data_6O10 # _model_server_result.job_id iPQG9NAxN4m-xJumgX47qg _model_server_result.datetime_utc '2024-11-30 17:02:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6O10 # _exptl.entry_id 6O10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O10 _cell.length_a 126.4 _cell.length_b 126.4 _cell.length_c 133.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 226 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 226 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.427 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 6O10 _atom_sites.fract_transf_matrix[1][1] 0.007911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 501 500 PLP PLP . C 3 CL A 1 502 701 CL CL . D 4 HOH A 1 601 642 HOH HOH . D 4 HOH A 2 602 576 HOH HOH . D 4 HOH A 3 603 583 HOH HOH . D 4 HOH A 4 604 651 HOH HOH . D 4 HOH A 5 605 531 HOH HOH . D 4 HOH A 6 606 536 HOH HOH . D 4 HOH A 7 607 605 HOH HOH . D 4 HOH A 8 608 556 HOH HOH . D 4 HOH A 9 609 575 HOH HOH . D 4 HOH A 10 610 628 HOH HOH . D 4 HOH A 11 611 636 HOH HOH . D 4 HOH A 12 612 574 HOH HOH . D 4 HOH A 13 613 622 HOH HOH . D 4 HOH A 14 614 587 HOH HOH . D 4 HOH A 15 615 649 HOH HOH . D 4 HOH A 16 616 579 HOH HOH . D 4 HOH A 17 617 624 HOH HOH . D 4 HOH A 18 618 590 HOH HOH . D 4 HOH A 19 619 557 HOH HOH . D 4 HOH A 20 620 643 HOH HOH . D 4 HOH A 21 621 625 HOH HOH . D 4 HOH A 22 622 518 HOH HOH . D 4 HOH A 23 623 510 HOH HOH . D 4 HOH A 24 624 611 HOH HOH . D 4 HOH A 25 625 517 HOH HOH . D 4 HOH A 26 626 647 HOH HOH . D 4 HOH A 27 627 595 HOH HOH . D 4 HOH A 28 628 553 HOH HOH . D 4 HOH A 29 629 516 HOH HOH . D 4 HOH A 30 630 503 HOH HOH . D 4 HOH A 31 631 545 HOH HOH . D 4 HOH A 32 632 635 HOH HOH . D 4 HOH A 33 633 585 HOH HOH . D 4 HOH A 34 634 652 HOH HOH . D 4 HOH A 35 635 507 HOH HOH . D 4 HOH A 36 636 520 HOH HOH . D 4 HOH A 37 637 634 HOH HOH . D 4 HOH A 38 638 551 HOH HOH . D 4 HOH A 39 639 515 HOH HOH . D 4 HOH A 40 640 593 HOH HOH . D 4 HOH A 41 641 592 HOH HOH . D 4 HOH A 42 642 506 HOH HOH . D 4 HOH A 43 643 609 HOH HOH . D 4 HOH A 44 644 547 HOH HOH . D 4 HOH A 45 645 558 HOH HOH . D 4 HOH A 46 646 626 HOH HOH . D 4 HOH A 47 647 602 HOH HOH . D 4 HOH A 48 648 509 HOH HOH . D 4 HOH A 49 649 573 HOH HOH . D 4 HOH A 50 650 621 HOH HOH . D 4 HOH A 51 651 650 HOH HOH . D 4 HOH A 52 652 638 HOH HOH . D 4 HOH A 53 653 523 HOH HOH . D 4 HOH A 54 654 603 HOH HOH . D 4 HOH A 55 655 641 HOH HOH . D 4 HOH A 56 656 580 HOH HOH . D 4 HOH A 57 657 546 HOH HOH . D 4 HOH A 58 658 513 HOH HOH . D 4 HOH A 59 659 613 HOH HOH . D 4 HOH A 60 660 667 HOH HOH . D 4 HOH A 61 661 637 HOH HOH . D 4 HOH A 62 662 588 HOH HOH . D 4 HOH A 63 663 581 HOH HOH . D 4 HOH A 64 664 508 HOH HOH . D 4 HOH A 65 665 577 HOH HOH . D 4 HOH A 66 666 527 HOH HOH . D 4 HOH A 67 667 655 HOH HOH . D 4 HOH A 68 668 538 HOH HOH . D 4 HOH A 69 669 630 HOH HOH . D 4 HOH A 70 670 530 HOH HOH . D 4 HOH A 71 671 564 HOH HOH . D 4 HOH A 72 672 646 HOH HOH . D 4 HOH A 73 673 539 HOH HOH . D 4 HOH A 74 674 528 HOH HOH . D 4 HOH A 75 675 541 HOH HOH . D 4 HOH A 76 676 648 HOH HOH . D 4 HOH A 77 677 633 HOH HOH . D 4 HOH A 78 678 571 HOH HOH . D 4 HOH A 79 679 521 HOH HOH . D 4 HOH A 80 680 663 HOH HOH . D 4 HOH A 81 681 607 HOH HOH . D 4 HOH A 82 682 572 HOH HOH . D 4 HOH A 83 683 623 HOH HOH . D 4 HOH A 84 684 656 HOH HOH . D 4 HOH A 85 685 560 HOH HOH . D 4 HOH A 86 686 567 HOH HOH . D 4 HOH A 87 687 620 HOH HOH . D 4 HOH A 88 688 666 HOH HOH . D 4 HOH A 89 689 565 HOH HOH . D 4 HOH A 90 690 614 HOH HOH . D 4 HOH A 91 691 645 HOH HOH . D 4 HOH A 92 692 519 HOH HOH . D 4 HOH A 93 693 658 HOH HOH . D 4 HOH A 94 694 570 HOH HOH . D 4 HOH A 95 695 639 HOH HOH . D 4 HOH A 96 696 604 HOH HOH . D 4 HOH A 97 697 543 HOH HOH . D 4 HOH A 98 698 549 HOH HOH . D 4 HOH A 99 699 600 HOH HOH . D 4 HOH A 100 700 532 HOH HOH . D 4 HOH A 101 701 594 HOH HOH . D 4 HOH A 102 702 591 HOH HOH . D 4 HOH A 103 703 589 HOH HOH . D 4 HOH A 104 704 569 HOH HOH . D 4 HOH A 105 705 512 HOH HOH . D 4 HOH A 106 706 563 HOH HOH . D 4 HOH A 107 707 657 HOH HOH . D 4 HOH A 108 708 578 HOH HOH . D 4 HOH A 109 709 632 HOH HOH . D 4 HOH A 110 710 606 HOH HOH . D 4 HOH A 111 711 660 HOH HOH . D 4 HOH A 112 712 661 HOH HOH . D 4 HOH A 113 713 554 HOH HOH . D 4 HOH A 114 714 562 HOH HOH . D 4 HOH A 115 715 566 HOH HOH . D 4 HOH A 116 716 561 HOH HOH . D 4 HOH A 117 717 582 HOH HOH . D 4 HOH A 118 718 522 HOH HOH . D 4 HOH A 119 719 552 HOH HOH . D 4 HOH A 120 720 504 HOH HOH . D 4 HOH A 121 721 542 HOH HOH . D 4 HOH A 122 722 598 HOH HOH . D 4 HOH A 123 723 616 HOH HOH . D 4 HOH A 124 724 555 HOH HOH . D 4 HOH A 125 725 619 HOH HOH . D 4 HOH A 126 726 599 HOH HOH . D 4 HOH A 127 727 659 HOH HOH . D 4 HOH A 128 728 586 HOH HOH . D 4 HOH A 129 729 597 HOH HOH . D 4 HOH A 130 730 615 HOH HOH . D 4 HOH A 131 731 514 HOH HOH . D 4 HOH A 132 732 568 HOH HOH . D 4 HOH A 133 733 703 HOH HOH . D 4 HOH A 134 734 702 HOH HOH . D 4 HOH A 135 735 540 HOH HOH . D 4 HOH A 136 736 544 HOH HOH . D 4 HOH A 137 737 596 HOH HOH . D 4 HOH A 138 738 548 HOH HOH . D 4 HOH A 139 739 618 HOH HOH . D 4 HOH A 140 740 537 HOH HOH . D 4 HOH A 141 741 533 HOH HOH . D 4 HOH A 142 742 608 HOH HOH . D 4 HOH A 143 743 584 HOH HOH . D 4 HOH A 144 744 678 HOH HOH . D 4 HOH A 145 745 550 HOH HOH . D 4 HOH A 146 746 535 HOH HOH . D 4 HOH A 147 747 529 HOH HOH . D 4 HOH A 148 748 612 HOH HOH . D 4 HOH A 149 749 534 HOH HOH . D 4 HOH A 150 750 601 HOH HOH . D 4 HOH A 151 751 629 HOH HOH . D 4 HOH A 152 752 559 HOH HOH . D 4 HOH A 153 753 676 HOH HOH . D 4 HOH A 154 754 526 HOH HOH . D 4 HOH A 155 755 617 HOH HOH . D 4 HOH A 156 756 525 HOH HOH . D 4 HOH A 157 757 505 HOH HOH . D 4 HOH A 158 758 502 HOH HOH . D 4 HOH A 159 759 681 HOH HOH . D 4 HOH A 160 760 640 HOH HOH . D 4 HOH A 161 761 524 HOH HOH . D 4 HOH A 162 762 664 HOH HOH . D 4 HOH A 163 763 665 HOH HOH . D 4 HOH A 164 764 631 HOH HOH . D 4 HOH A 165 765 653 HOH HOH . D 4 HOH A 166 766 680 HOH HOH . D 4 HOH A 167 767 679 HOH HOH . D 4 HOH A 168 768 610 HOH HOH . D 4 HOH A 169 769 677 HOH HOH . D 4 HOH A 170 770 644 HOH HOH . D 4 HOH A 171 771 654 HOH HOH . D 4 HOH A 172 772 662 HOH HOH . D 4 HOH A 173 773 627 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 25.905 45.697 7.602 0.98 42.19 ? N1 PLP 501 A 1 HETATM 2 C C2 PLP . . . B 2 25.868 47.014 7.913 0.98 45.93 ? C2 PLP 501 A 1 HETATM 3 C C2A PLP . . . B 2 25.031 47.583 9.051 0.98 46.36 ? C2A PLP 501 A 1 HETATM 4 C C3 PLP . . . B 2 26.663 47.813 7.114 0.98 45.61 ? C3 PLP 501 A 1 HETATM 5 O O3 PLP . . . B 2 26.7 49.126 7.341 0.98 49.07 ? O3 PLP 501 A 1 HETATM 6 C C4 PLP . . . B 2 27.409 47.192 6.098 0.98 44.79 ? C4 PLP 501 A 1 HETATM 7 C C4A PLP . . . B 2 28.299 48.05 5.184 0.98 51.69 ? C4A PLP 501 A 1 HETATM 8 C C5 PLP . . . B 2 27.386 45.804 5.823 0.98 44.78 ? C5 PLP 501 A 1 HETATM 9 C C6 PLP . . . B 2 26.597 45.053 6.63 0.98 43.22 ? C6 PLP 501 A 1 HETATM 10 C C5A PLP . . . B 2 28.21 45.221 4.699 0.98 42.9 ? C5A PLP 501 A 1 HETATM 11 O O4P PLP . . . B 2 29.648 45.312 4.891 0.98 44.92 ? O4P PLP 501 A 1 HETATM 12 P P PLP . . . B 2 30.545 44.886 3.687 0.98 45.92 ? P PLP 501 A 1 HETATM 13 O O1P PLP . . . B 2 30.075 45.567 2.455 0.98 45.67 ? O1P PLP 501 A 1 HETATM 14 O O2P PLP . . . B 2 31.867 45.445 4.245 0.98 44.54 ? O2P PLP 501 A 1 HETATM 15 O O3P PLP . . . B 2 30.452 43.421 3.625 0.98 41.66 ? O3P PLP 501 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #