data_6NYY
#
_model_server_result.job_id            sLC0_CayPuuaUwjN_O7N7A 
_model_server_result.datetime_utc      '2025-07-07 22:43:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nyy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":801}' 
#
_entry.id    6NYY 
#
_exptl.entry_id    6NYY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NYY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NYY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 L N N 
? 4 Q N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 306 A HIS 574 1_555 K ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc2 A OD2 ASP 381 A ASP 649 1_555 K ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc3 B OG1 THR 87 B THR 355 1_555 M MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc4 B NE2 HIS 306 B HIS 574 1_555 N ZN ZN . B ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc5 B NE2 HIS 310 B HIS 578 1_555 N ZN ZN . B ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc6 B OD2 ASP 381 B ASP 649 1_555 N ZN ZN . B ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc7 L O1G ANP . B ANP 801 1_555 M MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc8 L O3G ANP . B ANP 801 1_555 M MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc9 L O1B ANP . B ANP 801 1_555 M MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc10 C OG1 THR 87 C THR 355 1_555 O MG MG . C MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc11 C NE2 HIS 306 C HIS 574 1_555 P ZN ZN . C ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc12 C NE2 HIS 310 C HIS 578 1_555 P ZN ZN . C ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc13 C OD2 ASP 381 C ASP 649 1_555 P ZN ZN . C ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc14 O MG MG . C MG 801 1_555 Q O1B ANP . C ANP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc15 O MG MG . C MG 801 1_555 Q O3G ANP . C ANP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc16 P ZN ZN . C ZN 802 1_555 I O ALA 5 I ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc17 D OG1 THR 87 D THR 355 1_555 S MG MG . D MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc18 D NE2 HIS 306 D HIS 574 1_555 T ZN ZN . D ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc19 D NE2 HIS 310 D HIS 578 1_555 T ZN ZN . D ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc20 D OD2 ASP 381 D ASP 649 1_555 T ZN ZN . D ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc21 R O3G ANP . D ANP 801 1_555 S MG MG . D MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc22 T ZN ZN . D ZN 803 1_555 J O ALA 5 J ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc23 E NE2 HIS 306 E HIS 574 1_555 V ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc24 E OD2 ASP 381 E ASP 649 1_555 V ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc25 F NE2 HIS 306 F HIS 574 1_555 W ZN ZN . F ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc26 F NE2 HIS 310 F HIS 578 1_555 W ZN ZN . F ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc27 F OD2 ASP 381 F ASP 649 1_555 W ZN ZN . F ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 57 n n 
PG O2G ANP sing 58 n n 
PG O3G ANP sing 59 n n 
PG N3B ANP sing 60 n n 
O2G HOG2 ANP sing 61 n n 
O3G HOG3 ANP sing 62 n n 
PB O1B ANP doub 63 n n 
PB O2B ANP sing 64 n n 
PB N3B ANP sing 65 n n 
PB O3A ANP sing 66 n n 
O2B HOB2 ANP sing 67 n n 
N3B HNB1 ANP sing 68 n n 
PA O1A ANP doub 69 n n 
PA O2A ANP sing 70 n n 
PA O3A ANP sing 71 n n 
PA O5' ANP sing 72 n n 
O2A HOA2 ANP sing 73 n n 
O5' C5' ANP sing 74 n n 
C5' C4' ANP sing 75 n n 
C5' "H5'1" ANP sing 76 n n 
C5' "H5'2" ANP sing 77 n n 
C4' O4' ANP sing 78 n n 
C4' C3' ANP sing 79 n n 
C4' H4' ANP sing 80 n n 
O4' C1' ANP sing 81 n n 
C3' O3' ANP sing 82 n n 
C3' C2' ANP sing 83 n n 
C3' H3' ANP sing 84 n n 
O3' HO3' ANP sing 85 n n 
C2' O2' ANP sing 86 n n 
C2' C1' ANP sing 87 n n 
C2' H2' ANP sing 88 n n 
O2' HO2' ANP sing 89 n n 
C1' N9 ANP sing 90 n n 
C1' H1' ANP sing 91 n n 
N9 C8 ANP sing 92 n y 
N9 C4 ANP sing 93 n y 
C8 N7 ANP doub 94 n y 
C8 H8 ANP sing 95 n n 
N7 C5 ANP sing 96 n y 
C5 C6 ANP sing 97 n y 
C5 C4 ANP doub 98 n y 
C6 N6 ANP sing 99 n n 
C6 N1 ANP doub 100 n y 
N6 HN61 ANP sing 101 n n 
N6 HN62 ANP sing 102 n n 
N1 C2 ANP sing 103 n y 
C2 N3 ANP doub 104 n y 
C2 H2 ANP sing 105 n n 
N3 C4 ANP sing 106 n y 
#
_atom_sites.entry_id                     6NYY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 3 ZN A 1 801 1 ZN ZN . 
L 4 ANP B 1 801 1 ANP ANP . 
M 5 MG B 1 802 3 MG MG . 
N 3 ZN B 1 803 2 ZN ZN . 
O 5 MG C 1 801 1 MG MG . 
P 3 ZN C 1 802 3 ZN ZN . 
Q 4 ANP C 1 803 2 ANP ANP . 
R 4 ANP D 1 801 3 ANP ANP . 
S 5 MG D 1 802 2 MG MG . 
T 3 ZN D 1 803 4 ZN ZN . 
U 6 ADP E 1 801 4 ADP ADP . 
V 3 ZN E 1 802 5 ZN ZN . 
W 3 ZN F 1 801 6 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . L 4 42.657 70.043 85.694 1 74.15 ? PG ANP 801 B 1 
HETATM 2 O O1G ANP . . . L 4 42.54 70.897 86.909 1 74.15 ? O1G ANP 801 B 1 
HETATM 3 O O2G ANP . . . L 4 44.014 70.33 84.956 1 74.15 ? O2G ANP 801 B 1 
HETATM 4 O O3G ANP . . . L 4 42.615 68.532 86.132 1 74.15 ? O3G ANP 801 B 1 
HETATM 5 P PB ANP . . . L 4 40.09 69.404 85.028 1 74.15 ? PB ANP 801 B 1 
HETATM 6 O O1B ANP . . . L 4 40.36 68.737 86.327 1 74.15 ? O1B ANP 801 B 1 
HETATM 7 O O2B ANP . . . L 4 39.852 68.374 83.893 1 74.15 ? O2B ANP 801 B 1 
HETATM 8 N N3B ANP . . . L 4 41.388 70.374 84.64 1 74.15 ? N3B ANP 801 B 1 
HETATM 9 P PA ANP . . . L 4 38.003 70.142 86.517 1 74.15 ? PA ANP 801 B 1 
HETATM 10 O O1A ANP . . . L 4 38.749 70.649 87.684 1 74.15 ? O1A ANP 801 B 1 
HETATM 11 O O2A ANP . . . L 4 37.61 68.673 86.647 1 74.15 ? O2A ANP 801 B 1 
HETATM 12 O O3A ANP . . . L 4 38.814 70.265 85.176 1 74.15 ? O3A ANP 801 B 1 
HETATM 13 O O5' ANP . . . L 4 36.765 71.078 86.33 1 74.15 ? O5' ANP 801 B 1 
HETATM 14 C C5' ANP . . . L 4 36.575 72.099 87.308 1 74.15 ? C5' ANP 801 B 1 
HETATM 15 C C4' ANP . . . L 4 35.308 72.842 86.995 1 74.15 ? C4' ANP 801 B 1 
HETATM 16 O O4' ANP . . . L 4 34.992 72.695 85.596 1 74.15 ? O4' ANP 801 B 1 
HETATM 17 C C3' ANP . . . L 4 34.08 72.331 87.732 1 74.15 ? C3' ANP 801 B 1 
HETATM 18 O O3' ANP . . . L 4 33.965 72.941 89.012 1 74.15 ? O3' ANP 801 B 1 
HETATM 19 C C2' ANP . . . L 4 32.949 72.757 86.804 1 74.15 ? C2' ANP 801 B 1 
HETATM 20 O O2' ANP . . . L 4 32.59 74.114 87.025 1 74.15 ? O2' ANP 801 B 1 
HETATM 21 C C1' ANP . . . L 4 33.59 72.6 85.422 1 74.15 ? C1' ANP 801 B 1 
HETATM 22 N N9 ANP . . . L 4 33.306 71.331 84.763 1 74.15 ? N9 ANP 801 B 1 
HETATM 23 C C8 ANP . . . L 4 34.229 70.413 84.342 1 74.15 ? C8 ANP 801 B 1 
HETATM 24 N N7 ANP . . . L 4 33.705 69.35 83.781 1 74.15 ? N7 ANP 801 B 1 
HETATM 25 C C5 ANP . . . L 4 32.343 69.587 83.836 1 74.15 ? C5 ANP 801 B 1 
HETATM 26 C C6 ANP . . . L 4 31.233 68.841 83.403 1 74.15 ? C6 ANP 801 B 1 
HETATM 27 N N6 ANP . . . L 4 31.327 67.652 82.805 1 74.15 ? N6 ANP 801 B 1 
HETATM 28 N N1 ANP . . . L 4 30.005 69.365 83.607 1 74.15 ? N1 ANP 801 B 1 
HETATM 29 C C2 ANP . . . L 4 29.904 70.55 84.21 1 74.15 ? C2 ANP 801 B 1 
HETATM 30 N N3 ANP . . . L 4 30.877 71.347 84.652 1 74.15 ? N3 ANP 801 B 1 
HETATM 31 C C4 ANP . . . L 4 32.081 70.808 84.431 1 74.15 ? C4 ANP 801 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#