data_6NZQ
#
_model_server_result.job_id            -xdFw6oI0uHaKGL4gZOQ7Q 
_model_server_result.datetime_utc      '2025-01-11 20:01:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nzq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":4000}' 
#
_entry.id    6NZQ 
#
_exptl.entry_id    6NZQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              515.539 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-[(5-fluoro-4-methylpyridin-2-yl)amino]-4-[(2-methoxy-3-{[(pyridin-2-yl)methyl]carbamoyl}phenyl)amino]-N-methylpyridine-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.73 
_cell.angle_gamma         90 
_cell.entry_id            6NZQ 
_cell.length_a            71.01 
_cell.length_b            67.45 
_cell.length_c            75.12 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NZQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,C,E 2 1 
B,D,F 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C27 H26 F N7 O3' 
_chem_comp.formula_weight    515.539 
_chem_comp.id                LB4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-[(5-fluoro-4-methylpyridin-2-yl)amino]-4-[(2-methoxy-3-{[(pyridin-2-yl)methyl]carbamoyl}phenyl)amino]-N-methylpyridine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C4 LB4 doub 173 n y 
C6 C5 LB4 sing 174 n y 
C4 C2 LB4 sing 175 n y 
C5 N1 LB4 doub 176 n y 
C2 C1 LB4 doub 177 n y 
N1 C1 LB4 sing 178 n y 
C1 C3 LB4 sing 179 n n 
O3 C27 LB4 doub 180 n n 
C3 N2 LB4 sing 181 n n 
C27 N2 LB4 sing 182 n n 
C27 C24 LB4 sing 183 n n 
C26 O2 LB4 sing 184 n n 
C24 C23 LB4 doub 185 n y 
C24 C25 LB4 sing 186 n y 
C23 C22 LB4 sing 187 n y 
O2 C25 LB4 sing 188 n n 
C25 C20 LB4 doub 189 n y 
C22 C21 LB4 doub 190 n y 
C20 C21 LB4 sing 191 n y 
C20 N7 LB4 sing 192 n n 
O1 C18 LB4 doub 193 n n 
N7 C11 LB4 sing 194 n n 
C11 C10 LB4 doub 195 n y 
C11 C7 LB4 sing 196 n y 
C18 C7 LB4 sing 197 n n 
C18 N6 LB4 sing 198 n n 
C16 N5 LB4 doub 199 n y 
C16 C15 LB4 sing 200 n y 
F1 C15 LB4 sing 201 n n 
C10 C9 LB4 sing 202 n y 
C7 C8 LB4 doub 203 n y 
N5 C12 LB4 sing 204 n y 
C15 C14 LB4 doub 205 n y 
N6 C19 LB4 sing 206 n n 
C9 N4 LB4 sing 207 n n 
C9 N3 LB4 doub 208 n y 
C14 C17 LB4 sing 209 n n 
C14 C13 LB4 sing 210 n y 
C12 N4 LB4 sing 211 n n 
C12 C13 LB4 doub 212 n y 
C8 N3 LB4 sing 213 n y 
C13 H11 LB4 sing 214 n n 
C17 H13 LB4 sing 215 n n 
C17 H15 LB4 sing 216 n n 
C17 H14 LB4 sing 217 n n 
C16 H12 LB4 sing 218 n n 
C19 H17 LB4 sing 219 n n 
C19 H18 LB4 sing 220 n n 
C19 H19 LB4 sing 221 n n 
C21 H21 LB4 sing 222 n n 
C22 H22 LB4 sing 223 n n 
C23 H23 LB4 sing 224 n n 
C2 H1 LB4 sing 225 n n 
C3 H3 LB4 sing 226 n n 
C3 H2 LB4 sing 227 n n 
C4 H4 LB4 sing 228 n n 
C5 H5 LB4 sing 229 n n 
N2 H6 LB4 sing 230 n n 
C6 H7 LB4 sing 231 n n 
C8 H8 LB4 sing 232 n n 
C10 H9 LB4 sing 233 n n 
N4 H10 LB4 sing 234 n n 
N6 H16 LB4 sing 235 n n 
N7 H20 LB4 sing 236 n n 
C26 H24 LB4 sing 237 n n 
C26 H25 LB4 sing 238 n n 
C26 H26 LB4 sing 239 n n 
#
_atom_sites.entry_id                     6NZQ 
_atom_sites.fract_transf_matrix[1][1]    0.014083 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0059 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014826 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014433 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LB4 A 1 4000 4000 LB4 LG1 . 
D 2 LB4 B 1 4000 4000 LB4 LG1 . 
E 3 HOH A 1 4101 62 HOH HOH . 
E 3 HOH A 2 4102 42 HOH HOH . 
E 3 HOH A 3 4103 49 HOH HOH . 
E 3 HOH A 4 4104 47 HOH HOH . 
E 3 HOH A 5 4105 78 HOH HOH . 
E 3 HOH A 6 4106 70 HOH HOH . 
E 3 HOH A 7 4107 61 HOH HOH . 
E 3 HOH A 8 4108 73 HOH HOH . 
E 3 HOH A 9 4109 59 HOH HOH . 
E 3 HOH A 10 4110 18 HOH HOH . 
E 3 HOH A 11 4111 1 HOH HOH . 
E 3 HOH A 12 4112 35 HOH HOH . 
E 3 HOH A 13 4113 79 HOH HOH . 
E 3 HOH A 14 4114 75 HOH HOH . 
E 3 HOH A 15 4115 60 HOH HOH . 
E 3 HOH A 16 4116 38 HOH HOH . 
E 3 HOH A 17 4117 40 HOH HOH . 
E 3 HOH A 18 4118 37 HOH HOH . 
E 3 HOH A 19 4119 65 HOH HOH . 
E 3 HOH A 20 4120 19 HOH HOH . 
E 3 HOH A 21 4121 26 HOH HOH . 
E 3 HOH A 22 4122 83 HOH HOH . 
E 3 HOH A 23 4123 28 HOH HOH . 
E 3 HOH A 24 4124 81 HOH HOH . 
E 3 HOH A 25 4125 55 HOH HOH . 
E 3 HOH A 26 4126 76 HOH HOH . 
E 3 HOH A 27 4127 57 HOH HOH . 
E 3 HOH A 28 4128 71 HOH HOH . 
E 3 HOH A 29 4129 45 HOH HOH . 
E 3 HOH A 30 4130 74 HOH HOH . 
E 3 HOH A 31 4131 34 HOH HOH . 
E 3 HOH A 32 4132 13 HOH HOH . 
E 3 HOH A 33 4133 41 HOH HOH . 
E 3 HOH A 34 4134 6 HOH HOH . 
E 3 HOH A 35 4135 39 HOH HOH . 
E 3 HOH A 36 4136 10 HOH HOH . 
E 3 HOH A 37 4137 5 HOH HOH . 
E 3 HOH A 38 4138 14 HOH HOH . 
E 3 HOH A 39 4139 9 HOH HOH . 
E 3 HOH A 40 4140 12 HOH HOH . 
E 3 HOH A 41 4141 51 HOH HOH . 
F 3 HOH B 1 4101 27 HOH HOH . 
F 3 HOH B 2 4102 33 HOH HOH . 
F 3 HOH B 3 4103 54 HOH HOH . 
F 3 HOH B 4 4104 53 HOH HOH . 
F 3 HOH B 5 4105 17 HOH HOH . 
F 3 HOH B 6 4106 31 HOH HOH . 
F 3 HOH B 7 4107 23 HOH HOH . 
F 3 HOH B 8 4108 80 HOH HOH . 
F 3 HOH B 9 4109 32 HOH HOH . 
F 3 HOH B 10 4110 67 HOH HOH . 
F 3 HOH B 11 4111 52 HOH HOH . 
F 3 HOH B 12 4112 63 HOH HOH . 
F 3 HOH B 13 4113 58 HOH HOH . 
F 3 HOH B 14 4114 2 HOH HOH . 
F 3 HOH B 15 4115 25 HOH HOH . 
F 3 HOH B 16 4116 68 HOH HOH . 
F 3 HOH B 17 4117 56 HOH HOH . 
F 3 HOH B 18 4118 43 HOH HOH . 
F 3 HOH B 19 4119 48 HOH HOH . 
F 3 HOH B 20 4120 69 HOH HOH . 
F 3 HOH B 21 4121 66 HOH HOH . 
F 3 HOH B 22 4122 30 HOH HOH . 
F 3 HOH B 23 4123 72 HOH HOH . 
F 3 HOH B 24 4124 64 HOH HOH . 
F 3 HOH B 25 4125 84 HOH HOH . 
F 3 HOH B 26 4126 82 HOH HOH . 
F 3 HOH B 27 4127 8 HOH HOH . 
F 3 HOH B 28 4128 15 HOH HOH . 
F 3 HOH B 29 4129 50 HOH HOH . 
F 3 HOH B 30 4130 77 HOH HOH . 
F 3 HOH B 31 4131 7 HOH HOH . 
F 3 HOH B 32 4132 36 HOH HOH . 
F 3 HOH B 33 4133 3 HOH HOH . 
F 3 HOH B 34 4134 22 HOH HOH . 
F 3 HOH B 35 4135 29 HOH HOH . 
F 3 HOH B 36 4136 46 HOH HOH . 
F 3 HOH B 37 4137 11 HOH HOH . 
F 3 HOH B 38 4138 20 HOH HOH . 
F 3 HOH B 39 4139 24 HOH HOH . 
F 3 HOH B 40 4140 44 HOH HOH . 
F 3 HOH B 41 4141 16 HOH HOH . 
F 3 HOH B 42 4142 4 HOH HOH . 
F 3 HOH B 43 4143 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 LB4 . . . D 2 -5.246 1.779 34.098 1 41.45 ? C13 LB4 4000 B 1 
HETATM 2 C C18 LB4 . . . D 2 -12.944 2.976 35.94 1 39.1 ? C18 LB4 4000 B 1 
HETATM 3 C C17 LB4 . . . D 2 -2.819 1.205 33.841 1 41.41 ? C17 LB4 4000 B 1 
HETATM 4 C C16 LB4 . . . D 2 -5.738 -0.429 35.646 1 41.39 ? C16 LB4 4000 B 1 
HETATM 5 C C15 LB4 . . . D 2 -4.453 -0.219 35.144 1 43.83 ? C15 LB4 4000 B 1 
HETATM 6 C C19 LB4 . . . D 2 -14.888 4.424 35.731 1 41.4 ? C19 LB4 4000 B 1 
HETATM 7 C C20 LB4 . . . D 2 -10.899 -0.518 37.503 1 41.69 ? C20 LB4 4000 B 1 
HETATM 8 C C21 LB4 . . . D 2 -9.771 -1.217 37.071 1 41.39 ? C21 LB4 4000 B 1 
HETATM 9 C C22 LB4 . . . D 2 -9.371 -2.36 37.735 1 41.4 ? C22 LB4 4000 B 1 
HETATM 10 C C23 LB4 . . . D 2 -10.121 -2.87 38.774 1 41.36 ? C23 LB4 4000 B 1 
HETATM 11 C C24 LB4 . . . D 2 -11.281 -2.222 39.199 1 40.71 ? C24 LB4 4000 B 1 
HETATM 12 C C11 LB4 . . . D 2 -10.74 1.706 36.171 1 40.24 ? C11 LB4 4000 B 1 
HETATM 13 C C12 LB4 . . . D 2 -6.493 1.52 34.668 1 41.61 ? C12 LB4 4000 B 1 
HETATM 14 C C27 LB4 . . . D 2 -12.067 -2.924 40.263 1 39.49 ? C27 LB4 4000 B 1 
HETATM 15 C C1 LB4 . . . D 2 -14.233 -3.073 42.617 1 43.51 ? C1 LB4 4000 B 1 
HETATM 16 C C2 LB4 . . . D 2 -13.694 -3.926 43.578 1 41.44 ? C2 LB4 4000 B 1 
HETATM 17 N N1 LB4 . . . D 2 -14.74 -1.864 42.925 1 43.86 ? N1 LB4 4000 B 1 
HETATM 18 C C3 LB4 . . . D 2 -14.266 -3.454 41.157 1 41.41 ? C3 LB4 4000 B 1 
HETATM 19 C C4 LB4 . . . D 2 -13.674 -3.508 44.899 1 41.4 ? C4 LB4 4000 B 1 
HETATM 20 C C5 LB4 . . . D 2 -14.7 -1.484 44.214 1 41.47 ? C5 LB4 4000 B 1 
HETATM 21 N N2 LB4 . . . D 2 -13.371 -2.662 40.333 1 41.32 ? N2 LB4 4000 B 1 
HETATM 22 C C6 LB4 . . . D 2 -14.179 -2.268 45.23 1 41.46 ? C6 LB4 4000 B 1 
HETATM 23 C C7 LB4 . . . D 2 -11.476 2.795 35.64 1 39.98 ? C7 LB4 4000 B 1 
HETATM 24 C C8 LB4 . . . D 2 -10.764 3.691 34.838 1 41.34 ? C8 LB4 4000 B 1 
HETATM 25 N N3 LB4 . . . D 2 -9.485 3.548 34.476 1 36.72 ? N3 LB4 4000 B 1 
HETATM 26 C C9 LB4 . . . D 2 -8.806 2.535 34.988 1 37.48 ? C9 LB4 4000 B 1 
HETATM 27 C C10 LB4 . . . D 2 -9.376 1.637 35.886 1 41.32 ? C10 LB4 4000 B 1 
HETATM 28 N N4 LB4 . . . D 2 -7.504 2.462 34.51 1 41.4 ? N4 LB4 4000 B 1 
HETATM 29 C C14 LB4 . . . D 2 -4.199 0.901 34.36 1 43.19 ? C14 LB4 4000 B 1 
HETATM 30 N N5 LB4 . . . D 2 -6.742 0.424 35.416 1 42.34 ? N5 LB4 4000 B 1 
HETATM 31 F F1 LB4 . . . D 2 -3.475 -1.102 35.413 1 47.39 ? F1 LB4 4000 B 1 
HETATM 32 N N6 LB4 . . . D 2 -13.592 3.942 35.292 1 41.32 ? N6 LB4 4000 B 1 
HETATM 33 O O1 LB4 . . . D 2 -13.515 2.262 36.761 1 38.44 ? O1 LB4 4000 B 1 
HETATM 34 N N7 LB4 . . . D 2 -11.398 0.653 36.874 1 41.45 ? N7 LB4 4000 B 1 
HETATM 35 C C25 LB4 . . . D 2 -11.648 -1.021 38.574 1 41.75 ? C25 LB4 4000 B 1 
HETATM 36 O O2 LB4 . . . D 2 -12.747 -0.291 38.983 1 40.65 ? O2 LB4 4000 B 1 
HETATM 37 C C26 LB4 . . . D 2 -12.469 0.844 39.806 1 41.4 ? C26 LB4 4000 B 1 
HETATM 38 O O3 LB4 . . . D 2 -11.523 -3.716 41.027 1 39.93 ? O3 LB4 4000 B 1 
HETATM 39 H H11 LB4 . . . D 2 -5.064 2.639 33.456 0 41.41 ? H11 LB4 4000 B 1 
HETATM 40 H H13 LB4 . . . D 2 -2.342 0.299 33.467 0 41.41 ? H13 LB4 4000 B 1 
HETATM 41 H H15 LB4 . . . D 2 -2.832 1.925 33.024 0 41.41 ? H15 LB4 4000 B 1 
HETATM 42 H H14 LB4 . . . D 2 -2.174 1.617 34.615 0 41.41 ? H14 LB4 4000 B 1 
HETATM 43 H H12 LB4 . . . D 2 -5.993 -1.296 36.254 0 41.41 ? H12 LB4 4000 B 1 
HETATM 44 H H17 LB4 . . . D 2 -14.837 4.831 36.739 0 41.41 ? H17 LB4 4000 B 1 
HETATM 45 H H18 LB4 . . . D 2 -15.658 3.655 35.73 0 41.41 ? H18 LB4 4000 B 1 
HETATM 46 H H19 LB4 . . . D 2 -15.244 5.223 35.083 0 41.41 ? H19 LB4 4000 B 1 
HETATM 47 H H21 LB4 . . . D 2 -9.254 -0.954 36.15 0 41.41 ? H21 LB4 4000 B 1 
HETATM 48 H H22 LB4 . . . D 2 -8.443 -2.851 37.447 0 41.41 ? H22 LB4 4000 B 1 
HETATM 49 H H23 LB4 . . . D 2 -9.798 -3.793 39.253 0 41.41 ? H23 LB4 4000 B 1 
HETATM 50 H H1 LB4 . . . D 2 -13.294 -4.899 43.299 0 41.41 ? H1 LB4 4000 B 1 
HETATM 51 H H3 LB4 . . . D 2 -15.283 -3.335 40.785 0 41.41 ? H3 LB4 4000 B 1 
HETATM 52 H H2 LB4 . . . D 2 -14.039 -4.512 41.049 0 41.41 ? H2 LB4 4000 B 1 
HETATM 53 H H4 LB4 . . . D 2 -13.261 -4.155 45.672 0 41.41 ? H4 LB4 4000 B 1 
HETATM 54 H H5 LB4 . . . D 2 -15.12 -0.499 44.407 0 41.41 ? H5 LB4 4000 B 1 
HETATM 55 H H6 LB4 . . . D 2 -13.807 -1.9 39.825 0 41.41 ? H6 LB4 4000 B 1 
HETATM 56 H H7 LB4 . . . D 2 -14.173 -1.916 46.261 0 41.41 ? H7 LB4 4000 B 1 
HETATM 57 H H8 LB4 . . . D 2 -11.161 4.657 34.535 0 41.41 ? H8 LB4 4000 B 1 
HETATM 58 H H9 LB4 . . . D 2 -8.729 1.014 36.497 0 41.41 ? H9 LB4 4000 B 1 
HETATM 59 H H10 LB4 . . . D 2 -7.235 3.252 33.932 0 41.41 ? H10 LB4 4000 B 1 
HETATM 60 H H16 LB4 . . . D 2 -13.26 4.339 34.419 0 41.41 ? H16 LB4 4000 B 1 
HETATM 61 H H20 LB4 . . . D 2 -12.409 0.71 36.935 0 41.41 ? H20 LB4 4000 B 1 
HETATM 62 H H24 LB4 . . . D 2 -13.001 1.656 39.314 0 41.41 ? H24 LB4 4000 B 1 
HETATM 63 H H25 LB4 . . . D 2 -11.408 1.082 39.862 0 41.41 ? H25 LB4 4000 B 1 
HETATM 64 H H26 LB4 . . . D 2 -12.861 0.718 40.814 0 41.41 ? H26 LB4 4000 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           64 
#