data_6O0N
#
_model_server_result.job_id            SLHaHIIMO7MXjNB7QiGuiw 
_model_server_result.datetime_utc      '2024-11-13 01:35:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o0n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    6O0N 
#
_exptl.entry_id    6O0N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              204.179 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-dihydroxy-2-naphthoic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6O0N 
_cell.length_a            102.177 
_cell.length_b            143.231 
_cell.length_c            184.693 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O0N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C11 H8 O4' 
_chem_comp.formula_weight    204.179 
_chem_comp.id                DNA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-dihydroxy-2-naphthoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1,4-dihydroxynaphthalene-2-carboxylic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1A C1J DNA doub 83 n n 
C1J O1B DNA sing 84 n n 
O1B HO1B DNA sing 85 n n 
C1K O1C DNA sing 86 n n 
O1C HO1C DNA sing 87 n n 
O1D C1M DNA sing 88 n n 
O1D HO1D DNA sing 89 n n 
C1F C1E DNA doub 90 n y 
C1E C1G DNA sing 91 n y 
C1E H1E DNA sing 92 n n 
C1F C1H DNA sing 93 n y 
C1F H1F DNA sing 94 n n 
C1G C1N DNA doub 95 n y 
C1G H1G DNA sing 96 n n 
C1H C1O DNA doub 97 n y 
C1H H1H DNA sing 98 n n 
C1L C1I DNA sing 99 n y 
C1K C1I DNA doub 100 n y 
C1I H1I DNA sing 101 n n 
C1L C1J DNA sing 102 n n 
C1N C1K DNA sing 103 n y 
C1M C1L DNA doub 104 n y 
C1O C1M DNA sing 105 n y 
C1O C1N DNA sing 106 n y 
#
_atom_sites.entry_id                     6O0N 
_atom_sites.fract_transf_matrix[1][1]    0.009787 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006982 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005414 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 DNA A 1 601 1 DNA DNA . 
F 2 DNA B 1 601 3 DNA DNA . 
G 2 DNA C 1 601 4 DNA DNA . 
H 2 DNA D 1 601 2 DNA DNA . 
I 3 HOH A 1 701 6 HOH HOH . 
I 3 HOH A 2 702 1 HOH HOH . 
I 3 HOH A 3 703 12 HOH HOH . 
I 3 HOH A 4 704 9 HOH HOH . 
I 3 HOH A 5 705 3 HOH HOH . 
I 3 HOH A 6 706 7 HOH HOH . 
I 3 HOH A 7 707 10 HOH HOH . 
I 3 HOH A 8 708 11 HOH HOH . 
J 3 HOH B 1 701 5 HOH HOH . 
J 3 HOH B 2 702 8 HOH HOH . 
K 3 HOH C 1 701 13 HOH HOH . 
K 3 HOH C 2 702 4 HOH HOH . 
K 3 HOH C 3 703 2 HOH HOH . 
L 3 HOH D 1 701 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1A DNA . . . F 2 -57.753 3.784 7.209 1 72.93 ? O1A DNA 601 B 1 
HETATM 2 O O1B DNA . . . F 2 -55.772 4.353 7.93 1 78.6 ? O1B DNA 601 B 1 
HETATM 3 O O1C DNA . . . F 2 -57.286 5.165 2.296 1 69.6 ? O1C DNA 601 B 1 
HETATM 4 O O1D DNA . . . F 2 -55.44 7.063 7.265 1 81.64 ? O1D DNA 601 B 1 
HETATM 5 C C1E DNA . . . F 2 -55.453 9.029 2.51 1 83.72 ? C1E DNA 601 B 1 
HETATM 6 C C1F DNA . . . F 2 -54.992 9.509 3.736 1 83.19 ? C1F DNA 601 B 1 
HETATM 7 C C1G DNA . . . F 2 -56.054 7.778 2.401 1 82.69 ? C1G DNA 601 B 1 
HETATM 8 C C1H DNA . . . F 2 -55.113 8.757 4.901 1 77.72 ? C1H DNA 601 B 1 
HETATM 9 C C1I DNA . . . F 2 -56.962 4.878 4.64 1 77.59 ? C1I DNA 601 B 1 
HETATM 10 C C1J DNA . . . F 2 -56.693 4.432 7.089 1 72.77 ? C1J DNA 601 B 1 
HETATM 11 C C1K DNA . . . F 2 -56.831 5.647 3.484 1 77.24 ? C1K DNA 601 B 1 
HETATM 12 C C1L DNA . . . F 2 -56.514 5.314 5.888 1 76.17 ? C1L DNA 601 B 1 
HETATM 13 C C1M DNA . . . F 2 -55.873 6.646 6.043 1 80.49 ? C1M DNA 601 B 1 
HETATM 14 C C1N DNA . . . F 2 -56.196 6.993 3.538 1 85.59 ? C1N DNA 601 B 1 
HETATM 15 C C1O DNA . . . F 2 -55.705 7.504 4.84 1 83.87 ? C1O DNA 601 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           15 
#