data_6NYW
#
_model_server_result.job_id            9Us2E8WGcSMRlLuhrDRsbw 
_model_server_result.datetime_utc      '2024-10-18 17:17:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nyw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":804}' 
#
_entry.id    6NYW 
#
_exptl.entry_id    6NYW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6NYW 
_cell.length_a            78.543 
_cell.length_b            78.543 
_cell.length_c            96.476 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NYW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 300 n n 
C1 H11 MPD sing 301 n n 
C1 H12 MPD sing 302 n n 
C1 H13 MPD sing 303 n n 
C2 O2 MPD sing 304 n n 
C2 CM MPD sing 305 n n 
C2 C3 MPD sing 306 n n 
O2 HO2 MPD sing 307 n n 
CM HM1 MPD sing 308 n n 
CM HM2 MPD sing 309 n n 
CM HM3 MPD sing 310 n n 
C3 C4 MPD sing 311 n n 
C3 H31 MPD sing 312 n n 
C3 H32 MPD sing 313 n n 
C4 O4 MPD sing 314 n n 
C4 C5 MPD sing 315 n n 
C4 H4 MPD sing 316 n n 
O4 HO4 MPD sing 317 n n 
C5 H51 MPD sing 318 n n 
C5 H52 MPD sing 319 n n 
C5 H53 MPD sing 320 n n 
#
_atom_sites.entry_id                     6NYW 
_atom_sites.fract_transf_matrix[1][1]    0.012732 
_atom_sites.fract_transf_matrix[1][2]    0.007351 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014702 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010365 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 B 1 801 2 SO4 SO4 . 
C 3 L8M B 1 802 1 L8M L8M . 
D 4 MPD B 1 803 3 MPD MPD . 
E 4 MPD B 1 804 4 MPD MPD . 
F 5 ACT B 1 805 1 ACT ACT . 
G 5 ACT B 1 806 2 ACT ACT . 
H 6 HOH B 1 901 21 HOH HOH . 
H 6 HOH B 2 902 105 HOH HOH . 
H 6 HOH B 3 903 91 HOH HOH . 
H 6 HOH B 4 904 96 HOH HOH . 
H 6 HOH B 5 905 102 HOH HOH . 
H 6 HOH B 6 906 37 HOH HOH . 
H 6 HOH B 7 907 3 HOH HOH . 
H 6 HOH B 8 908 59 HOH HOH . 
H 6 HOH B 9 909 61 HOH HOH . 
H 6 HOH B 10 910 84 HOH HOH . 
H 6 HOH B 11 911 86 HOH HOH . 
H 6 HOH B 12 912 31 HOH HOH . 
H 6 HOH B 13 913 103 HOH HOH . 
H 6 HOH B 14 914 49 HOH HOH . 
H 6 HOH B 15 915 10 HOH HOH . 
H 6 HOH B 16 916 29 HOH HOH . 
H 6 HOH B 17 917 27 HOH HOH . 
H 6 HOH B 18 918 12 HOH HOH . 
H 6 HOH B 19 919 57 HOH HOH . 
H 6 HOH B 20 920 1 HOH HOH . 
H 6 HOH B 21 921 32 HOH HOH . 
H 6 HOH B 22 922 28 HOH HOH . 
H 6 HOH B 23 923 9 HOH HOH . 
H 6 HOH B 24 924 119 HOH HOH . 
H 6 HOH B 25 925 24 HOH HOH . 
H 6 HOH B 26 926 7 HOH HOH . 
H 6 HOH B 27 927 50 HOH HOH . 
H 6 HOH B 28 928 56 HOH HOH . 
H 6 HOH B 29 929 17 HOH HOH . 
H 6 HOH B 30 930 93 HOH HOH . 
H 6 HOH B 31 931 30 HOH HOH . 
H 6 HOH B 32 932 4 HOH HOH . 
H 6 HOH B 33 933 19 HOH HOH . 
H 6 HOH B 34 934 6 HOH HOH . 
H 6 HOH B 35 935 16 HOH HOH . 
H 6 HOH B 36 936 108 HOH HOH . 
H 6 HOH B 37 937 89 HOH HOH . 
H 6 HOH B 38 938 2 HOH HOH . 
H 6 HOH B 39 939 18 HOH HOH . 
H 6 HOH B 40 940 5 HOH HOH . 
H 6 HOH B 41 941 121 HOH HOH . 
H 6 HOH B 42 942 51 HOH HOH . 
H 6 HOH B 43 943 82 HOH HOH . 
H 6 HOH B 44 944 20 HOH HOH . 
H 6 HOH B 45 945 35 HOH HOH . 
H 6 HOH B 46 946 13 HOH HOH . 
H 6 HOH B 47 947 33 HOH HOH . 
H 6 HOH B 48 948 22 HOH HOH . 
H 6 HOH B 49 949 71 HOH HOH . 
H 6 HOH B 50 950 98 HOH HOH . 
H 6 HOH B 51 951 15 HOH HOH . 
H 6 HOH B 52 952 48 HOH HOH . 
H 6 HOH B 53 953 26 HOH HOH . 
H 6 HOH B 54 954 58 HOH HOH . 
H 6 HOH B 55 955 23 HOH HOH . 
H 6 HOH B 56 956 111 HOH HOH . 
H 6 HOH B 57 957 118 HOH HOH . 
H 6 HOH B 58 958 78 HOH HOH . 
H 6 HOH B 59 959 8 HOH HOH . 
H 6 HOH B 60 960 14 HOH HOH . 
H 6 HOH B 61 961 40 HOH HOH . 
H 6 HOH B 62 962 47 HOH HOH . 
H 6 HOH B 63 963 54 HOH HOH . 
H 6 HOH B 64 964 124 HOH HOH . 
H 6 HOH B 65 965 94 HOH HOH . 
H 6 HOH B 66 966 125 HOH HOH . 
H 6 HOH B 67 967 126 HOH HOH . 
H 6 HOH B 68 968 64 HOH HOH . 
H 6 HOH B 69 969 46 HOH HOH . 
H 6 HOH B 70 970 72 HOH HOH . 
H 6 HOH B 71 971 39 HOH HOH . 
H 6 HOH B 72 972 107 HOH HOH . 
H 6 HOH B 73 973 123 HOH HOH . 
H 6 HOH B 74 974 81 HOH HOH . 
H 6 HOH B 75 975 69 HOH HOH . 
H 6 HOH B 76 976 120 HOH HOH . 
H 6 HOH B 77 977 63 HOH HOH . 
H 6 HOH B 78 978 90 HOH HOH . 
H 6 HOH B 79 979 43 HOH HOH . 
H 6 HOH B 80 980 97 HOH HOH . 
H 6 HOH B 81 981 74 HOH HOH . 
H 6 HOH B 82 982 110 HOH HOH . 
H 6 HOH B 83 983 117 HOH HOH . 
H 6 HOH B 84 984 88 HOH HOH . 
H 6 HOH B 85 985 101 HOH HOH . 
H 6 HOH B 86 986 38 HOH HOH . 
H 6 HOH B 87 987 104 HOH HOH . 
H 6 HOH B 88 988 87 HOH HOH . 
H 6 HOH B 89 989 92 HOH HOH . 
H 6 HOH B 90 990 85 HOH HOH . 
H 6 HOH B 91 991 106 HOH HOH . 
H 6 HOH B 92 992 122 HOH HOH . 
H 6 HOH B 93 993 113 HOH HOH . 
H 6 HOH B 94 994 112 HOH HOH . 
H 6 HOH B 95 995 66 HOH HOH . 
H 6 HOH B 96 996 114 HOH HOH . 
H 6 HOH B 97 997 116 HOH HOH . 
H 6 HOH B 98 998 100 HOH HOH . 
H 6 HOH B 99 999 42 HOH HOH . 
H 6 HOH B 100 1000 95 HOH HOH . 
H 6 HOH B 101 1001 25 HOH HOH . 
H 6 HOH B 102 1002 80 HOH HOH . 
H 6 HOH B 103 1003 44 HOH HOH . 
H 6 HOH B 104 1004 73 HOH HOH . 
H 6 HOH B 105 1005 77 HOH HOH . 
H 6 HOH B 106 1006 109 HOH HOH . 
H 6 HOH B 107 1007 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . E 4 56.377 77.995 5.597 1 65.91 ? C1 MPD 804 B 1 
HETATM 2 C C2 MPD . . . E 4 55.622 77.428 6.789 1 62.99 ? C2 MPD 804 B 1 
HETATM 3 O O2 MPD . . . E 4 55.098 78.536 7.565 1 72.66 ? O2 MPD 804 B 1 
HETATM 4 C CM MPD . . . E 4 54.454 76.579 6.306 1 68.33 ? CM MPD 804 B 1 
HETATM 5 C C3 MPD . . . E 4 56.573 76.626 7.674 1 65.45 ? C3 MPD 804 B 1 
HETATM 6 C C4 MPD . . . E 4 56.641 75.16 7.267 1 59.92 ? C4 MPD 804 B 1 
HETATM 7 O O4 MPD . . . E 4 57.527 75.014 6.18 1 76.14 ? O4 MPD 804 B 1 
HETATM 8 C C5 MPD . . . E 4 57.129 74.31 8.43 1 63.18 ? C5 MPD 804 B 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#