data_6O0Q
#
_model_server_result.job_id            '_rYc1flmY_P78bAVxhzLgg' 
_model_server_result.datetime_utc      '2024-11-30 04:07:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o0q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":801}' 
#
_entry.id    6O0Q 
#
_exptl.entry_id    6O0Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-ribofuranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6O0Q 
_cell.length_a            32.986 
_cell.length_b            86.019 
_cell.length_c            116.684 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O0Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                BDR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-ribofuranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-ribose;D-ribose;ribose;BETA-D-RIBOFURANOSYL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 O4 BDR sing 70 n n 
C4 C3 BDR sing 71 n n 
C4 C5 BDR sing 72 n n 
C4 H4 BDR sing 73 n n 
O4 C1 BDR sing 74 n n 
C1 O1 BDR sing 75 n n 
C1 C2 BDR sing 76 n n 
C1 H1 BDR sing 77 n n 
O1 HO1 BDR sing 78 n n 
C2 O2 BDR sing 79 n n 
C2 C3 BDR sing 80 n n 
C2 H2 BDR sing 81 n n 
O2 HO2 BDR sing 82 n n 
C3 O3 BDR sing 83 n n 
C3 H3 BDR sing 84 n n 
O3 HO3 BDR sing 85 n n 
C5 O5 BDR sing 86 n n 
C5 H51 BDR sing 87 n n 
C5 H52 BDR sing 88 n n 
O5 HO5 BDR sing 89 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
BDR DRibfb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
BDR b-D-ribofuranose 'COMMON NAME' GMML 1 
BDR b-D-Ribf 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
BDR Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6O0Q 
_atom_sites.fract_transf_matrix[1][1]    0.030316 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00857 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BDR A 1 801 801 BDR BDR . 
D 3 CL A 1 802 802 CL CL . 
E 2 BDR B 1 801 801 BDR BDR . 
F 3 CL B 1 802 802 CL CL . 
G 4 HOH A 1 901 901 HOH HOH . 
G 4 HOH A 2 902 902 HOH HOH . 
G 4 HOH A 3 903 903 HOH HOH . 
G 4 HOH A 4 904 904 HOH HOH . 
G 4 HOH A 5 905 905 HOH HOH . 
G 4 HOH A 6 906 906 HOH HOH . 
G 4 HOH A 7 907 907 HOH HOH . 
G 4 HOH A 8 908 908 HOH HOH . 
G 4 HOH A 9 909 909 HOH HOH . 
G 4 HOH A 10 910 910 HOH HOH . 
G 4 HOH A 11 911 911 HOH HOH . 
G 4 HOH A 12 912 912 HOH HOH . 
G 4 HOH A 13 913 913 HOH HOH . 
G 4 HOH A 14 914 914 HOH HOH . 
G 4 HOH A 15 915 915 HOH HOH . 
G 4 HOH A 16 916 916 HOH HOH . 
G 4 HOH A 17 917 917 HOH HOH . 
G 4 HOH A 18 918 918 HOH HOH . 
G 4 HOH A 19 919 919 HOH HOH . 
G 4 HOH A 20 920 920 HOH HOH . 
G 4 HOH A 21 921 921 HOH HOH . 
G 4 HOH A 22 922 922 HOH HOH . 
G 4 HOH A 23 923 923 HOH HOH . 
G 4 HOH A 24 924 924 HOH HOH . 
G 4 HOH A 25 925 925 HOH HOH . 
G 4 HOH A 26 926 926 HOH HOH . 
G 4 HOH A 27 927 927 HOH HOH . 
G 4 HOH A 28 928 928 HOH HOH . 
G 4 HOH A 29 929 929 HOH HOH . 
G 4 HOH A 30 930 930 HOH HOH . 
G 4 HOH A 31 931 931 HOH HOH . 
G 4 HOH A 32 932 932 HOH HOH . 
G 4 HOH A 33 933 933 HOH HOH . 
G 4 HOH A 34 934 934 HOH HOH . 
G 4 HOH A 35 935 935 HOH HOH . 
G 4 HOH A 36 936 936 HOH HOH . 
G 4 HOH A 37 937 937 HOH HOH . 
G 4 HOH A 38 938 938 HOH HOH . 
G 4 HOH A 39 939 939 HOH HOH . 
G 4 HOH A 40 940 940 HOH HOH . 
G 4 HOH A 41 941 941 HOH HOH . 
G 4 HOH A 42 942 942 HOH HOH . 
G 4 HOH A 43 943 943 HOH HOH . 
G 4 HOH A 44 944 944 HOH HOH . 
G 4 HOH A 45 945 945 HOH HOH . 
G 4 HOH A 46 946 946 HOH HOH . 
G 4 HOH A 47 947 947 HOH HOH . 
G 4 HOH A 48 948 948 HOH HOH . 
G 4 HOH A 49 949 949 HOH HOH . 
G 4 HOH A 50 950 950 HOH HOH . 
G 4 HOH A 51 951 951 HOH HOH . 
G 4 HOH A 52 952 952 HOH HOH . 
G 4 HOH A 53 953 953 HOH HOH . 
G 4 HOH A 54 954 954 HOH HOH . 
G 4 HOH A 55 955 955 HOH HOH . 
G 4 HOH A 56 956 956 HOH HOH . 
G 4 HOH A 57 957 957 HOH HOH . 
G 4 HOH A 58 958 958 HOH HOH . 
G 4 HOH A 59 959 959 HOH HOH . 
G 4 HOH A 60 960 960 HOH HOH . 
G 4 HOH A 61 961 961 HOH HOH . 
G 4 HOH A 62 962 962 HOH HOH . 
G 4 HOH A 63 963 963 HOH HOH . 
G 4 HOH A 64 964 964 HOH HOH . 
G 4 HOH A 65 965 965 HOH HOH . 
G 4 HOH A 66 966 966 HOH HOH . 
G 4 HOH A 67 967 967 HOH HOH . 
G 4 HOH A 68 968 968 HOH HOH . 
G 4 HOH A 69 969 969 HOH HOH . 
G 4 HOH A 70 970 970 HOH HOH . 
G 4 HOH A 71 971 971 HOH HOH . 
G 4 HOH A 72 972 972 HOH HOH . 
G 4 HOH A 73 973 973 HOH HOH . 
G 4 HOH A 74 974 974 HOH HOH . 
G 4 HOH A 75 975 975 HOH HOH . 
G 4 HOH A 76 976 976 HOH HOH . 
G 4 HOH A 77 977 977 HOH HOH . 
G 4 HOH A 78 978 978 HOH HOH . 
G 4 HOH A 79 979 979 HOH HOH . 
G 4 HOH A 80 980 980 HOH HOH . 
G 4 HOH A 81 981 981 HOH HOH . 
G 4 HOH A 82 982 982 HOH HOH . 
G 4 HOH A 83 983 983 HOH HOH . 
G 4 HOH A 84 984 984 HOH HOH . 
H 4 HOH B 1 901 901 HOH HOH . 
H 4 HOH B 2 902 902 HOH HOH . 
H 4 HOH B 3 903 903 HOH HOH . 
H 4 HOH B 4 904 904 HOH HOH . 
H 4 HOH B 5 905 905 HOH HOH . 
H 4 HOH B 6 906 906 HOH HOH . 
H 4 HOH B 7 907 907 HOH HOH . 
H 4 HOH B 8 908 908 HOH HOH . 
H 4 HOH B 9 909 909 HOH HOH . 
H 4 HOH B 10 910 910 HOH HOH . 
H 4 HOH B 11 911 911 HOH HOH . 
H 4 HOH B 12 912 912 HOH HOH . 
H 4 HOH B 13 913 913 HOH HOH . 
H 4 HOH B 14 914 914 HOH HOH . 
H 4 HOH B 15 915 915 HOH HOH . 
H 4 HOH B 16 916 916 HOH HOH . 
H 4 HOH B 17 917 917 HOH HOH . 
H 4 HOH B 18 918 918 HOH HOH . 
H 4 HOH B 19 919 919 HOH HOH . 
H 4 HOH B 20 920 920 HOH HOH . 
H 4 HOH B 21 921 921 HOH HOH . 
H 4 HOH B 22 922 922 HOH HOH . 
H 4 HOH B 23 923 923 HOH HOH . 
H 4 HOH B 24 924 924 HOH HOH . 
H 4 HOH B 25 925 925 HOH HOH . 
H 4 HOH B 26 926 926 HOH HOH . 
H 4 HOH B 27 927 927 HOH HOH . 
H 4 HOH B 28 928 928 HOH HOH . 
H 4 HOH B 29 929 929 HOH HOH . 
H 4 HOH B 30 930 930 HOH HOH . 
H 4 HOH B 31 931 931 HOH HOH . 
H 4 HOH B 32 932 932 HOH HOH . 
H 4 HOH B 33 933 933 HOH HOH . 
H 4 HOH B 34 934 934 HOH HOH . 
H 4 HOH B 35 935 935 HOH HOH . 
H 4 HOH B 36 936 936 HOH HOH . 
H 4 HOH B 37 937 937 HOH HOH . 
H 4 HOH B 38 938 938 HOH HOH . 
H 4 HOH B 39 939 939 HOH HOH . 
H 4 HOH B 40 940 940 HOH HOH . 
H 4 HOH B 41 941 941 HOH HOH . 
H 4 HOH B 42 942 942 HOH HOH . 
H 4 HOH B 43 943 943 HOH HOH . 
H 4 HOH B 44 944 944 HOH HOH . 
H 4 HOH B 45 945 945 HOH HOH . 
H 4 HOH B 46 946 946 HOH HOH . 
H 4 HOH B 47 947 947 HOH HOH . 
H 4 HOH B 48 948 948 HOH HOH . 
H 4 HOH B 49 949 949 HOH HOH . 
H 4 HOH B 50 950 950 HOH HOH . 
H 4 HOH B 51 951 951 HOH HOH . 
H 4 HOH B 52 952 952 HOH HOH . 
H 4 HOH B 53 953 953 HOH HOH . 
H 4 HOH B 54 954 954 HOH HOH . 
H 4 HOH B 55 955 955 HOH HOH . 
H 4 HOH B 56 956 956 HOH HOH . 
H 4 HOH B 57 957 957 HOH HOH . 
H 4 HOH B 58 958 958 HOH HOH . 
H 4 HOH B 59 959 959 HOH HOH . 
H 4 HOH B 60 960 960 HOH HOH . 
H 4 HOH B 61 961 961 HOH HOH . 
H 4 HOH B 62 962 962 HOH HOH . 
H 4 HOH B 63 963 963 HOH HOH . 
H 4 HOH B 64 964 964 HOH HOH . 
H 4 HOH B 65 965 965 HOH HOH . 
H 4 HOH B 66 966 966 HOH HOH . 
H 4 HOH B 67 967 967 HOH HOH . 
H 4 HOH B 68 968 968 HOH HOH . 
H 4 HOH B 69 969 969 HOH HOH . 
H 4 HOH B 70 970 970 HOH HOH . 
H 4 HOH B 71 971 971 HOH HOH . 
H 4 HOH B 72 972 972 HOH HOH . 
H 4 HOH B 73 973 973 HOH HOH . 
H 4 HOH B 74 974 974 HOH HOH . 
H 4 HOH B 75 975 975 HOH HOH . 
H 4 HOH B 76 976 976 HOH HOH . 
H 4 HOH B 77 977 977 HOH HOH . 
H 4 HOH B 78 978 978 HOH HOH . 
H 4 HOH B 79 979 979 HOH HOH . 
H 4 HOH B 80 980 980 HOH HOH . 
H 4 HOH B 81 981 981 HOH HOH . 
H 4 HOH B 82 982 982 HOH HOH . 
H 4 HOH B 83 983 983 HOH HOH . 
H 4 HOH B 84 984 984 HOH HOH . 
H 4 HOH B 85 985 985 HOH HOH . 
H 4 HOH B 86 986 986 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 BDR . . . C 2 20.824 31.402 25.804 1 61.58 ? C4 BDR 801 A 1 
HETATM 2 O O4 BDR . . . C 2 21.53 31.936 24.669 1 70.67 ? O4 BDR 801 A 1 
HETATM 3 C C1 BDR . . . C 2 22.459 30.949 24.234 1 79.82 ? C1 BDR 801 A 1 
HETATM 4 O O1 BDR . . . C 2 23.683 31.066 24.906 1 91.84 ? O1 BDR 801 A 1 
HETATM 5 C C2 BDR . . . C 2 21.836 29.604 24.629 1 65.84 ? C2 BDR 801 A 1 
HETATM 6 O O2 BDR . . . C 2 21.615 28.84 23.446 1 39.93 ? O2 BDR 801 A 1 
HETATM 7 C C3 BDR . . . C 2 20.551 29.977 25.385 1 53.12 ? C3 BDR 801 A 1 
HETATM 8 O O3 BDR . . . C 2 19.381 29.984 24.586 1 27.71 ? O3 BDR 801 A 1 
HETATM 9 C C5 BDR . . . C 2 21.634 31.521 27.068 1 64.97 ? C5 BDR 801 A 1 
HETATM 10 O O5 BDR . . . C 2 22.582 30.474 27.243 1 55.4 ? O5 BDR 801 A 1 
HETATM 11 H H4 BDR . . . C 2 19.952 32.051 25.81 1 73.94 ? H4 BDR 801 A 1 
HETATM 12 H H1 BDR . . . C 2 22.679 31.071 23.174 1 95.83 ? H1 BDR 801 A 1 
HETATM 13 H HO1 BDR . . . C 2 24.429 31.074 24.251 1 110.25 ? HO1 BDR 801 A 1 
HETATM 14 H H2 BDR . . . C 2 22.49 29.026 25.279 1 79.06 ? H2 BDR 801 A 1 
HETATM 15 H HO2 BDR . . . C 2 22.394 28.229 23.365 1 47.96 ? HO2 BDR 801 A 1 
HETATM 16 H H3 BDR . . . C 2 20.386 29.33 26.245 1 63.79 ? H3 BDR 801 A 1 
HETATM 17 H HO3 BDR . . . C 2 19.373 29.131 24.078 1 33.29 ? HO3 BDR 801 A 1 
HETATM 18 H H51 BDR . . . C 2 22.147 32.481 27.081 1 78.01 ? H51 BDR 801 A 1 
HETATM 19 H H52 BDR . . . C 2 20.951 31.536 27.916 1 78.01 ? H52 BDR 801 A 1 
HETATM 20 H HO5 BDR . . . C 2 23.417 30.914 27.55 1 66.53 ? HO5 BDR 801 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#