947 1 182.73 ? O04 LCJ 901 B 1 HETATM 25 O O05 LCJ . . . J 8 90.386 123.382 129.181 1 182.73 ? O05 LCJ 901 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #