data_6O0N # _model_server_result.job_id hVePvPgvr6-FUHOd7_zzeQ _model_server_result.datetime_utc '2024-11-26 16:19:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o0n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6O0N # _exptl.entry_id 6O0N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.179 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-dihydroxy-2-naphthoic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O0N _cell.length_a 102.177 _cell.length_b 143.231 _cell.length_c 184.693 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O0N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C11 H8 O4' _chem_comp.formula_weight 204.179 _chem_comp.id DNA _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-dihydroxy-2-naphthoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1,4-dihydroxynaphthalene-2-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1A C1J DNA doub 83 n n C1J O1B DNA sing 84 n n O1B HO1B DNA sing 85 n n C1K O1C DNA sing 86 n n O1C HO1C DNA sing 87 n n O1D C1M DNA sing 88 n n O1D HO1D DNA sing 89 n n C1F C1E DNA doub 90 n y C1E C1G DNA sing 91 n y C1E H1E DNA sing 92 n n C1F C1H DNA sing 93 n y C1F H1F DNA sing 94 n n C1G C1N DNA doub 95 n y C1G H1G DNA sing 96 n n C1H C1O DNA doub 97 n y C1H H1H DNA sing 98 n n C1L C1I DNA sing 99 n y C1K C1I DNA doub 100 n y C1I H1I DNA sing 101 n n C1L C1J DNA sing 102 n n C1N C1K DNA sing 103 n y C1M C1L DNA doub 104 n y C1O C1M DNA sing 105 n y C1O C1N DNA sing 106 n y # _atom_sites.entry_id 6O0N _atom_sites.fract_transf_matrix[1][1] 0.009787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 DNA A 1 601 1 DNA DNA . F 2 DNA B 1 601 3 DNA DNA . G 2 DNA C 1 601 4 DNA DNA . H 2 DNA D 1 601 2 DNA DNA . I 3 HOH A 1 701 6 HOH HOH . I 3 HOH A 2 702 1 HOH HOH . I 3 HOH A 3 703 12 HOH HOH . I 3 HOH A 4 704 9 HOH HOH . I 3 HOH A 5 705 3 HOH HOH . I 3 HOH A 6 706 7 HOH HOH . I 3 HOH A 7 707 10 HOH HOH . I 3 HOH A 8 708 11 HOH HOH . J 3 HOH B 1 701 5 HOH HOH . J 3 HOH B 2 702 8 HOH HOH . K 3 HOH C 1 701 13 HOH HOH . K 3 HOH C 2 702 4 HOH HOH . K 3 HOH C 3 703 2 HOH HOH . L 3 HOH D 1 701 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1A DNA . . . E 2 -42.964 21.079 -36.721 1 70.32 ? O1A DNA 601 A 1 HETATM 2 O O1B DNA . . . E 2 -41.199 19.829 -36.391 1 67.08 ? O1B DNA 601 A 1 HETATM 3 O O1C DNA . . . E 2 -41.401 18.547 -31.526 1 61.64 ? O1C DNA 601 A 1 HETATM 4 O O1D DNA . . . E 2 -44.053 22.339 -34.73 1 63.48 ? O1D DNA 601 A 1 HETATM 5 C C1E DNA . . . E 2 -44.126 21.295 -29.7 1 68.4 ? C1E DNA 601 A 1 HETATM 6 C C1F DNA . . . E 2 -44.789 22.24 -30.484 1 67.65 ? C1F DNA 601 A 1 HETATM 7 C C1G DNA . . . E 2 -43.232 20.385 -30.261 1 70.45 ? C1G DNA 601 A 1 HETATM 8 C C1H DNA . . . E 2 -44.584 22.309 -31.86 1 69.56 ? C1H DNA 601 A 1 HETATM 9 C C1I DNA . . . E 2 -41.831 19.525 -33.661 1 64.72 ? C1I DNA 601 A 1 HETATM 10 C C1J DNA . . . E 2 -42.191 20.456 -35.96 1 71.64 ? C1J DNA 601 A 1 HETATM 11 C C1K DNA . . . E 2 -42.052 19.471 -32.284 1 66 ? C1K DNA 601 A 1 HETATM 12 C C1L DNA . . . E 2 -42.469 20.454 -34.485 1 66.12 ? C1L DNA 601 A 1 HETATM 13 C C1M DNA . . . E 2 -43.432 21.438 -33.922 1 64.13 ? C1M DNA 601 A 1 HETATM 14 C C1N DNA . . . E 2 -42.997 20.417 -31.63 1 75.66 ? C1N DNA 601 A 1 HETATM 15 C C1O DNA . . . E 2 -43.702 21.421 -32.462 1 72.58 ? C1O DNA 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #