data_6O08 # _model_server_result.job_id 70JMcYMS8jwXClU5FTbZfw _model_server_result.datetime_utc '2025-03-06 00:21:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":411}' # _entry.id 6O08 # _exptl.entry_id 6O08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O08 _cell.length_a 44.695 _cell.length_b 49.469 _cell.length_c 156.223 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 343 A TYR 343 1_555 L NA NA . A NA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? metalc ? metalc2 G OXT ACT . A ACT 406 1_555 L NA NA . A NA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6O08 _atom_sites.fract_transf_matrix[1][1] 0.022374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 401 FMN FMN . C 3 SO4 A 1 402 501 SO4 SO4 . D 3 SO4 A 1 403 1 SO4 SO4 . E 3 SO4 A 1 404 2 SO4 SO4 . F 3 SO4 A 1 405 4 SO4 SO4 . G 4 ACT A 1 406 3 ACT ACT . H 4 ACT A 1 407 4 ACT ACT . I 4 ACT A 1 408 5 ACT ACT . J 4 ACT A 1 409 6 ACT ACT . K 4 ACT A 1 410 7 ACT ACT . L 5 NA A 1 411 1 NA NA . M 6 CL A 1 412 1 CL CL . N 6 CL A 1 413 2 CL CL . O 7 HOH A 1 501 50 HOH HOH . O 7 HOH A 2 502 156 HOH HOH . O 7 HOH A 3 503 24 HOH HOH . O 7 HOH A 4 504 116 HOH HOH . O 7 HOH A 5 505 237 HOH HOH . O 7 HOH A 6 506 170 HOH HOH . O 7 HOH A 7 507 120 HOH HOH . O 7 HOH A 8 508 56 HOH HOH . O 7 HOH A 9 509 93 HOH HOH . O 7 HOH A 10 510 188 HOH HOH . O 7 HOH A 11 511 124 HOH HOH . O 7 HOH A 12 512 97 HOH HOH . O 7 HOH A 13 513 61 HOH HOH . O 7 HOH A 14 514 6 HOH HOH . O 7 HOH A 15 515 30 HOH HOH . O 7 HOH A 16 516 115 HOH HOH . O 7 HOH A 17 517 74 HOH HOH . O 7 HOH A 18 518 242 HOH HOH . O 7 HOH A 19 519 48 HOH HOH . O 7 HOH A 20 520 79 HOH HOH . O 7 HOH A 21 521 154 HOH HOH . O 7 HOH A 22 522 5 HOH HOH . O 7 HOH A 23 523 39 HOH HOH . O 7 HOH A 24 524 13 HOH HOH . O 7 HOH A 25 525 297 HOH HOH . O 7 HOH A 26 526 29 HOH HOH . O 7 HOH A 27 527 243 HOH HOH . O 7 HOH A 28 528 92 HOH HOH . O 7 HOH A 29 529 286 HOH HOH . O 7 HOH A 30 530 67 HOH HOH . O 7 HOH A 31 531 17 HOH HOH . O 7 HOH A 32 532 94 HOH HOH . O 7 HOH A 33 533 88 HOH HOH . O 7 HOH A 34 534 15 HOH HOH . O 7 HOH A 35 535 24 HOH HOH . O 7 HOH A 36 536 51 HOH HOH . O 7 HOH A 37 537 1 HOH HOH . O 7 HOH A 38 538 110 HOH HOH . O 7 HOH A 39 539 151 HOH HOH . O 7 HOH A 40 540 46 HOH HOH . O 7 HOH A 41 541 54 HOH HOH . O 7 HOH A 42 542 32 HOH HOH . O 7 HOH A 43 543 70 HOH HOH . O 7 HOH A 44 544 16 HOH HOH . O 7 HOH A 45 545 59 HOH HOH . O 7 HOH A 46 546 27 HOH HOH . O 7 HOH A 47 547 53 HOH HOH . O 7 HOH A 48 548 49 HOH HOH . O 7 HOH A 49 549 189 HOH HOH . O 7 HOH A 50 550 176 HOH HOH . O 7 HOH A 51 551 76 HOH HOH . O 7 HOH A 52 552 21 HOH HOH . O 7 HOH A 53 553 284 HOH HOH . O 7 HOH A 54 554 149 HOH HOH . O 7 HOH A 55 555 206 HOH HOH . O 7 HOH A 56 556 12 HOH HOH . O 7 HOH A 57 557 6 HOH HOH . O 7 HOH A 58 558 2 HOH HOH . O 7 HOH A 59 559 165 HOH HOH . O 7 HOH A 60 560 164 HOH HOH . O 7 HOH A 61 561 138 HOH HOH . O 7 HOH A 62 562 69 HOH HOH . O 7 HOH A 63 563 150 HOH HOH . O 7 HOH A 64 564 184 HOH HOH . O 7 HOH A 65 565 85 HOH HOH . O 7 HOH A 66 566 25 HOH HOH . O 7 HOH A 67 567 82 HOH HOH . O 7 HOH A 68 568 272 HOH HOH . O 7 HOH A 69 569 37 HOH HOH . O 7 HOH A 70 570 155 HOH HOH . O 7 HOH A 71 571 112 HOH HOH . O 7 HOH A 72 572 38 HOH HOH . O 7 HOH A 73 573 108 HOH HOH . O 7 HOH A 74 574 10 HOH HOH . O 7 HOH A 75 575 160 HOH HOH . O 7 HOH A 76 576 127 HOH HOH . O 7 HOH A 77 577 23 HOH HOH . O 7 HOH A 78 578 64 HOH HOH . O 7 HOH A 79 579 75 HOH HOH . O 7 HOH A 80 580 11 HOH HOH . O 7 HOH A 81 581 195 HOH HOH . O 7 HOH A 82 582 20 HOH HOH . O 7 HOH A 83 583 2 HOH HOH . O 7 HOH A 84 584 303 HOH HOH . O 7 HOH A 85 585 40 HOH HOH . O 7 HOH A 86 586 63 HOH HOH . O 7 HOH A 87 587 264 HOH HOH . O 7 HOH A 88 588 58 HOH HOH . O 7 HOH A 89 589 9 HOH HOH . O 7 HOH A 90 590 60 HOH HOH . O 7 HOH A 91 591 308 HOH HOH . O 7 HOH A 92 592 175 HOH HOH . O 7 HOH A 93 593 4 HOH HOH . O 7 HOH A 94 594 305 HOH HOH . O 7 HOH A 95 595 36 HOH HOH . O 7 HOH A 96 596 261 HOH HOH . O 7 HOH A 97 597 148 HOH HOH . O 7 HOH A 98 598 200 HOH HOH . O 7 HOH A 99 599 194 HOH HOH . O 7 HOH A 100 600 168 HOH HOH . O 7 HOH A 101 601 225 HOH HOH . O 7 HOH A 102 602 250 HOH HOH . O 7 HOH A 103 603 3 HOH HOH . O 7 HOH A 104 604 84 HOH HOH . O 7 HOH A 105 605 245 HOH HOH . O 7 HOH A 106 606 249 HOH HOH . O 7 HOH A 107 607 52 HOH HOH . O 7 HOH A 108 608 107 HOH HOH . O 7 HOH A 109 609 44 HOH HOH . O 7 HOH A 110 610 205 HOH HOH . O 7 HOH A 111 611 91 HOH HOH . O 7 HOH A 112 612 37 HOH HOH . O 7 HOH A 113 613 39 HOH HOH . O 7 HOH A 114 614 55 HOH HOH . O 7 HOH A 115 615 95 HOH HOH . O 7 HOH A 116 616 71 HOH HOH . O 7 HOH A 117 617 179 HOH HOH . O 7 HOH A 118 618 45 HOH HOH . O 7 HOH A 119 619 193 HOH HOH . O 7 HOH A 120 620 28 HOH HOH . O 7 HOH A 121 621 171 HOH HOH . O 7 HOH A 122 622 1 HOH HOH . O 7 HOH A 123 623 196 HOH HOH . O 7 HOH A 124 624 166 HOH HOH . O 7 HOH A 125 625 33 HOH HOH . O 7 HOH A 126 626 168 HOH HOH . O 7 HOH A 127 627 138 HOH HOH . O 7 HOH A 128 628 270 HOH HOH . O 7 HOH A 129 629 104 HOH HOH . O 7 HOH A 130 630 222 HOH HOH . O 7 HOH A 131 631 273 HOH HOH . O 7 HOH A 132 632 106 HOH HOH . O 7 HOH A 133 633 167 HOH HOH . O 7 HOH A 134 634 100 HOH HOH . O 7 HOH A 135 635 31 HOH HOH . O 7 HOH A 136 636 147 HOH HOH . O 7 HOH A 137 637 236 HOH HOH . O 7 HOH A 138 638 59 HOH HOH . O 7 HOH A 139 639 105 HOH HOH . O 7 HOH A 140 640 111 HOH HOH . O 7 HOH A 141 641 113 HOH HOH . O 7 HOH A 142 642 41 HOH HOH . O 7 HOH A 143 643 65 HOH HOH . O 7 HOH A 144 644 135 HOH HOH . O 7 HOH A 145 645 133 HOH HOH . O 7 HOH A 146 646 172 HOH HOH . O 7 HOH A 147 647 103 HOH HOH . O 7 HOH A 148 648 114 HOH HOH . O 7 HOH A 149 649 78 HOH HOH . O 7 HOH A 150 650 102 HOH HOH . O 7 HOH A 151 651 57 HOH HOH . O 7 HOH A 152 652 136 HOH HOH . O 7 HOH A 153 653 119 HOH HOH . O 7 HOH A 154 654 153 HOH HOH . O 7 HOH A 155 655 62 HOH HOH . O 7 HOH A 156 656 204 HOH HOH . O 7 HOH A 157 657 130 HOH HOH . O 7 HOH A 158 658 98 HOH HOH . O 7 HOH A 159 659 121 HOH HOH . O 7 HOH A 160 660 80 HOH HOH . O 7 HOH A 161 661 34 HOH HOH . O 7 HOH A 162 662 137 HOH HOH . O 7 HOH A 163 663 24 HOH HOH . O 7 HOH A 164 664 252 HOH HOH . O 7 HOH A 165 665 87 HOH HOH . O 7 HOH A 166 666 66 HOH HOH . O 7 HOH A 167 667 247 HOH HOH . O 7 HOH A 168 668 198 HOH HOH . O 7 HOH A 169 669 172 HOH HOH . O 7 HOH A 170 670 265 HOH HOH . O 7 HOH A 171 671 202 HOH HOH . O 7 HOH A 172 672 33 HOH HOH . O 7 HOH A 173 673 149 HOH HOH . O 7 HOH A 174 674 117 HOH HOH . O 7 HOH A 175 675 26 HOH HOH . O 7 HOH A 176 676 123 HOH HOH . O 7 HOH A 177 677 223 HOH HOH . O 7 HOH A 178 678 83 HOH HOH . O 7 HOH A 179 679 167 HOH HOH . O 7 HOH A 180 680 38 HOH HOH . O 7 HOH A 181 681 146 HOH HOH . O 7 HOH A 182 682 35 HOH HOH . O 7 HOH A 183 683 257 HOH HOH . O 7 HOH A 184 684 176 HOH HOH . O 7 HOH A 185 685 221 HOH HOH . O 7 HOH A 186 686 192 HOH HOH . O 7 HOH A 187 687 139 HOH HOH . O 7 HOH A 188 688 27 HOH HOH . O 7 HOH A 189 689 170 HOH HOH . O 7 HOH A 190 690 186 HOH HOH . O 7 HOH A 191 691 19 HOH HOH . O 7 HOH A 192 692 10 HOH HOH . O 7 HOH A 193 693 81 HOH HOH . O 7 HOH A 194 694 125 HOH HOH . O 7 HOH A 195 695 10 HOH HOH . O 7 HOH A 196 696 10 HOH HOH . O 7 HOH A 197 697 29 HOH HOH . O 7 HOH A 198 698 140 HOH HOH . O 7 HOH A 199 699 254 HOH HOH . O 7 HOH A 200 700 255 HOH HOH . O 7 HOH A 201 701 126 HOH HOH . O 7 HOH A 202 702 299 HOH HOH . O 7 HOH A 203 703 185 HOH HOH . O 7 HOH A 204 704 235 HOH HOH . O 7 HOH A 205 705 171 HOH HOH . O 7 HOH A 206 706 19 HOH HOH . O 7 HOH A 207 707 178 HOH HOH . O 7 HOH A 208 708 111 HOH HOH . O 7 HOH A 209 709 182 HOH HOH . O 7 HOH A 210 710 269 HOH HOH . O 7 HOH A 211 711 162 HOH HOH . O 7 HOH A 212 712 277 HOH HOH . O 7 HOH A 213 713 181 HOH HOH . O 7 HOH A 214 714 241 HOH HOH . O 7 HOH A 215 715 142 HOH HOH . O 7 HOH A 216 716 295 HOH HOH . O 7 HOH A 217 717 181 HOH HOH . O 7 HOH A 218 718 36 HOH HOH . O 7 HOH A 219 719 219 HOH HOH . O 7 HOH A 220 720 275 HOH HOH . O 7 HOH A 221 721 239 HOH HOH . O 7 HOH A 222 722 210 HOH HOH . O 7 HOH A 223 723 109 HOH HOH . O 7 HOH A 224 724 157 HOH HOH . O 7 HOH A 225 725 68 HOH HOH . O 7 HOH A 226 726 143 HOH HOH . O 7 HOH A 227 727 180 HOH HOH . O 7 HOH A 228 728 307 HOH HOH . O 7 HOH A 229 729 178 HOH HOH . O 7 HOH A 230 730 122 HOH HOH . O 7 HOH A 231 731 134 HOH HOH . O 7 HOH A 232 732 246 HOH HOH . O 7 HOH A 233 733 165 HOH HOH . O 7 HOH A 234 734 276 HOH HOH . O 7 HOH A 235 735 201 HOH HOH . O 7 HOH A 236 736 68 HOH HOH . O 7 HOH A 237 737 132 HOH HOH . O 7 HOH A 238 738 169 HOH HOH . O 7 HOH A 239 739 306 HOH HOH . O 7 HOH A 240 740 283 HOH HOH . O 7 HOH A 241 741 131 HOH HOH . O 7 HOH A 242 742 207 HOH HOH . O 7 HOH A 243 743 163 HOH HOH . O 7 HOH A 244 744 187 HOH HOH . O 7 HOH A 245 745 183 HOH HOH . O 7 HOH A 246 746 220 HOH HOH . O 7 HOH A 247 747 233 HOH HOH . O 7 HOH A 248 748 291 HOH HOH . O 7 HOH A 249 749 227 HOH HOH . O 7 HOH A 250 750 296 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 5 _atom_site.Cartn_x 5.522 _atom_site.Cartn_y -6.825 _atom_site.Cartn_z 20.931 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 411 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #