data_6NYP
#
_model_server_result.job_id            sIPWGsy4PLDsH0VeQbHrpg 
_model_server_result.datetime_utc      '2024-11-26 21:41:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nyp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":201}' 
#
_entry.id    6NYP 
#
_exptl.entry_id    6NYP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.67 
_cell.angle_gamma         90 
_cell.entry_id            6NYP 
_cell.length_a            66.99 
_cell.length_b            77.2 
_cell.length_c            101.72 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NYP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,I,J,K,P,S,X 1 1 
B,H,R,T,Z 2 1 
C,G,L,Q,U,Y 3 1 
D,E,M,N,O,V,W 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 34 1_555 A SG CYS 33 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 28 A CYS 58 1_555 A SG CYS 85 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 42 A CYS 72 1_555 A SG CYS 49 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 B SG CYS 28 B CYS 58 1_555 B SG CYS 85 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
disulf ? disulf5 B SG CYS 42 B CYS 72 1_555 B SG CYS 49 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 C SG CYS 4 C CYS 34 1_555 C SG CYS 33 C CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf7 C SG CYS 28 C CYS 58 1_555 C SG CYS 85 C CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
disulf ? disulf8 C SG CYS 42 C CYS 72 1_555 C SG CYS 49 C CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 D SG CYS 4 D CYS 34 1_555 D SG CYS 33 D CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf10 D SG CYS 28 D CYS 58 1_555 D SG CYS 85 D CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf11 D SG CYS 42 D CYS 72 1_555 D SG CYS 49 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf12 E SG CYS 3 E CYS 23 1_555 E SG CYS 14 E CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf13 E SG CYS 15 E CYS 35 1_555 E SG CYS 28 E CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf14 E SG CYS 18 E CYS 38 1_555 E SG CYS 36 E CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf15 E SG CYS 39 E CYS 59 1_555 E SG CYS 51 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf16 E SG CYS 54 E CYS 74 1_555 E SG CYS 67 E CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf17 F SG CYS 3 F CYS 23 1_555 F SG CYS 14 F CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf18 F SG CYS 15 F CYS 35 1_555 F SG CYS 28 F CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf19 F SG CYS 18 F CYS 38 1_555 F SG CYS 36 F CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf20 F SG CYS 39 F CYS 59 1_555 F SG CYS 51 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf21 F SG CYS 54 F CYS 74 1_555 F SG CYS 67 F CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf22 F SG CYS 57 F CYS 77 1_555 F SG CYS 75 F CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf23 G SG CYS 3 G CYS 23 1_555 G SG CYS 14 G CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf24 G SG CYS 15 G CYS 35 1_555 G SG CYS 28 G CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf25 G SG CYS 18 G CYS 38 1_555 G SG CYS 36 G CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf26 G SG CYS 39 G CYS 59 1_555 G SG CYS 51 G CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf27 G SG CYS 54 G CYS 74 1_555 G SG CYS 67 G CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf28 G SG CYS 57 G CYS 77 1_555 G SG CYS 75 G CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf29 H SG CYS 3 H CYS 23 1_555 H SG CYS 14 H CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf30 H SG CYS 15 H CYS 35 1_555 H SG CYS 28 H CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf31 H SG CYS 18 H CYS 38 1_555 H SG CYS 36 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf32 H SG CYS 39 H CYS 59 1_555 H SG CYS 51 H CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf33 H SG CYS 54 H CYS 74 1_555 H SG CYS 67 H CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf34 H SG CYS 57 H CYS 77 1_555 H SG CYS 75 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 F ND2 ASN 66 F ASN 86 1_555 P C1 NAG . F NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 H ND2 ASN 66 H ASN 86 1_555 R C1 NAG . H NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
metalc ? metalc1 A O LEU 8 A LEU 38 1_555 K NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc2 A O ILE 10 A ILE 40 1_555 K NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? 
metalc ? metalc3 D O LEU 8 D LEU 38 1_555 O NA NA . D NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? 
metalc ? metalc4 D O ILE 10 D ILE 40 1_555 O NA NA . D NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 314 n n 
S O2 SO4 doub 315 n n 
S O3 SO4 sing 316 n n 
S O4 SO4 sing 317 n n 
#
_atom_sites.entry_id                     6NYP 
_atom_sites.fract_transf_matrix[1][1]    0.014928 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000435 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012953 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009835 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GOL A 1 601 601 GOL GOL . 
J 4 SO4 A 1 602 6 SO4 SO4 . 
K 5 NA A 1 603 3 NA NA . 
L 4 SO4 C 1 201 5 SO4 SO4 . 
M 4 SO4 D 1 201 1 SO4 SO4 . 
N 4 SO4 D 1 202 2 SO4 SO4 . 
O 5 NA D 1 203 2 NA NA . 
P 6 NAG F 1 201 99 NAG NAG . 
Q 4 SO4 G 1 201 9 SO4 SO4 . 
R 6 NAG H 1 201 99 NAG NAG . 
S 7 HOH A 1 701 26 HOH HOH . 
S 7 HOH A 2 702 137 HOH HOH . 
S 7 HOH A 3 703 164 HOH HOH . 
S 7 HOH A 4 704 11 HOH HOH . 
S 7 HOH A 5 705 20 HOH HOH . 
S 7 HOH A 6 706 89 HOH HOH . 
S 7 HOH A 7 707 163 HOH HOH . 
T 7 HOH B 1 201 83 HOH HOH . 
T 7 HOH B 2 202 115 HOH HOH . 
T 7 HOH B 3 203 116 HOH HOH . 
U 7 HOH C 1 301 135 HOH HOH . 
U 7 HOH C 2 302 15 HOH HOH . 
U 7 HOH C 3 303 94 HOH HOH . 
V 7 HOH D 1 301 159 HOH HOH . 
V 7 HOH D 2 302 16 HOH HOH . 
V 7 HOH D 3 303 134 HOH HOH . 
V 7 HOH D 4 304 54 HOH HOH . 
V 7 HOH D 5 305 8 HOH HOH . 
V 7 HOH D 6 306 74 HOH HOH . 
V 7 HOH D 7 307 29 HOH HOH . 
V 7 HOH D 8 308 19 HOH HOH . 
V 7 HOH D 9 309 122 HOH HOH . 
V 7 HOH D 10 310 101 HOH HOH . 
V 7 HOH D 11 311 130 HOH HOH . 
V 7 HOH D 12 312 25 HOH HOH . 
V 7 HOH D 13 313 133 HOH HOH . 
V 7 HOH D 14 314 38 HOH HOH . 
V 7 HOH D 15 315 127 HOH HOH . 
V 7 HOH D 16 316 131 HOH HOH . 
V 7 HOH D 17 317 162 HOH HOH . 
V 7 HOH D 18 318 21 HOH HOH . 
W 7 HOH E 1 201 112 HOH HOH . 
W 7 HOH E 2 202 66 HOH HOH . 
W 7 HOH E 3 203 117 HOH HOH . 
W 7 HOH E 4 204 50 HOH HOH . 
W 7 HOH E 5 205 32 HOH HOH . 
W 7 HOH E 6 206 110 HOH HOH . 
W 7 HOH E 7 207 24 HOH HOH . 
W 7 HOH E 8 208 7 HOH HOH . 
W 7 HOH E 9 209 142 HOH HOH . 
X 7 HOH F 1 301 124 HOH HOH . 
X 7 HOH F 2 302 3 HOH HOH . 
X 7 HOH F 3 303 165 HOH HOH . 
X 7 HOH F 4 304 161 HOH HOH . 
X 7 HOH F 5 305 126 HOH HOH . 
X 7 HOH F 6 306 125 HOH HOH . 
X 7 HOH F 7 307 160 HOH HOH . 
Y 7 HOH G 1 301 147 HOH HOH . 
Y 7 HOH G 2 302 27 HOH HOH . 
Y 7 HOH G 3 303 75 HOH HOH . 
Z 7 HOH H 1 301 139 HOH HOH . 
Z 7 HOH H 2 302 57 HOH HOH . 
Z 7 HOH H 3 303 5 HOH HOH . 
Z 7 HOH H 4 304 150 HOH HOH . 
Z 7 HOH H 5 305 105 HOH HOH . 
Z 7 HOH H 6 306 151 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . L 4 2.367 26.993 60.956 1 112.99 ? S SO4 201 C 1 
HETATM 2 O O1 SO4 . . . L 4 3.201 25.864 61.281 1 110.49 ? O1 SO4 201 C 1 
HETATM 3 O O2 SO4 . . . L 4 2.284 27.114 59.527 1 108.27 ? O2 SO4 201 C 1 
HETATM 4 O O3 SO4 . . . L 4 2.939 28.193 61.509 1 114.41 ? O3 SO4 201 C 1 
HETATM 5 O O4 SO4 . . . L 4 1.048 26.798 61.503 1 113.8 ? O4 SO4 201 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           1065 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#