data_6O11
#
_model_server_result.job_id            w2EXpTZOHQp-f9vqxJ4KuQ 
_model_server_result.datetime_utc      '2024-11-01 09:31:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o11 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    6O11 
#
_exptl.entry_id    6O11 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              352.301 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6O11 
_cell.length_a            126.426 
_cell.length_b            126.426 
_cell.length_c            67.087 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O11 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H17 N2 O7 P S' 
_chem_comp.formula_weight    352.301 
_chem_comp.id                C6P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     4-((1-CARBOXY-2-THIOL-ETHYLAMINO)-METHYL)-3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDINIUM 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA C6P sing 70 n n 
N C4A C6P sing 71 n n 
N HN C6P sing 72 n n 
C O C6P doub 73 n n 
C CA C6P sing 74 n n 
C OXT C6P sing 75 n n 
P OP2 C6P doub 76 n n 
P OP1 C6P sing 77 n n 
P OP3 C6P sing 78 n n 
P OP4 C6P sing 79 n n 
OP3 HOP3 C6P sing 80 n n 
OP1 HOP1 C6P sing 81 n n 
OP4 C5M C6P sing 82 n n 
C5M C5 C6P sing 83 n n 
C5M H5M1 C6P sing 84 n n 
C5M H5M2 C6P sing 85 n n 
C5 C4 C6P sing 86 n y 
C5 C6 C6P doub 87 n y 
C6 N1 C6P sing 88 n y 
C6 H6 C6P sing 89 n n 
N1 C2 C6P doub 90 n y 
C2 C3 C6P sing 91 n y 
C2 C2A C6P sing 92 n n 
C2A H2A1 C6P sing 93 n n 
C2A H2A2 C6P sing 94 n n 
C2A H2A3 C6P sing 95 n n 
C3 C4 C6P doub 96 n y 
C3 O3 C6P sing 97 n n 
O3 HO3 C6P sing 98 n n 
C4 C4A C6P sing 99 n n 
C4A H4A1 C6P sing 100 n n 
C4A H4A2 C6P sing 101 n n 
CA CB C6P sing 102 n n 
CA HA C6P sing 103 n n 
OXT HOXT C6P sing 104 n n 
CB SG C6P sing 105 n n 
CB HB1 C6P sing 106 n n 
CB HB2 C6P sing 107 n n 
SG HSG C6P sing 108 n n 
#
_atom_sites.entry_id                     6O11 
_atom_sites.fract_transf_matrix[1][1]    0.00791 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00791 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014906 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 501 501 CL CL . 
C 3 C6P A 1 502 701 C6P C6P . 
D 4 HOH A 1 601 572 HOH HOH . 
D 4 HOH A 2 602 520 HOH HOH . 
D 4 HOH A 3 603 528 HOH HOH . 
D 4 HOH A 4 604 526 HOH HOH . 
D 4 HOH A 5 605 545 HOH HOH . 
D 4 HOH A 6 606 592 HOH HOH . 
D 4 HOH A 7 607 596 HOH HOH . 
D 4 HOH A 8 608 532 HOH HOH . 
D 4 HOH A 9 609 588 HOH HOH . 
D 4 HOH A 10 610 504 HOH HOH . 
D 4 HOH A 11 611 598 HOH HOH . 
D 4 HOH A 12 612 547 HOH HOH . 
D 4 HOH A 13 613 516 HOH HOH . 
D 4 HOH A 14 614 566 HOH HOH . 
D 4 HOH A 15 615 551 HOH HOH . 
D 4 HOH A 16 616 552 HOH HOH . 
D 4 HOH A 17 617 563 HOH HOH . 
D 4 HOH A 18 618 553 HOH HOH . 
D 4 HOH A 19 619 536 HOH HOH . 
D 4 HOH A 20 620 525 HOH HOH . 
D 4 HOH A 21 621 567 HOH HOH . 
D 4 HOH A 22 622 508 HOH HOH . 
D 4 HOH A 23 623 554 HOH HOH . 
D 4 HOH A 24 624 562 HOH HOH . 
D 4 HOH A 25 625 544 HOH HOH . 
D 4 HOH A 26 626 559 HOH HOH . 
D 4 HOH A 27 627 527 HOH HOH . 
D 4 HOH A 28 628 518 HOH HOH . 
D 4 HOH A 29 629 509 HOH HOH . 
D 4 HOH A 30 630 576 HOH HOH . 
D 4 HOH A 31 631 586 HOH HOH . 
D 4 HOH A 32 632 537 HOH HOH . 
D 4 HOH A 33 633 512 HOH HOH . 
D 4 HOH A 34 634 517 HOH HOH . 
D 4 HOH A 35 635 584 HOH HOH . 
D 4 HOH A 36 636 506 HOH HOH . 
D 4 HOH A 37 637 548 HOH HOH . 
D 4 HOH A 38 638 549 HOH HOH . 
D 4 HOH A 39 639 538 HOH HOH . 
D 4 HOH A 40 640 511 HOH HOH . 
D 4 HOH A 41 641 514 HOH HOH . 
D 4 HOH A 42 642 513 HOH HOH . 
D 4 HOH A 43 643 529 HOH HOH . 
D 4 HOH A 44 644 524 HOH HOH . 
D 4 HOH A 45 645 585 HOH HOH . 
D 4 HOH A 46 646 557 HOH HOH . 
D 4 HOH A 47 647 534 HOH HOH . 
D 4 HOH A 48 648 591 HOH HOH . 
D 4 HOH A 49 649 555 HOH HOH . 
D 4 HOH A 50 650 510 HOH HOH . 
D 4 HOH A 51 651 564 HOH HOH . 
D 4 HOH A 52 652 578 HOH HOH . 
D 4 HOH A 53 653 522 HOH HOH . 
D 4 HOH A 54 654 507 HOH HOH . 
D 4 HOH A 55 655 530 HOH HOH . 
D 4 HOH A 56 656 575 HOH HOH . 
D 4 HOH A 57 657 533 HOH HOH . 
D 4 HOH A 58 658 597 HOH HOH . 
D 4 HOH A 59 659 561 HOH HOH . 
D 4 HOH A 60 660 590 HOH HOH . 
D 4 HOH A 61 661 531 HOH HOH . 
D 4 HOH A 62 662 589 HOH HOH . 
D 4 HOH A 63 663 599 HOH HOH . 
D 4 HOH A 64 664 539 HOH HOH . 
D 4 HOH A 65 665 593 HOH HOH . 
D 4 HOH A 66 666 550 HOH HOH . 
D 4 HOH A 67 667 541 HOH HOH . 
D 4 HOH A 68 668 523 HOH HOH . 
D 4 HOH A 69 669 582 HOH HOH . 
D 4 HOH A 70 670 560 HOH HOH . 
D 4 HOH A 71 671 543 HOH HOH . 
D 4 HOH A 72 672 587 HOH HOH . 
D 4 HOH A 73 673 574 HOH HOH . 
D 4 HOH A 74 674 556 HOH HOH . 
D 4 HOH A 75 675 570 HOH HOH . 
D 4 HOH A 76 676 542 HOH HOH . 
D 4 HOH A 77 677 579 HOH HOH . 
D 4 HOH A 78 678 521 HOH HOH . 
D 4 HOH A 79 679 583 HOH HOH . 
D 4 HOH A 80 680 519 HOH HOH . 
D 4 HOH A 81 681 569 HOH HOH . 
D 4 HOH A 82 682 515 HOH HOH . 
D 4 HOH A 83 683 565 HOH HOH . 
D 4 HOH A 84 684 580 HOH HOH . 
D 4 HOH A 85 685 573 HOH HOH . 
D 4 HOH A 86 686 594 HOH HOH . 
D 4 HOH A 87 687 505 HOH HOH . 
D 4 HOH A 88 688 571 HOH HOH . 
D 4 HOH A 89 689 540 HOH HOH . 
D 4 HOH A 90 690 546 HOH HOH . 
D 4 HOH A 91 691 581 HOH HOH . 
D 4 HOH A 92 692 558 HOH HOH . 
D 4 HOH A 93 693 502 HOH HOH . 
D 4 HOH A 94 694 600 HOH HOH . 
D 4 HOH A 95 695 595 HOH HOH . 
D 4 HOH A 96 696 568 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N C6P . . . C 3 28.22 49.685 4.803 0.9 49.91 ? N C6P 502 A 1 
HETATM 2 C C C6P . . . C 3 27.055 51.77 3.757 0.9 42.26 ? C C6P 502 A 1 
HETATM 3 O O C6P . . . C 3 27.29 52.698 2.956 0.9 39.36 ? O C6P 502 A 1 
HETATM 4 P P C6P . . . C 3 30.711 45.194 3.83 0.91 36.74 ? P C6P 502 A 1 
HETATM 5 O OP3 C6P . . . C 3 30.19 45.893 2.58 0.91 38.15 ? OP3 C6P 502 A 1 
HETATM 6 O OP1 C6P . . . C 3 30.601 43.683 3.702 0.91 35.58 ? OP1 C6P 502 A 1 
HETATM 7 O OP2 C6P . . . C 3 32.068 45.675 4.3 0.91 36.37 ? OP2 C6P 502 A 1 
HETATM 8 O OP4 C6P . . . C 3 29.654 45.635 4.958 0.91 36.09 ? OP4 C6P 502 A 1 
HETATM 9 C C5M C6P . . . C 3 28.238 45.369 4.768 0.91 37.7 ? C5M C6P 502 A 1 
HETATM 10 C C5 C6P . . . C 3 27.425 46.035 5.859 0.91 38.91 ? C5 C6P 502 A 1 
HETATM 11 C C6 C6P . . . C 3 26.808 45.268 6.85 0.91 40.57 ? C6 C6P 502 A 1 
HETATM 12 N N1 C6P . . . C 3 26.091 45.834 7.825 0.91 36.18 ? N1 C6P 502 A 1 
HETATM 13 C C2 C6P . . . C 3 25.901 47.16 7.952 0.91 39.54 ? C2 C6P 502 A 1 
HETATM 14 C C2A C6P . . . C 3 25.091 47.709 9.102 0.91 40.24 ? C2A C6P 502 A 1 
HETATM 15 C C3 C6P . . . C 3 26.521 48.09 6.991 0.91 38.37 ? C3 C6P 502 A 1 
HETATM 16 O O3 C6P . . . C 3 26.338 49.42 7.12 0.91 41.48 ? O3 C6P 502 A 1 
HETATM 17 C C4 C6P . . . C 3 27.31 47.505 5.898 0.91 38.53 ? C4 C6P 502 A 1 
HETATM 18 C C4A C6P . . . C 3 27.958 48.266 4.763 0.91 46.27 ? C4A C6P 502 A 1 
HETATM 19 C CA C6P . . . C 3 28.089 50.684 3.729 0.9 45.52 ? CA C6P 502 A 1 
HETATM 20 O OXT C6P . . . C 3 26.113 51.766 4.568 0.9 42.3 ? OXT C6P 502 A 1 
HETATM 21 C CB C6P . . . C 3 28.259 49.998 2.346 0.9 41.73 ? CB C6P 502 A 1 
HETATM 22 S SG C6P . . . C 3 26.826 49.212 1.537 0.9 40.27 ? SG C6P 502 A 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           22 
#