data_6NYH # _model_server_result.job_id 1StU_v5TWBBBXJiVgrelGA _model_server_result.datetime_utc '2024-12-21 18:38:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 6NYH # _exptl.entry_id 6NYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.475 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-N-[(3S)-7-methoxy-1-methyl-2-oxo-2,3,4,5-tetrahydro-1H-pyrido[3,4-b]azepin-3-yl]-5-phenyl-6,7-dihydro-5H-pyrrolo[1,2-b][1,2,4]triazole-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NYH _cell.length_a 46.98 _cell.length_b 97.034 _cell.length_c 125.238 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C23 H24 N6 O3' _chem_comp.formula_weight 432.475 _chem_comp.id L8D _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-N-[(3S)-7-methoxy-1-methyl-2-oxo-2,3,4,5-tetrahydro-1H-pyrido[3,4-b]azepin-3-yl]-5-phenyl-6,7-dihydro-5H-pyrrolo[1,2-b][1,2,4]triazole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C24 L8D sing 173 n n C23 C22 L8D sing 174 n n C24 C19 L8D sing 175 n n C22 C25 L8D sing 176 n n C22 N20 L8D sing 177 n n C30 C25 L8D doub 178 n y C30 C29 L8D sing 179 n y C25 C26 L8D sing 180 n y C19 N20 L8D sing 181 n y C19 N18 L8D doub 182 n y N20 N21 L8D sing 183 n y C29 C28 L8D doub 184 n y C26 C27 L8D doub 185 n y N18 C17 L8D sing 186 n y N21 C17 L8D doub 187 n y C28 C27 L8D sing 188 n y C17 C15 L8D sing 189 n n C15 O16 L8D doub 190 n n C15 N14 L8D sing 191 n n O13 C12 L8D doub 192 n n N14 C11 L8D sing 193 n n C12 C11 L8D sing 194 n n C12 N2 L8D sing 195 n n C1 N2 L8D sing 196 n n C11 C10 L8D sing 197 n n N2 C3 L8D sing 198 n n C4 C3 L8D doub 199 n y C4 N5 L8D sing 200 n y C3 C8 L8D sing 201 n y N5 C6 L8D doub 202 n y C10 C9 L8D sing 203 n n C8 C9 L8D sing 204 n n C8 C7 L8D doub 205 n y C6 C7 L8D sing 206 n y C6 O31 L8D sing 207 n n C32 O31 L8D sing 208 n n C4 H1 L8D sing 209 n n C11 H2 L8D sing 210 n n C7 H3 L8D sing 211 n n C9 H4 L8D sing 212 n n C9 H5 L8D sing 213 n n C10 H6 L8D sing 214 n n C10 H7 L8D sing 215 n n C1 H8 L8D sing 216 n n C1 H9 L8D sing 217 n n C1 H10 L8D sing 218 n n N14 H11 L8D sing 219 n n C22 H12 L8D sing 220 n n C23 H13 L8D sing 221 n n C23 H14 L8D sing 222 n n C24 H15 L8D sing 223 n n C24 H16 L8D sing 224 n n C26 H17 L8D sing 225 n n C27 H18 L8D sing 226 n n C28 H19 L8D sing 227 n n C29 H20 L8D sing 228 n n C30 H21 L8D sing 229 n n C32 H22 L8D sing 230 n n C32 H23 L8D sing 231 n n C32 H24 L8D sing 232 n n # _atom_sites.entry_id 6NYH _atom_sites.fract_transf_matrix[1][1] 0.021286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 L8D A 1 301 3 L8D DRG . D 3 IOD A 1 302 1 IOD IOD . E 3 IOD A 1 303 2 IOD IOD . F 3 IOD A 1 304 3 IOD IOD . G 2 L8D B 1 301 2 L8D DRG . H 3 IOD B 1 302 5 IOD IOD . I 3 IOD B 1 303 6 IOD IOD . J 3 IOD B 1 304 7 IOD IOD . K 4 HOH A 1 401 82 HOH HOH . K 4 HOH A 2 402 135 HOH HOH . K 4 HOH A 3 403 55 HOH HOH . K 4 HOH A 4 404 160 HOH HOH . K 4 HOH A 5 405 195 HOH HOH . K 4 HOH A 6 406 184 HOH HOH . K 4 HOH A 7 407 56 HOH HOH . K 4 HOH A 8 408 104 HOH HOH . K 4 HOH A 9 409 25 HOH HOH . K 4 HOH A 10 410 134 HOH HOH . K 4 HOH A 11 411 61 HOH HOH . K 4 HOH A 12 412 159 HOH HOH . K 4 HOH A 13 413 185 HOH HOH . K 4 HOH A 14 414 176 HOH HOH . K 4 HOH A 15 415 164 HOH HOH . K 4 HOH A 16 416 3 HOH HOH . K 4 HOH A 17 417 99 HOH HOH . K 4 HOH A 18 418 72 HOH HOH . K 4 HOH A 19 419 120 HOH HOH . K 4 HOH A 20 420 45 HOH HOH . K 4 HOH A 21 421 2 HOH HOH . K 4 HOH A 22 422 86 HOH HOH . K 4 HOH A 23 423 54 HOH HOH . K 4 HOH A 24 424 194 HOH HOH . K 4 HOH A 25 425 121 HOH HOH . K 4 HOH A 26 426 8 HOH HOH . K 4 HOH A 27 427 22 HOH HOH . K 4 HOH A 28 428 123 HOH HOH . K 4 HOH A 29 429 37 HOH HOH . K 4 HOH A 30 430 58 HOH HOH . K 4 HOH A 31 431 127 HOH HOH . K 4 HOH A 32 432 106 HOH HOH . K 4 HOH A 33 433 154 HOH HOH . K 4 HOH A 34 434 18 HOH HOH . K 4 HOH A 35 435 87 HOH HOH . K 4 HOH A 36 436 7 HOH HOH . K 4 HOH A 37 437 83 HOH HOH . K 4 HOH A 38 438 5 HOH HOH . K 4 HOH A 39 439 88 HOH HOH . K 4 HOH A 40 440 66 HOH HOH . K 4 HOH A 41 441 161 HOH HOH . K 4 HOH A 42 442 91 HOH HOH . K 4 HOH A 43 443 97 HOH HOH . K 4 HOH A 44 444 1 HOH HOH . K 4 HOH A 45 445 145 HOH HOH . K 4 HOH A 46 446 59 HOH HOH . K 4 HOH A 47 447 32 HOH HOH . K 4 HOH A 48 448 6 HOH HOH . K 4 HOH A 49 449 102 HOH HOH . K 4 HOH A 50 450 38 HOH HOH . K 4 HOH A 51 451 60 HOH HOH . K 4 HOH A 52 452 146 HOH HOH . K 4 HOH A 53 453 126 HOH HOH . K 4 HOH A 54 454 150 HOH HOH . K 4 HOH A 55 455 17 HOH HOH . K 4 HOH A 56 456 183 HOH HOH . K 4 HOH A 57 457 34 HOH HOH . K 4 HOH A 58 458 78 HOH HOH . K 4 HOH A 59 459 115 HOH HOH . K 4 HOH A 60 460 175 HOH HOH . K 4 HOH A 61 461 155 HOH HOH . K 4 HOH A 62 462 48 HOH HOH . K 4 HOH A 63 463 28 HOH HOH . K 4 HOH A 64 464 68 HOH HOH . K 4 HOH A 65 465 112 HOH HOH . K 4 HOH A 66 466 148 HOH HOH . K 4 HOH A 67 467 111 HOH HOH . K 4 HOH A 68 468 170 HOH HOH . K 4 HOH A 69 469 151 HOH HOH . K 4 HOH A 70 470 128 HOH HOH . K 4 HOH A 71 471 157 HOH HOH . K 4 HOH A 72 472 81 HOH HOH . K 4 HOH A 73 473 167 HOH HOH . K 4 HOH A 74 474 93 HOH HOH . K 4 HOH A 75 475 53 HOH HOH . K 4 HOH A 76 476 77 HOH HOH . K 4 HOH A 77 477 30 HOH HOH . K 4 HOH A 78 478 131 HOH HOH . K 4 HOH A 79 479 31 HOH HOH . K 4 HOH A 80 480 33 HOH HOH . K 4 HOH A 81 481 130 HOH HOH . K 4 HOH A 82 482 169 HOH HOH . K 4 HOH A 83 483 100 HOH HOH . K 4 HOH A 84 484 103 HOH HOH . K 4 HOH A 85 485 85 HOH HOH . K 4 HOH A 86 486 57 HOH HOH . K 4 HOH A 87 487 14 HOH HOH . K 4 HOH A 88 488 84 HOH HOH . K 4 HOH A 89 489 95 HOH HOH . K 4 HOH A 90 490 132 HOH HOH . K 4 HOH A 91 491 109 HOH HOH . K 4 HOH A 92 492 192 HOH HOH . K 4 HOH A 93 493 193 HOH HOH . K 4 HOH A 94 494 191 HOH HOH . K 4 HOH A 95 495 129 HOH HOH . K 4 HOH A 96 496 105 HOH HOH . K 4 HOH A 97 497 158 HOH HOH . K 4 HOH A 98 498 177 HOH HOH . L 4 HOH B 1 401 94 HOH HOH . L 4 HOH B 2 402 117 HOH HOH . L 4 HOH B 3 403 29 HOH HOH . L 4 HOH B 4 404 138 HOH HOH . L 4 HOH B 5 405 137 HOH HOH . L 4 HOH B 6 406 116 HOH HOH . L 4 HOH B 7 407 47 HOH HOH . L 4 HOH B 8 408 153 HOH HOH . L 4 HOH B 9 409 124 HOH HOH . L 4 HOH B 10 410 62 HOH HOH . L 4 HOH B 11 411 73 HOH HOH . L 4 HOH B 12 412 21 HOH HOH . L 4 HOH B 13 413 27 HOH HOH . L 4 HOH B 14 414 69 HOH HOH . L 4 HOH B 15 415 98 HOH HOH . L 4 HOH B 16 416 125 HOH HOH . L 4 HOH B 17 417 67 HOH HOH . L 4 HOH B 18 418 13 HOH HOH . L 4 HOH B 19 419 24 HOH HOH . L 4 HOH B 20 420 65 HOH HOH . L 4 HOH B 21 421 119 HOH HOH . L 4 HOH B 22 422 133 HOH HOH . L 4 HOH B 23 423 79 HOH HOH . L 4 HOH B 24 424 52 HOH HOH . L 4 HOH B 25 425 162 HOH HOH . L 4 HOH B 26 426 113 HOH HOH . L 4 HOH B 27 427 16 HOH HOH . L 4 HOH B 28 428 36 HOH HOH . L 4 HOH B 29 429 172 HOH HOH . L 4 HOH B 30 430 44 HOH HOH . L 4 HOH B 31 431 76 HOH HOH . L 4 HOH B 32 432 49 HOH HOH . L 4 HOH B 33 433 178 HOH HOH . L 4 HOH B 34 434 9 HOH HOH . L 4 HOH B 35 435 147 HOH HOH . L 4 HOH B 36 436 92 HOH HOH . L 4 HOH B 37 437 19 HOH HOH . L 4 HOH B 38 438 43 HOH HOH . L 4 HOH B 39 439 96 HOH HOH . L 4 HOH B 40 440 12 HOH HOH . L 4 HOH B 41 441 63 HOH HOH . L 4 HOH B 42 442 35 HOH HOH . L 4 HOH B 43 443 89 HOH HOH . L 4 HOH B 44 444 10 HOH HOH . L 4 HOH B 45 445 188 HOH HOH . L 4 HOH B 46 446 180 HOH HOH . L 4 HOH B 47 447 171 HOH HOH . L 4 HOH B 48 448 141 HOH HOH . L 4 HOH B 49 449 11 HOH HOH . L 4 HOH B 50 450 80 HOH HOH . L 4 HOH B 51 451 181 HOH HOH . L 4 HOH B 52 452 110 HOH HOH . L 4 HOH B 53 453 51 HOH HOH . L 4 HOH B 54 454 75 HOH HOH . L 4 HOH B 55 455 50 HOH HOH . L 4 HOH B 56 456 39 HOH HOH . L 4 HOH B 57 457 90 HOH HOH . L 4 HOH B 58 458 149 HOH HOH . L 4 HOH B 59 459 107 HOH HOH . L 4 HOH B 60 460 64 HOH HOH . L 4 HOH B 61 461 174 HOH HOH . L 4 HOH B 62 462 198 HOH HOH . L 4 HOH B 63 463 114 HOH HOH . L 4 HOH B 64 464 15 HOH HOH . L 4 HOH B 65 465 143 HOH HOH . L 4 HOH B 66 466 46 HOH HOH . L 4 HOH B 67 467 4 HOH HOH . L 4 HOH B 68 468 26 HOH HOH . L 4 HOH B 69 469 152 HOH HOH . L 4 HOH B 70 470 23 HOH HOH . L 4 HOH B 71 471 173 HOH HOH . L 4 HOH B 72 472 144 HOH HOH . L 4 HOH B 73 473 71 HOH HOH . L 4 HOH B 74 474 168 HOH HOH . L 4 HOH B 75 475 42 HOH HOH . L 4 HOH B 76 476 70 HOH HOH . L 4 HOH B 77 477 156 HOH HOH . L 4 HOH B 78 478 139 HOH HOH . L 4 HOH B 79 479 101 HOH HOH . L 4 HOH B 80 480 122 HOH HOH . L 4 HOH B 81 481 40 HOH HOH . L 4 HOH B 82 482 201 HOH HOH . L 4 HOH B 83 483 136 HOH HOH . L 4 HOH B 84 484 179 HOH HOH . L 4 HOH B 85 485 187 HOH HOH . L 4 HOH B 86 486 203 HOH HOH . L 4 HOH B 87 487 197 HOH HOH . L 4 HOH B 88 488 20 HOH HOH . L 4 HOH B 89 489 200 HOH HOH . L 4 HOH B 90 490 165 HOH HOH . L 4 HOH B 91 491 186 HOH HOH . L 4 HOH B 92 492 142 HOH HOH . L 4 HOH B 93 493 108 HOH HOH . L 4 HOH B 94 494 74 HOH HOH . L 4 HOH B 95 495 189 HOH HOH . L 4 HOH B 96 496 199 HOH HOH . L 4 HOH B 97 497 41 HOH HOH . L 4 HOH B 98 498 118 HOH HOH . L 4 HOH B 99 499 202 HOH HOH . L 4 HOH B 100 500 163 HOH HOH . L 4 HOH B 101 501 190 HOH HOH . L 4 HOH B 102 502 140 HOH HOH . L 4 HOH B 103 503 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 L8D . . . G 2 2.924 -8.016 -5.875 1 33.91 ? C4 L8D 301 B 1 HETATM 2 C C6 L8D . . . G 2 3.452 -6.652 -4.114 1 35.7 ? C6 L8D 301 B 1 HETATM 3 C C11 L8D . . . G 2 -0.566 -6.456 -6.547 1 34.87 ? C11 L8D 301 B 1 HETATM 4 C C7 L8D . . . G 2 2.122 -6.501 -3.742 1 35.27 ? C7 L8D 301 B 1 HETATM 5 C C8 L8D . . . G 2 1.16 -7.152 -4.482 1 38.88 ? C8 L8D 301 B 1 HETATM 6 C C9 L8D . . . G 2 -0.295 -7.03 -4.118 1 33.69 ? C9 L8D 301 B 1 HETATM 7 C C10 L8D . . . G 2 -1.022 -6.13 -5.119 1 33.64 ? C10 L8D 301 B 1 HETATM 8 C C12 L8D . . . G 2 -0.407 -7.927 -6.83 1 36.23 ? C12 L8D 301 B 1 HETATM 9 N N2 L8D . . . G 2 0.651 -8.596 -6.357 1 37.23 ? N2 L8D 301 B 1 HETATM 10 C C3 L8D . . . G 2 1.582 -7.915 -5.575 1 32.89 ? C3 L8D 301 B 1 HETATM 11 C C1 L8D . . . G 2 0.826 -10.022 -6.655 1 37.34 ? C1 L8D 301 B 1 HETATM 12 N N5 L8D . . . G 2 3.811 -7.393 -5.142 1 32.36 ? N5 L8D 301 B 1 HETATM 13 O O13 L8D . . . G 2 -1.224 -8.508 -7.52 1 39.51 ? O13 L8D 301 B 1 HETATM 14 N N14 L8D . . . G 2 -1.558 -6 -7.5 1 31.61 ? N14 L8D 301 B 1 HETATM 15 C C15 L8D . . . G 2 -1.518 -4.733 -7.94 1 34.45 ? C15 L8D 301 B 1 HETATM 16 O O16 L8D . . . G 2 -0.647 -3.969 -7.558 1 32.66 ? O16 L8D 301 B 1 HETATM 17 C C17 L8D . . . G 2 -2.522 -4.297 -8.918 1 30.07 ? C17 L8D 301 B 1 HETATM 18 N N18 L8D . . . G 2 -3.472 -5.063 -9.49 1 34.7 ? N18 L8D 301 B 1 HETATM 19 C C19 L8D . . . G 2 -4.126 -4.276 -10.321 1 33.14 ? C19 L8D 301 B 1 HETATM 20 N N20 L8D . . . G 2 -3.578 -3.058 -10.246 1 30.15 ? N20 L8D 301 B 1 HETATM 21 N N21 L8D . . . G 2 -2.606 -3.092 -9.409 1 29.63 ? N21 L8D 301 B 1 HETATM 22 C C22 L8D . . . G 2 -4.223 -2.109 -11.155 1 34.59 ? C22 L8D 301 B 1 HETATM 23 C C23 L8D . . . G 2 -5.547 -2.77 -11.584 1 36.17 ? C23 L8D 301 B 1 HETATM 24 C C24 L8D . . . G 2 -5.266 -4.268 -11.32 1 34.07 ? C24 L8D 301 B 1 HETATM 25 C C25 L8D . . . G 2 -4.439 -0.797 -10.442 1 32.67 ? C25 L8D 301 B 1 HETATM 26 C C26 L8D . . . G 2 -5.511 -0.64 -9.577 1 34.23 ? C26 L8D 301 B 1 HETATM 27 C C27 L8D . . . G 2 -5.712 0.562 -8.927 1 34.33 ? C27 L8D 301 B 1 HETATM 28 C C28 L8D . . . G 2 -4.827 1.612 -9.133 1 30.7 ? C28 L8D 301 B 1 HETATM 29 C C29 L8D . . . G 2 -3.75 1.45 -9.993 1 30.63 ? C29 L8D 301 B 1 HETATM 30 C C30 L8D . . . G 2 -3.556 0.244 -10.644 1 31.41 ? C30 L8D 301 B 1 HETATM 31 O O31 L8D . . . G 2 4.406 -6.031 -3.393 1 36.51 ? O31 L8D 301 B 1 HETATM 32 C C32 L8D . . . G 2 5.755 -6.456 -3.605 1 39.43 ? C32 L8D 301 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #