data_6NYD # _model_server_result.job_id 6lmP3U3UjZLnrzrIWSMn-g _model_server_result.datetime_utc '2024-11-15 17:21:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nyd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6NYD # _exptl.entry_id 6NYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NYD _cell.length_a 40.084 _cell.length_b 49.022 _cell.length_c 103.684 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 32 C HIS 30 1_555 D ZN ZN . C ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc2 A OE2 GLU 34 C GLU 32 1_555 D ZN ZN . C ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc3 A OD1 ASP 54 C ASP 52 1_555 B ZN ZN . C ZN 701 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc4 A OD2 ASP 54 C ASP 52 1_555 B ZN ZN . C ZN 701 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 A NE2 HIS 58 C HIS 56 1_555 E ZN ZN . C ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc6 A SG CYS 97 C CYS 95 1_555 B ZN ZN . C ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc7 A NE2 HIS 102 C HIS 100 1_555 B ZN ZN . C ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc8 D ZN ZN . C ZN 703 1_555 I O HOH . C HOH 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc9 D ZN ZN . C ZN 703 1_555 I O HOH . C HOH 897 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc10 E ZN ZN . C ZN 704 1_555 I O HOH . C HOH 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6NYD _atom_sites.fract_transf_matrix[1][1] 0.024948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020399 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN C 1 701 701 ZN ZN . C 2 ZN C 1 702 703 ZN ZN . D 2 ZN C 1 703 704 ZN ZN . E 2 ZN C 1 704 705 ZN ZN . F 3 ACT C 1 705 1 ACT ACT . G 3 ACT C 1 706 3 ACT ACT . H 3 ACT C 1 707 4 ACT ACT . I 4 HOH C 1 801 41 HOH HOH . I 4 HOH C 2 802 88 HOH HOH . I 4 HOH C 3 803 29 HOH HOH . I 4 HOH C 4 804 125 HOH HOH . I 4 HOH C 5 805 47 HOH HOH . I 4 HOH C 6 806 53 HOH HOH . I 4 HOH C 7 807 70 HOH HOH . I 4 HOH C 8 808 27 HOH HOH . I 4 HOH C 9 809 74 HOH HOH . I 4 HOH C 10 810 72 HOH HOH . I 4 HOH C 11 811 63 HOH HOH . I 4 HOH C 12 812 39 HOH HOH . I 4 HOH C 13 813 19 HOH HOH . I 4 HOH C 14 814 13 HOH HOH . I 4 HOH C 15 815 24 HOH HOH . I 4 HOH C 16 816 98 HOH HOH . I 4 HOH C 17 817 18 HOH HOH . I 4 HOH C 18 818 92 HOH HOH . I 4 HOH C 19 819 55 HOH HOH . I 4 HOH C 20 820 22 HOH HOH . I 4 HOH C 21 821 5 HOH HOH . I 4 HOH C 22 822 25 HOH HOH . I 4 HOH C 23 823 37 HOH HOH . I 4 HOH C 24 824 15 HOH HOH . I 4 HOH C 25 825 49 HOH HOH . I 4 HOH C 26 826 1 HOH HOH . I 4 HOH C 27 827 4 HOH HOH . I 4 HOH C 28 828 9 HOH HOH . I 4 HOH C 29 829 86 HOH HOH . I 4 HOH C 30 830 100 HOH HOH . I 4 HOH C 31 831 56 HOH HOH . I 4 HOH C 32 832 2 HOH HOH . I 4 HOH C 33 833 137 HOH HOH . I 4 HOH C 34 834 102 HOH HOH . I 4 HOH C 35 835 76 HOH HOH . I 4 HOH C 36 836 91 HOH HOH . I 4 HOH C 37 837 106 HOH HOH . I 4 HOH C 38 838 84 HOH HOH . I 4 HOH C 39 839 71 HOH HOH . I 4 HOH C 40 840 26 HOH HOH . I 4 HOH C 41 841 46 HOH HOH . I 4 HOH C 42 842 78 HOH HOH . I 4 HOH C 43 843 51 HOH HOH . I 4 HOH C 44 844 3 HOH HOH . I 4 HOH C 45 845 48 HOH HOH . I 4 HOH C 46 846 42 HOH HOH . I 4 HOH C 47 847 77 HOH HOH . I 4 HOH C 48 848 38 HOH HOH . I 4 HOH C 49 849 93 HOH HOH . I 4 HOH C 50 850 6 HOH HOH . I 4 HOH C 51 851 17 HOH HOH . I 4 HOH C 52 852 7 HOH HOH . I 4 HOH C 53 853 58 HOH HOH . I 4 HOH C 54 854 36 HOH HOH . I 4 HOH C 55 855 35 HOH HOH . I 4 HOH C 56 856 45 HOH HOH . I 4 HOH C 57 857 85 HOH HOH . I 4 HOH C 58 858 90 HOH HOH . I 4 HOH C 59 859 8 HOH HOH . I 4 HOH C 60 860 64 HOH HOH . I 4 HOH C 61 861 50 HOH HOH . I 4 HOH C 62 862 61 HOH HOH . I 4 HOH C 63 863 11 HOH HOH . I 4 HOH C 64 864 57 HOH HOH . I 4 HOH C 65 865 59 HOH HOH . I 4 HOH C 66 866 16 HOH HOH . I 4 HOH C 67 867 60 HOH HOH . I 4 HOH C 68 868 96 HOH HOH . I 4 HOH C 69 869 69 HOH HOH . I 4 HOH C 70 870 34 HOH HOH . I 4 HOH C 71 871 135 HOH HOH . I 4 HOH C 72 872 30 HOH HOH . I 4 HOH C 73 873 122 HOH HOH . I 4 HOH C 74 874 79 HOH HOH . I 4 HOH C 75 875 33 HOH HOH . I 4 HOH C 76 876 28 HOH HOH . I 4 HOH C 77 877 14 HOH HOH . I 4 HOH C 78 878 44 HOH HOH . I 4 HOH C 79 879 94 HOH HOH . I 4 HOH C 80 880 10 HOH HOH . I 4 HOH C 81 881 32 HOH HOH . I 4 HOH C 82 882 145 HOH HOH . I 4 HOH C 83 883 144 HOH HOH . I 4 HOH C 84 884 142 HOH HOH . I 4 HOH C 85 885 52 HOH HOH . I 4 HOH C 86 886 65 HOH HOH . I 4 HOH C 87 887 54 HOH HOH . I 4 HOH C 88 888 123 HOH HOH . I 4 HOH C 89 889 68 HOH HOH . I 4 HOH C 90 890 23 HOH HOH . I 4 HOH C 91 891 95 HOH HOH . I 4 HOH C 92 892 20 HOH HOH . I 4 HOH C 93 893 40 HOH HOH . I 4 HOH C 94 894 134 HOH HOH . I 4 HOH C 95 895 43 HOH HOH . I 4 HOH C 96 896 149 HOH HOH . I 4 HOH C 97 897 89 HOH HOH . I 4 HOH C 98 898 87 HOH HOH . I 4 HOH C 99 899 21 HOH HOH . I 4 HOH C 100 900 81 HOH HOH . I 4 HOH C 101 901 31 HOH HOH . I 4 HOH C 102 902 12 HOH HOH . I 4 HOH C 103 903 101 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -1.981 _atom_site.Cartn_y -1.359 _atom_site.Cartn_z -17.117 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 701 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 1 #