data_6NYV
#
_model_server_result.job_id            O5KABdADs0GrgBnVejCAbQ 
_model_server_result.datetime_utc      '2024-10-18 17:29:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nyv 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":803}' 
#
_entry.id    6NYV 
#
_exptl.entry_id    6NYV 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6NYV 
_cell.length_a            79.158 
_cell.length_b            79.158 
_cell.length_c            97.076 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6NYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 294 n n 
C1 H11 MPD sing 295 n n 
C1 H12 MPD sing 296 n n 
C1 H13 MPD sing 297 n n 
C2 O2 MPD sing 298 n n 
C2 CM MPD sing 299 n n 
C2 C3 MPD sing 300 n n 
O2 HO2 MPD sing 301 n n 
CM HM1 MPD sing 302 n n 
CM HM2 MPD sing 303 n n 
CM HM3 MPD sing 304 n n 
C3 C4 MPD sing 305 n n 
C3 H31 MPD sing 306 n n 
C3 H32 MPD sing 307 n n 
C4 O4 MPD sing 308 n n 
C4 C5 MPD sing 309 n n 
C4 H4 MPD sing 310 n n 
O4 HO4 MPD sing 311 n n 
C5 H51 MPD sing 312 n n 
C5 H52 MPD sing 313 n n 
C5 H53 MPD sing 314 n n 
#
_atom_sites.entry_id                     6NYV 
_atom_sites.fract_transf_matrix[1][1]    0.012633 
_atom_sites.fract_transf_matrix[1][2]    0.007294 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014587 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010301 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 B 1 801 2 SO4 SO4 . 
C 3 LBD B 1 802 1 LBD LBD . 
D 4 MPD B 1 803 1 MPD MPD . 
E 5 HOH B 1 901 49 HOH HOH . 
E 5 HOH B 2 902 45 HOH HOH . 
E 5 HOH B 3 903 2 HOH HOH . 
E 5 HOH B 4 904 15 HOH HOH . 
E 5 HOH B 5 905 12 HOH HOH . 
E 5 HOH B 6 906 42 HOH HOH . 
E 5 HOH B 7 907 47 HOH HOH . 
E 5 HOH B 8 908 1 HOH HOH . 
E 5 HOH B 9 909 52 HOH HOH . 
E 5 HOH B 10 910 8 HOH HOH . 
E 5 HOH B 11 911 16 HOH HOH . 
E 5 HOH B 12 912 18 HOH HOH . 
E 5 HOH B 13 913 7 HOH HOH . 
E 5 HOH B 14 914 29 HOH HOH . 
E 5 HOH B 15 915 6 HOH HOH . 
E 5 HOH B 16 916 5 HOH HOH . 
E 5 HOH B 17 917 9 HOH HOH . 
E 5 HOH B 18 918 53 HOH HOH . 
E 5 HOH B 19 919 54 HOH HOH . 
E 5 HOH B 20 920 62 HOH HOH . 
E 5 HOH B 21 921 10 HOH HOH . 
E 5 HOH B 22 922 17 HOH HOH . 
E 5 HOH B 23 923 3 HOH HOH . 
E 5 HOH B 24 924 40 HOH HOH . 
E 5 HOH B 25 925 32 HOH HOH . 
E 5 HOH B 26 926 4 HOH HOH . 
E 5 HOH B 27 927 28 HOH HOH . 
E 5 HOH B 28 928 36 HOH HOH . 
E 5 HOH B 29 929 61 HOH HOH . 
E 5 HOH B 30 930 58 HOH HOH . 
E 5 HOH B 31 931 11 HOH HOH . 
E 5 HOH B 32 932 37 HOH HOH . 
E 5 HOH B 33 933 41 HOH HOH . 
E 5 HOH B 34 934 65 HOH HOH . 
E 5 HOH B 35 935 24 HOH HOH . 
E 5 HOH B 36 936 48 HOH HOH . 
E 5 HOH B 37 937 44 HOH HOH . 
E 5 HOH B 38 938 67 HOH HOH . 
E 5 HOH B 39 939 57 HOH HOH . 
E 5 HOH B 40 940 34 HOH HOH . 
E 5 HOH B 41 941 35 HOH HOH . 
E 5 HOH B 42 942 66 HOH HOH . 
E 5 HOH B 43 943 56 HOH HOH . 
E 5 HOH B 44 944 30 HOH HOH . 
E 5 HOH B 45 945 55 HOH HOH . 
E 5 HOH B 46 946 63 HOH HOH . 
E 5 HOH B 47 947 50 HOH HOH . 
E 5 HOH B 48 948 14 HOH HOH . 
E 5 HOH B 49 949 38 HOH HOH . 
E 5 HOH B 50 950 22 HOH HOH . 
E 5 HOH B 51 951 60 HOH HOH . 
E 5 HOH B 52 952 39 HOH HOH . 
E 5 HOH B 53 953 59 HOH HOH . 
E 5 HOH B 54 954 51 HOH HOH . 
E 5 HOH B 55 955 23 HOH HOH . 
E 5 HOH B 56 956 64 HOH HOH . 
E 5 HOH B 57 957 27 HOH HOH . 
E 5 HOH B 58 958 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 4 56.032 76.092 4.629 1 83.87 ? C1 MPD 803 B 1 
HETATM 2 C C2 MPD . . . D 4 56.901 76.853 5.63 1 91.79 ? C2 MPD 803 B 1 
HETATM 3 O O2 MPD . . . D 4 56.079 77.667 6.506 1 94.01 ? O2 MPD 803 B 1 
HETATM 4 C CM MPD . . . D 4 57.58 75.838 6.541 1 80.26 ? CM MPD 803 B 1 
HETATM 5 C C3 MPD . . . D 4 58 77.66 4.927 1 83.93 ? C3 MPD 803 B 1 
HETATM 6 C C4 MPD . . . D 4 57.735 79.056 4.344 1 87.78 ? C4 MPD 803 B 1 
HETATM 7 O O4 MPD . . . D 4 58.33 79.092 3.064 1 82.14 ? O4 MPD 803 B 1 
HETATM 8 C C5 MPD . . . D 4 56.281 79.49 4.184 1 83.39 ? C5 MPD 803 B 1 
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_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
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