data_6O11 # _model_server_result.job_id nl2VYn6q_UV93ZUSTiwDMw _model_server_result.datetime_utc '2024-11-24 15:12:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6O11 # _exptl.entry_id 6O11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.301 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O11 _cell.length_a 126.426 _cell.length_b 126.426 _cell.length_c 67.087 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H17 N2 O7 P S' _chem_comp.formula_weight 352.301 _chem_comp.id C6P _chem_comp.mon_nstd_flag . _chem_comp.name N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-((1-CARBOXY-2-THIOL-ETHYLAMINO)-METHYL)-3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDINIUM # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA C6P sing 70 n n N C4A C6P sing 71 n n N HN C6P sing 72 n n C O C6P doub 73 n n C CA C6P sing 74 n n C OXT C6P sing 75 n n P OP2 C6P doub 76 n n P OP1 C6P sing 77 n n P OP3 C6P sing 78 n n P OP4 C6P sing 79 n n OP3 HOP3 C6P sing 80 n n OP1 HOP1 C6P sing 81 n n OP4 C5M C6P sing 82 n n C5M C5 C6P sing 83 n n C5M H5M1 C6P sing 84 n n C5M H5M2 C6P sing 85 n n C5 C4 C6P sing 86 n y C5 C6 C6P doub 87 n y C6 N1 C6P sing 88 n y C6 H6 C6P sing 89 n n N1 C2 C6P doub 90 n y C2 C3 C6P sing 91 n y C2 C2A C6P sing 92 n n C2A H2A1 C6P sing 93 n n C2A H2A2 C6P sing 94 n n C2A H2A3 C6P sing 95 n n C3 C4 C6P doub 96 n y C3 O3 C6P sing 97 n n O3 HO3 C6P sing 98 n n C4 C4A C6P sing 99 n n C4A H4A1 C6P sing 100 n n C4A H4A2 C6P sing 101 n n CA CB C6P sing 102 n n CA HA C6P sing 103 n n OXT HOXT C6P sing 104 n n CB SG C6P sing 105 n n CB HB1 C6P sing 106 n n CB HB2 C6P sing 107 n n SG HSG C6P sing 108 n n # _atom_sites.entry_id 6O11 _atom_sites.fract_transf_matrix[1][1] 0.00791 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 501 501 CL CL . C 3 C6P A 1 502 701 C6P C6P . D 4 HOH A 1 601 572 HOH HOH . D 4 HOH A 2 602 520 HOH HOH . D 4 HOH A 3 603 528 HOH HOH . D 4 HOH A 4 604 526 HOH HOH . D 4 HOH A 5 605 545 HOH HOH . D 4 HOH A 6 606 592 HOH HOH . D 4 HOH A 7 607 596 HOH HOH . D 4 HOH A 8 608 532 HOH HOH . D 4 HOH A 9 609 588 HOH HOH . D 4 HOH A 10 610 504 HOH HOH . D 4 HOH A 11 611 598 HOH HOH . D 4 HOH A 12 612 547 HOH HOH . D 4 HOH A 13 613 516 HOH HOH . D 4 HOH A 14 614 566 HOH HOH . D 4 HOH A 15 615 551 HOH HOH . D 4 HOH A 16 616 552 HOH HOH . D 4 HOH A 17 617 563 HOH HOH . D 4 HOH A 18 618 553 HOH HOH . D 4 HOH A 19 619 536 HOH HOH . D 4 HOH A 20 620 525 HOH HOH . D 4 HOH A 21 621 567 HOH HOH . D 4 HOH A 22 622 508 HOH HOH . D 4 HOH A 23 623 554 HOH HOH . D 4 HOH A 24 624 562 HOH HOH . D 4 HOH A 25 625 544 HOH HOH . D 4 HOH A 26 626 559 HOH HOH . D 4 HOH A 27 627 527 HOH HOH . D 4 HOH A 28 628 518 HOH HOH . D 4 HOH A 29 629 509 HOH HOH . D 4 HOH A 30 630 576 HOH HOH . D 4 HOH A 31 631 586 HOH HOH . D 4 HOH A 32 632 537 HOH HOH . D 4 HOH A 33 633 512 HOH HOH . D 4 HOH A 34 634 517 HOH HOH . D 4 HOH A 35 635 584 HOH HOH . D 4 HOH A 36 636 506 HOH HOH . D 4 HOH A 37 637 548 HOH HOH . D 4 HOH A 38 638 549 HOH HOH . D 4 HOH A 39 639 538 HOH HOH . D 4 HOH A 40 640 511 HOH HOH . D 4 HOH A 41 641 514 HOH HOH . D 4 HOH A 42 642 513 HOH HOH . D 4 HOH A 43 643 529 HOH HOH . D 4 HOH A 44 644 524 HOH HOH . D 4 HOH A 45 645 585 HOH HOH . D 4 HOH A 46 646 557 HOH HOH . D 4 HOH A 47 647 534 HOH HOH . D 4 HOH A 48 648 591 HOH HOH . D 4 HOH A 49 649 555 HOH HOH . D 4 HOH A 50 650 510 HOH HOH . D 4 HOH A 51 651 564 HOH HOH . D 4 HOH A 52 652 578 HOH HOH . D 4 HOH A 53 653 522 HOH HOH . D 4 HOH A 54 654 507 HOH HOH . D 4 HOH A 55 655 530 HOH HOH . D 4 HOH A 56 656 575 HOH HOH . D 4 HOH A 57 657 533 HOH HOH . D 4 HOH A 58 658 597 HOH HOH . D 4 HOH A 59 659 561 HOH HOH . D 4 HOH A 60 660 590 HOH HOH . D 4 HOH A 61 661 531 HOH HOH . D 4 HOH A 62 662 589 HOH HOH . D 4 HOH A 63 663 599 HOH HOH . D 4 HOH A 64 664 539 HOH HOH . D 4 HOH A 65 665 593 HOH HOH . D 4 HOH A 66 666 550 HOH HOH . D 4 HOH A 67 667 541 HOH HOH . D 4 HOH A 68 668 523 HOH HOH . D 4 HOH A 69 669 582 HOH HOH . D 4 HOH A 70 670 560 HOH HOH . D 4 HOH A 71 671 543 HOH HOH . D 4 HOH A 72 672 587 HOH HOH . D 4 HOH A 73 673 574 HOH HOH . D 4 HOH A 74 674 556 HOH HOH . D 4 HOH A 75 675 570 HOH HOH . D 4 HOH A 76 676 542 HOH HOH . D 4 HOH A 77 677 579 HOH HOH . D 4 HOH A 78 678 521 HOH HOH . D 4 HOH A 79 679 583 HOH HOH . D 4 HOH A 80 680 519 HOH HOH . D 4 HOH A 81 681 569 HOH HOH . D 4 HOH A 82 682 515 HOH HOH . D 4 HOH A 83 683 565 HOH HOH . D 4 HOH A 84 684 580 HOH HOH . D 4 HOH A 85 685 573 HOH HOH . D 4 HOH A 86 686 594 HOH HOH . D 4 HOH A 87 687 505 HOH HOH . D 4 HOH A 88 688 571 HOH HOH . D 4 HOH A 89 689 540 HOH HOH . D 4 HOH A 90 690 546 HOH HOH . D 4 HOH A 91 691 581 HOH HOH . D 4 HOH A 92 692 558 HOH HOH . D 4 HOH A 93 693 502 HOH HOH . D 4 HOH A 94 694 600 HOH HOH . D 4 HOH A 95 695 595 HOH HOH . D 4 HOH A 96 696 568 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N C6P . . . C 3 28.22 49.685 4.803 0.9 49.91 ? N C6P 502 A 1 HETATM 2 C C C6P . . . C 3 27.055 51.77 3.757 0.9 42.26 ? C C6P 502 A 1 HETATM 3 O O C6P . . . C 3 27.29 52.698 2.956 0.9 39.36 ? O C6P 502 A 1 HETATM 4 P P C6P . . . C 3 30.711 45.194 3.83 0.91 36.74 ? P C6P 502 A 1 HETATM 5 O OP3 C6P . . . C 3 30.19 45.893 2.58 0.91 38.15 ? OP3 C6P 502 A 1 HETATM 6 O OP1 C6P . . . C 3 30.601 43.683 3.702 0.91 35.58 ? OP1 C6P 502 A 1 HETATM 7 O OP2 C6P . . . C 3 32.068 45.675 4.3 0.91 36.37 ? OP2 C6P 502 A 1 HETATM 8 O OP4 C6P . . . C 3 29.654 45.635 4.958 0.91 36.09 ? OP4 C6P 502 A 1 HETATM 9 C C5M C6P . . . C 3 28.238 45.369 4.768 0.91 37.7 ? C5M C6P 502 A 1 HETATM 10 C C5 C6P . . . C 3 27.425 46.035 5.859 0.91 38.91 ? C5 C6P 502 A 1 HETATM 11 C C6 C6P . . . C 3 26.808 45.268 6.85 0.91 40.57 ? C6 C6P 502 A 1 HETATM 12 N N1 C6P . . . C 3 26.091 45.834 7.825 0.91 36.18 ? N1 C6P 502 A 1 HETATM 13 C C2 C6P . . . C 3 25.901 47.16 7.952 0.91 39.54 ? C2 C6P 502 A 1 HETATM 14 C C2A C6P . . . C 3 25.091 47.709 9.102 0.91 40.24 ? C2A C6P 502 A 1 HETATM 15 C C3 C6P . . . C 3 26.521 48.09 6.991 0.91 38.37 ? C3 C6P 502 A 1 HETATM 16 O O3 C6P . . . C 3 26.338 49.42 7.12 0.91 41.48 ? O3 C6P 502 A 1 HETATM 17 C C4 C6P . . . C 3 27.31 47.505 5.898 0.91 38.53 ? C4 C6P 502 A 1 HETATM 18 C C4A C6P . . . C 3 27.958 48.266 4.763 0.91 46.27 ? C4A C6P 502 A 1 HETATM 19 C CA C6P . . . C 3 28.089 50.684 3.729 0.9 45.52 ? CA C6P 502 A 1 HETATM 20 O OXT C6P . . . C 3 26.113 51.766 4.568 0.9 42.3 ? OXT C6P 502 A 1 HETATM 21 C CB C6P . . . C 3 28.259 49.998 2.346 0.9 41.73 ? CB C6P 502 A 1 HETATM 22 S SG C6P . . . C 3 26.826 49.212 1.537 0.9 40.27 ? SG C6P 502 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #