data_6NYB
#
_model_server_result.job_id            jRYtp1yNfXxgDTtYo5LRGA 
_model_server_result.datetime_utc      '2024-11-12 22:57:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nyb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":901}' 
#
_entry.id    6NYB 
#
_exptl.entry_id    6NYB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              456.21 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(2-fluoro-4-iodophenyl)amino]-N-(2-hydroxyethoxy)imidazo[1,5-a]pyridine-6-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NYB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NYB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 391 A SER 364 1_555 A N SEP 392 A SEP 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C SEP 392 A SEP 365 1_555 A N ALA 393 A ALA 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 A C ALA 755 A ALA 728 1_555 A N SEP 756 A SEP 729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale4 A C SEP 756 A SEP 729 1_555 A N GLU 757 A GLU 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
metalc ? metalc1 A NE2 HIS 262 A HIS 235 1_555 G ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc2 A SG CYS 275 A CYS 248 1_555 F ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc3 A SG CYS 278 A CYS 251 1_555 F ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc4 A SG CYS 288 A CYS 261 1_555 G ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? 
metalc ? metalc5 A SG CYS 291 A CYS 264 1_555 G ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc6 B OD1 ASN 217 B ASN 195 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc7 B OD2 ASP 230 B ASP 208 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc8 H O2B ADP . B ADP 601 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc9 H O1A ADP . B ADP 601 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
#
_chem_comp.formula           'C16 H14 F I N4 O3' 
_chem_comp.formula_weight    456.21 
_chem_comp.id                LCJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(2-fluoro-4-iodophenyl)amino]-N-(2-hydroxyethoxy)imidazo[1,5-a]pyridine-6-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 N08 LCJ sing 264 n y 
C16 C11 LCJ doub 265 n y 
N08 C15 LCJ doub 266 n y 
C11 C13 LCJ sing 267 n y 
C11 N06 LCJ sing 268 n y 
C13 C14 LCJ doub 269 n y 
C15 N06 LCJ sing 270 n y 
N06 C10 LCJ sing 271 n y 
C14 C12 LCJ sing 272 n y 
C10 C12 LCJ doub 273 n y 
C10 N07 LCJ sing 274 n n 
C12 C18 LCJ sing 275 n n 
N07 C17 LCJ sing 276 n n 
C20 C17 LCJ doub 277 n y 
C20 C22 LCJ sing 278 n y 
C18 O04 LCJ doub 279 n n 
C18 N09 LCJ sing 280 n n 
C17 C19 LCJ sing 281 n y 
C22 C23 LCJ doub 282 n y 
N09 O03 LCJ sing 283 n n 
O05 C25 LCJ sing 284 n n 
C25 C24 LCJ sing 285 n n 
C19 F02 LCJ sing 286 n n 
C19 C21 LCJ doub 287 n y 
C24 O03 LCJ sing 288 n n 
C23 C21 LCJ sing 289 n y 
C23 I01 LCJ sing 290 n n 
C13 H1 LCJ sing 291 n n 
C14 H2 LCJ sing 292 n n 
C15 H3 LCJ sing 293 n n 
C16 H4 LCJ sing 294 n n 
C20 H5 LCJ sing 295 n n 
C21 H6 LCJ sing 296 n n 
C22 H7 LCJ sing 297 n n 
C24 H8 LCJ sing 298 n n 
C24 H9 LCJ sing 299 n n 
C25 H10 LCJ sing 300 n n 
C25 H11 LCJ sing 301 n n 
N07 H12 LCJ sing 302 n n 
N09 H13 LCJ sing 303 n n 
O05 H14 LCJ sing 304 n n 
#
_atom_sites.entry_id                     6NYB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 AGS A 1 801 801 AGS AGS . 
F 5 ZN A 1 901 901 ZN ZN . 
G 5 ZN A 1 902 902 ZN ZN . 
H 6 ADP B 1 601 601 ADP ADP . 
I 7 MG B 1 602 602 MG MG . 
J 8 LCJ B 1 901 901 LCJ GDC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 LCJ . . . J 8 84.195 126.142 127.537 1 182.73 ? C10 LCJ 901 B 1 
HETATM 2 C C11 LCJ . . . J 8 83.274 125.605 125.435 1 182.73 ? C11 LCJ 901 B 1 
HETATM 3 C C12 LCJ . . . J 8 84.651 124.834 127.704 1 182.73 ? C12 LCJ 901 B 1 
HETATM 4 C C13 LCJ . . . J 8 83.732 124.266 125.588 1 182.73 ? C13 LCJ 901 B 1 
HETATM 5 C C14 LCJ . . . J 8 84.41 123.907 126.718 1 182.73 ? C14 LCJ 901 B 1 
HETATM 6 C C15 LCJ . . . J 8 82.968 127.687 125.991 1 182.73 ? C15 LCJ 901 B 1 
HETATM 7 C C16 LCJ . . . J 8 82.571 126.245 124.416 1 182.73 ? C16 LCJ 901 B 1 
HETATM 8 C C17 LCJ . . . J 8 83.344 127.761 129.328 1 182.73 ? C17 LCJ 901 B 1 
HETATM 9 C C18 LCJ . . . J 8 85.419 124.442 128.968 1 182.73 ? C18 LCJ 901 B 1 
HETATM 10 C C19 LCJ . . . J 8 83.662 128.52 130.446 1 182.73 ? C19 LCJ 901 B 1 
HETATM 11 C C20 LCJ . . . J 8 81.999 127.614 128.979 1 182.73 ? C20 LCJ 901 B 1 
HETATM 12 C C21 LCJ . . . J 8 82.664 129.12 131.201 1 182.73 ? C21 LCJ 901 B 1 
HETATM 13 C C22 LCJ . . . J 8 81.002 128.213 129.732 1 182.73 ? C22 LCJ 901 B 1 
HETATM 14 C C23 LCJ . . . J 8 81.331 128.967 130.846 1 182.73 ? C23 LCJ 901 B 1 
HETATM 15 C C24 LCJ . . . J 8 88.244 123.603 130.177 1 182.73 ? C24 LCJ 901 B 1 
HETATM 16 C C25 LCJ . . . J 8 89.301 122.634 129.648 1 182.73 ? C25 LCJ 901 B 1 
HETATM 17 F F02 LCJ . . . J 8 84.965 128.684 130.811 1 182.73 ? F02 LCJ 901 B 1 
HETATM 18 I I01 LCJ . . . J 8 79.814 129.878 131.994 1 182.73 ? I01 LCJ 901 B 1 
HETATM 19 N N06 LCJ . . . J 8 83.509 126.486 126.377 1 182.73 ? N06 LCJ 901 B 1 
HETATM 20 N N07 LCJ . . . J 8 84.432 127.153 128.562 1 182.73 ? N07 LCJ 901 B 1 
HETATM 21 N N08 LCJ . . . J 8 82.394 127.517 124.776 1 182.73 ? N08 LCJ 901 B 1 
HETATM 22 N N09 LCJ . . . J 8 86.3 123.281 128.99 1 182.73 ? N09 LCJ 901 B 1 
HETATM 23 O O03 LCJ . . . J 8 86.999 122.957 130.164 1 182.73 ? O03 LCJ 901 B 1 
HETATM 24 O O04 LCJ . . . J 8 85.314 125.102 129.947 1 182.73 ? O04 LCJ 901 B 1 
HETATM 25 O O05 LCJ . . . J 8 90.386 123.382 129.181 1 182.73 ? O05 LCJ 901 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#