data_6NYT # _model_server_result.job_id 2JKVePP5-MR4keMeuTDvzw _model_server_result.datetime_utc '2025-03-26 17:01:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 6NYT # _exptl.entry_id 6NYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NYT _cell.length_a 56.943 _cell.length_b 56.943 _cell.length_c 89.983 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 32 A LYS 704 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc2 A OD1 ASP 33 A ASP 705 1_555 B CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc3 A OD2 ASP 33 A ASP 705 1_555 B CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc4 A OD1 ASP 33 A ASP 705 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc5 A OD2 ASP 39 A ASP 711 1_555 B CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc6 A OD1 ASP 85 A ASP 757 1_555 B CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc7 A OD2 ASP 85 A ASP 757 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc8 A O GLU 86 A GLU 758 1_555 B CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc9 A OD1 ASP 87 A ASP 759 1_555 B CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc10 A OD1 ASP 87 A ASP 759 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc11 A OD2 ASP 87 A ASP 759 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc12 A OD2 ASP 104 A ASP 776 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc13 B CA CA . A CA 901 1_555 G O HOH . A HOH 1114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc14 C CA CA . A CA 902 1_555 G O HOH . A HOH 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6NYT _atom_sites.fract_transf_matrix[1][1] 0.017561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 901 901 CA CA . C 2 CA A 1 902 902 CA CA . D 3 CL A 1 903 911 CL CL . E 3 CL A 1 904 912 CL CL . F 4 GOL A 1 905 921 GOL GOL . G 5 HOH A 1 1001 120 HOH HOH . G 5 HOH A 2 1002 79 HOH HOH . G 5 HOH A 3 1003 81 HOH HOH . G 5 HOH A 4 1004 52 HOH HOH . G 5 HOH A 5 1005 56 HOH HOH . G 5 HOH A 6 1006 76 HOH HOH . G 5 HOH A 7 1007 97 HOH HOH . G 5 HOH A 8 1008 84 HOH HOH . G 5 HOH A 9 1009 35 HOH HOH . G 5 HOH A 10 1010 136 HOH HOH . G 5 HOH A 11 1011 7 HOH HOH . G 5 HOH A 12 1012 98 HOH HOH . G 5 HOH A 13 1013 144 HOH HOH . G 5 HOH A 14 1014 90 HOH HOH . G 5 HOH A 15 1015 12 HOH HOH . G 5 HOH A 16 1016 88 HOH HOH . G 5 HOH A 17 1017 109 HOH HOH . G 5 HOH A 18 1018 2 HOH HOH . G 5 HOH A 19 1019 51 HOH HOH . G 5 HOH A 20 1020 110 HOH HOH . G 5 HOH A 21 1021 141 HOH HOH . G 5 HOH A 22 1022 116 HOH HOH . G 5 HOH A 23 1023 87 HOH HOH . G 5 HOH A 24 1024 53 HOH HOH . G 5 HOH A 25 1025 131 HOH HOH . G 5 HOH A 26 1026 123 HOH HOH . G 5 HOH A 27 1027 11 HOH HOH . G 5 HOH A 28 1028 18 HOH HOH . G 5 HOH A 29 1029 117 HOH HOH . G 5 HOH A 30 1030 44 HOH HOH . G 5 HOH A 31 1031 127 HOH HOH . G 5 HOH A 32 1032 10 HOH HOH . G 5 HOH A 33 1033 1 HOH HOH . G 5 HOH A 34 1034 43 HOH HOH . G 5 HOH A 35 1035 58 HOH HOH . G 5 HOH A 36 1036 30 HOH HOH . G 5 HOH A 37 1037 19 HOH HOH . G 5 HOH A 38 1038 38 HOH HOH . G 5 HOH A 39 1039 64 HOH HOH . G 5 HOH A 40 1040 48 HOH HOH . G 5 HOH A 41 1041 62 HOH HOH . G 5 HOH A 42 1042 32 HOH HOH . G 5 HOH A 43 1043 96 HOH HOH . G 5 HOH A 44 1044 9 HOH HOH . G 5 HOH A 45 1045 47 HOH HOH . G 5 HOH A 46 1046 23 HOH HOH . G 5 HOH A 47 1047 34 HOH HOH . G 5 HOH A 48 1048 126 HOH HOH . G 5 HOH A 49 1049 29 HOH HOH . G 5 HOH A 50 1050 137 HOH HOH . G 5 HOH A 51 1051 102 HOH HOH . G 5 HOH A 52 1052 41 HOH HOH . G 5 HOH A 53 1053 36 HOH HOH . G 5 HOH A 54 1054 83 HOH HOH . G 5 HOH A 55 1055 66 HOH HOH . G 5 HOH A 56 1056 71 HOH HOH . G 5 HOH A 57 1057 114 HOH HOH . G 5 HOH A 58 1058 139 HOH HOH . G 5 HOH A 59 1059 115 HOH HOH . G 5 HOH A 60 1060 118 HOH HOH . G 5 HOH A 61 1061 133 HOH HOH . G 5 HOH A 62 1062 16 HOH HOH . G 5 HOH A 63 1063 101 HOH HOH . G 5 HOH A 64 1064 37 HOH HOH . G 5 HOH A 65 1065 73 HOH HOH . G 5 HOH A 66 1066 42 HOH HOH . G 5 HOH A 67 1067 17 HOH HOH . G 5 HOH A 68 1068 55 HOH HOH . G 5 HOH A 69 1069 67 HOH HOH . G 5 HOH A 70 1070 20 HOH HOH . G 5 HOH A 71 1071 59 HOH HOH . G 5 HOH A 72 1072 61 HOH HOH . G 5 HOH A 73 1073 125 HOH HOH . G 5 HOH A 74 1074 119 HOH HOH . G 5 HOH A 75 1075 39 HOH HOH . G 5 HOH A 76 1076 33 HOH HOH . G 5 HOH A 77 1077 6 HOH HOH . G 5 HOH A 78 1078 3 HOH HOH . G 5 HOH A 79 1079 31 HOH HOH . G 5 HOH A 80 1080 21 HOH HOH . G 5 HOH A 81 1081 14 HOH HOH . G 5 HOH A 82 1082 50 HOH HOH . G 5 HOH A 83 1083 13 HOH HOH . G 5 HOH A 84 1084 46 HOH HOH . G 5 HOH A 85 1085 27 HOH HOH . G 5 HOH A 86 1086 40 HOH HOH . G 5 HOH A 87 1087 70 HOH HOH . G 5 HOH A 88 1088 28 HOH HOH . G 5 HOH A 89 1089 107 HOH HOH . G 5 HOH A 90 1090 26 HOH HOH . G 5 HOH A 91 1091 104 HOH HOH . G 5 HOH A 92 1092 80 HOH HOH . G 5 HOH A 93 1093 49 HOH HOH . G 5 HOH A 94 1094 94 HOH HOH . G 5 HOH A 95 1095 145 HOH HOH . G 5 HOH A 96 1096 22 HOH HOH . G 5 HOH A 97 1097 69 HOH HOH . G 5 HOH A 98 1098 140 HOH HOH . G 5 HOH A 99 1099 91 HOH HOH . G 5 HOH A 100 1100 113 HOH HOH . G 5 HOH A 101 1101 143 HOH HOH . G 5 HOH A 102 1102 128 HOH HOH . G 5 HOH A 103 1103 112 HOH HOH . G 5 HOH A 104 1104 8 HOH HOH . G 5 HOH A 105 1105 106 HOH HOH . G 5 HOH A 106 1106 77 HOH HOH . G 5 HOH A 107 1107 124 HOH HOH . G 5 HOH A 108 1108 92 HOH HOH . G 5 HOH A 109 1109 60 HOH HOH . G 5 HOH A 110 1110 24 HOH HOH . G 5 HOH A 111 1111 82 HOH HOH . G 5 HOH A 112 1112 130 HOH HOH . G 5 HOH A 113 1113 138 HOH HOH . G 5 HOH A 114 1114 4 HOH HOH . G 5 HOH A 115 1115 111 HOH HOH . G 5 HOH A 116 1116 5 HOH HOH . G 5 HOH A 117 1117 129 HOH HOH . G 5 HOH A 118 1118 25 HOH HOH . G 5 HOH A 119 1119 74 HOH HOH . G 5 HOH A 120 1120 135 HOH HOH . G 5 HOH A 121 1121 89 HOH HOH . G 5 HOH A 122 1122 99 HOH HOH . G 5 HOH A 123 1123 134 HOH HOH . G 5 HOH A 124 1124 132 HOH HOH . G 5 HOH A 125 1125 78 HOH HOH . G 5 HOH A 126 1126 122 HOH HOH . G 5 HOH A 127 1127 146 HOH HOH . G 5 HOH A 128 1128 63 HOH HOH . G 5 HOH A 129 1129 105 HOH HOH . G 5 HOH A 130 1130 15 HOH HOH . G 5 HOH A 131 1131 57 HOH HOH . G 5 HOH A 132 1132 142 HOH HOH . G 5 HOH A 133 1133 100 HOH HOH . G 5 HOH A 134 1134 93 HOH HOH . G 5 HOH A 135 1135 68 HOH HOH . G 5 HOH A 136 1136 108 HOH HOH . G 5 HOH A 137 1137 95 HOH HOH . G 5 HOH A 138 1138 75 HOH HOH . G 5 HOH A 139 1139 65 HOH HOH . G 5 HOH A 140 1140 54 HOH HOH . G 5 HOH A 141 1141 72 HOH HOH . G 5 HOH A 142 1142 45 HOH HOH . G 5 HOH A 143 1143 86 HOH HOH . G 5 HOH A 144 1144 85 HOH HOH . G 5 HOH A 145 1145 103 HOH HOH . G 5 HOH A 146 1146 121 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.553 _atom_site.Cartn_y 31.483 _atom_site.Cartn_z 35.268 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 8.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 901 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #