data_6O07 # _model_server_result.job_id tCitwUN0h2h-N0eeRtHlfQ _model_server_result.datetime_utc '2024-10-19 14:27:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":917}' # _entry.id 6O07 # _exptl.entry_id 6O07 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O07 _cell.length_a 84.437 _cell.length_b 125.726 _cell.length_c 145.924 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 W N N ? 7 X N N ? 7 Y N N ? 7 IA N N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 428 n n C1 C3 MLI sing 429 n n C1 H11 MLI sing 430 n n C1 H12 MLI sing 431 n n C2 O6 MLI doub 432 n n C2 O7 MLI sing 433 n n C3 O8 MLI doub 434 n n C3 O9 MLI sing 435 n n # _atom_sites.entry_id 6O07 _atom_sites.fract_transf_matrix[1][1] 0.011843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CL C 1 201 214 CL CL . E 5 GOL C 1 202 11 GOL GOL . F 6 ACO C 1 203 202 ACO ACO . G 4 CL A 1 901 202 CL CL . H 4 CL A 1 902 203 CL CL . I 4 CL A 1 903 207 CL CL . J 4 CL A 1 904 209 CL CL . K 4 CL A 1 905 210 CL CL . L 4 CL A 1 906 211 CL CL . M 4 CL A 1 907 212 CL CL . N 4 CL A 1 908 218 CL CL . O 4 CL A 1 909 220 CL CL . P 4 CL A 1 910 221 CL CL . Q 4 CL A 1 911 223 CL CL . R 5 GOL A 1 912 1 GOL GOL . S 5 GOL A 1 913 2 GOL GOL . T 5 GOL A 1 914 3 GOL GOL . U 5 GOL A 1 915 8 GOL GOL . V 5 GOL A 1 916 9 GOL GOL . W 7 MLI A 1 917 14 MLI MLI . X 7 MLI A 1 918 20 MLI MLI . Y 7 MLI A 1 919 23 MLI MLI . Z 8 IHP A 1 920 901 IHP I6P . AA 4 CL B 1 301 201 CL CL . BA 4 CL B 1 302 205 CL CL . CA 4 CL B 1 303 206 CL CL . DA 4 CL B 1 304 208 CL CL . EA 4 CL B 1 305 215 CL CL . FA 4 CL B 1 306 222 CL CL . GA 5 GOL B 1 307 5 GOL GOL . HA 5 GOL B 1 308 6 GOL GOL . IA 7 MLI B 1 309 16 MLI MLI . JA 9 EPE B 1 310 37 EPE EPE . KA 10 HOH C 1 301 851 HOH HOH . KA 10 HOH C 2 302 728 HOH HOH . KA 10 HOH C 3 303 797 HOH HOH . KA 10 HOH C 4 304 850 HOH HOH . KA 10 HOH C 5 305 868 HOH HOH . KA 10 HOH C 6 306 847 HOH HOH . KA 10 HOH C 7 307 878 HOH HOH . KA 10 HOH C 8 308 845 HOH HOH . KA 10 HOH C 9 309 470 HOH HOH . KA 10 HOH C 10 310 833 HOH HOH . KA 10 HOH C 11 311 844 HOH HOH . KA 10 HOH C 12 312 852 HOH HOH . LA 10 HOH A 1 1001 879 HOH HOH . LA 10 HOH A 2 1002 357 HOH HOH . LA 10 HOH A 3 1003 295 HOH HOH . LA 10 HOH A 4 1004 813 HOH HOH . LA 10 HOH A 5 1005 521 HOH HOH . LA 10 HOH A 6 1006 687 HOH HOH . LA 10 HOH A 7 1007 338 HOH HOH . LA 10 HOH A 8 1008 865 HOH HOH . LA 10 HOH A 9 1009 187 HOH HOH . LA 10 HOH A 10 1010 175 HOH HOH . LA 10 HOH A 11 1011 141 HOH HOH . LA 10 HOH A 12 1012 404 HOH HOH . LA 10 HOH A 13 1013 817 HOH HOH . LA 10 HOH A 14 1014 647 HOH HOH . LA 10 HOH A 15 1015 519 HOH HOH . LA 10 HOH A 16 1016 875 HOH HOH . LA 10 HOH A 17 1017 777 HOH HOH . LA 10 HOH A 18 1018 206 HOH HOH . LA 10 HOH A 19 1019 271 HOH HOH . LA 10 HOH A 20 1020 139 HOH HOH . LA 10 HOH A 21 1021 824 HOH HOH . LA 10 HOH A 22 1022 137 HOH HOH . LA 10 HOH A 23 1023 12 HOH HOH . LA 10 HOH A 24 1024 525 HOH HOH . LA 10 HOH A 25 1025 161 HOH HOH . LA 10 HOH A 26 1026 821 HOH HOH . LA 10 HOH A 27 1027 540 HOH HOH . LA 10 HOH A 28 1028 760 HOH HOH . LA 10 HOH A 29 1029 583 HOH HOH . LA 10 HOH A 30 1030 316 HOH HOH . LA 10 HOH A 31 1031 183 HOH HOH . LA 10 HOH A 32 1032 778 HOH HOH . LA 10 HOH A 33 1033 715 HOH HOH . LA 10 HOH A 34 1034 754 HOH HOH . LA 10 HOH A 35 1035 550 HOH HOH . LA 10 HOH A 36 1036 366 HOH HOH . LA 10 HOH A 37 1037 91 HOH HOH . LA 10 HOH A 38 1038 153 HOH HOH . LA 10 HOH A 39 1039 374 HOH HOH . LA 10 HOH A 40 1040 29 HOH HOH . LA 10 HOH A 41 1041 318 HOH HOH . LA 10 HOH A 42 1042 783 HOH HOH . LA 10 HOH A 43 1043 604 HOH HOH . LA 10 HOH A 44 1044 874 HOH HOH . LA 10 HOH A 45 1045 188 HOH HOH . LA 10 HOH A 46 1046 815 HOH HOH . LA 10 HOH A 47 1047 115 HOH HOH . LA 10 HOH A 48 1048 587 HOH HOH . LA 10 HOH A 49 1049 78 HOH HOH . LA 10 HOH A 50 1050 117 HOH HOH . LA 10 HOH A 51 1051 535 HOH HOH . LA 10 HOH A 52 1052 85 HOH HOH . LA 10 HOH A 53 1053 162 HOH HOH . LA 10 HOH A 54 1054 313 HOH HOH . LA 10 HOH A 55 1055 877 HOH HOH . LA 10 HOH A 56 1056 181 HOH HOH . LA 10 HOH A 57 1057 138 HOH HOH . LA 10 HOH A 58 1058 469 HOH HOH . LA 10 HOH A 59 1059 866 HOH HOH . LA 10 HOH A 60 1060 820 HOH HOH . LA 10 HOH A 61 1061 400 HOH HOH . LA 10 HOH A 62 1062 522 HOH HOH . LA 10 HOH A 63 1063 92 HOH HOH . LA 10 HOH A 64 1064 285 HOH HOH . LA 10 HOH A 65 1065 838 HOH HOH . LA 10 HOH A 66 1066 132 HOH HOH . LA 10 HOH A 67 1067 212 HOH HOH . LA 10 HOH A 68 1068 742 HOH HOH . LA 10 HOH A 69 1069 302 HOH HOH . LA 10 HOH A 70 1070 205 HOH HOH . LA 10 HOH A 71 1071 185 HOH HOH . LA 10 HOH A 72 1072 594 HOH HOH . LA 10 HOH A 73 1073 59 HOH HOH . LA 10 HOH A 74 1074 301 HOH HOH . LA 10 HOH A 75 1075 160 HOH HOH . LA 10 HOH A 76 1076 199 HOH HOH . LA 10 HOH A 77 1077 816 HOH HOH . LA 10 HOH A 78 1078 62 HOH HOH . LA 10 HOH A 79 1079 429 HOH HOH . LA 10 HOH A 80 1080 286 HOH HOH . LA 10 HOH A 81 1081 759 HOH HOH . LA 10 HOH A 82 1082 76 HOH HOH . LA 10 HOH A 83 1083 420 HOH HOH . LA 10 HOH A 84 1084 770 HOH HOH . LA 10 HOH A 85 1085 365 HOH HOH . LA 10 HOH A 86 1086 100 HOH HOH . LA 10 HOH A 87 1087 296 HOH HOH . LA 10 HOH A 88 1088 297 HOH HOH . LA 10 HOH A 89 1089 140 HOH HOH . LA 10 HOH A 90 1090 764 HOH HOH . LA 10 HOH A 91 1091 619 HOH HOH . LA 10 HOH A 92 1092 536 HOH HOH . LA 10 HOH A 93 1093 193 HOH HOH . LA 10 HOH A 94 1094 588 HOH HOH . LA 10 HOH A 95 1095 201 HOH HOH . LA 10 HOH A 96 1096 290 HOH HOH . LA 10 HOH A 97 1097 156 HOH HOH . LA 10 HOH A 98 1098 527 HOH HOH . LA 10 HOH A 99 1099 63 HOH HOH . LA 10 HOH A 100 1100 382 HOH HOH . LA 10 HOH A 101 1101 528 HOH HOH . LA 10 HOH A 102 1102 324 HOH HOH . LA 10 HOH A 103 1103 718 HOH HOH . LA 10 HOH A 104 1104 255 HOH HOH . LA 10 HOH A 105 1105 148 HOH HOH . LA 10 HOH A 106 1106 325 HOH HOH . LA 10 HOH A 107 1107 827 HOH HOH . LA 10 HOH A 108 1108 717 HOH HOH . LA 10 HOH A 109 1109 299 HOH HOH . LA 10 HOH A 110 1110 157 HOH HOH . LA 10 HOH A 111 1111 379 HOH HOH . LA 10 HOH A 112 1112 630 HOH HOH . LA 10 HOH A 113 1113 544 HOH HOH . LA 10 HOH A 114 1114 121 HOH HOH . LA 10 HOH A 115 1115 780 HOH HOH . LA 10 HOH A 116 1116 124 HOH HOH . LA 10 HOH A 117 1117 28 HOH HOH . LA 10 HOH A 118 1118 451 HOH HOH . LA 10 HOH A 119 1119 418 HOH HOH . LA 10 HOH A 120 1120 876 HOH HOH . LA 10 HOH A 121 1121 407 HOH HOH . LA 10 HOH A 122 1122 486 HOH HOH . LA 10 HOH A 123 1123 449 HOH HOH . LA 10 HOH A 124 1124 439 HOH HOH . LA 10 HOH A 125 1125 641 HOH HOH . LA 10 HOH A 126 1126 440 HOH HOH . LA 10 HOH A 127 1127 371 HOH HOH . LA 10 HOH A 128 1128 437 HOH HOH . LA 10 HOH A 129 1129 233 HOH HOH . LA 10 HOH A 130 1130 841 HOH HOH . LA 10 HOH A 131 1131 496 HOH HOH . LA 10 HOH A 132 1132 512 HOH HOH . MA 10 HOH B 1 401 54 HOH HOH . MA 10 HOH B 2 402 699 HOH HOH . MA 10 HOH B 3 403 2 HOH HOH . MA 10 HOH B 4 404 789 HOH HOH . MA 10 HOH B 5 405 16 HOH HOH . MA 10 HOH B 6 406 693 HOH HOH . MA 10 HOH B 7 407 34 HOH HOH . MA 10 HOH B 8 408 4 HOH HOH . MA 10 HOH B 9 409 801 HOH HOH . MA 10 HOH B 10 410 711 HOH HOH . MA 10 HOH B 11 411 756 HOH HOH . MA 10 HOH B 12 412 808 HOH HOH . MA 10 HOH B 13 413 389 HOH HOH . MA 10 HOH B 14 414 11 HOH HOH . MA 10 HOH B 15 415 621 HOH HOH . MA 10 HOH B 16 416 7 HOH HOH . MA 10 HOH B 17 417 197 HOH HOH . MA 10 HOH B 18 418 109 HOH HOH . MA 10 HOH B 19 419 629 HOH HOH . MA 10 HOH B 20 420 107 HOH HOH . MA 10 HOH B 21 421 873 HOH HOH . MA 10 HOH B 22 422 831 HOH HOH . MA 10 HOH B 23 423 769 HOH HOH . MA 10 HOH B 24 424 618 HOH HOH . MA 10 HOH B 25 425 533 HOH HOH . MA 10 HOH B 26 426 730 HOH HOH . MA 10 HOH B 27 427 10 HOH HOH . MA 10 HOH B 28 428 52 HOH HOH . MA 10 HOH B 29 429 867 HOH HOH . MA 10 HOH B 30 430 31 HOH HOH . MA 10 HOH B 31 431 625 HOH HOH . MA 10 HOH B 32 432 77 HOH HOH . MA 10 HOH B 33 433 27 HOH HOH . MA 10 HOH B 34 434 64 HOH HOH . MA 10 HOH B 35 435 497 HOH HOH . MA 10 HOH B 36 436 698 HOH HOH . MA 10 HOH B 37 437 737 HOH HOH . MA 10 HOH B 38 438 690 HOH HOH . MA 10 HOH B 39 439 110 HOH HOH . MA 10 HOH B 40 440 102 HOH HOH . MA 10 HOH B 41 441 862 HOH HOH . MA 10 HOH B 42 442 443 HOH HOH . MA 10 HOH B 43 443 22 HOH HOH . MA 10 HOH B 44 444 617 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . W 7 -50.909 10.242 56.33 1 70.17 ? C1 MLI 917 A 1 HETATM 2 C C2 MLI . . . W 7 -51.65 10.037 57.65 1 73.06 ? C2 MLI 917 A 1 HETATM 3 C C3 MLI . . . W 7 -50.02 11.482 56.406 1 72.06 ? C3 MLI 917 A 1 HETATM 4 O O6 MLI . . . W 7 -52.908 10.108 57.684 1 65.56 ? O6 MLI 917 A 1 HETATM 5 O O7 MLI . . . W 7 -51.002 9.79 58.701 1 79.8 ? O7 MLI 917 A 1 HETATM 6 O O8 MLI . . . W 7 -48.936 11.515 55.765 1 68.23 ? O8 MLI 917 A 1 HETATM 7 O O9 MLI . . . W 7 -50.369 12.471 57.105 1 74.66 ? O9 MLI 917 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #