data_6O13 # _model_server_result.job_id FLtbO71_Ydg5tCOvjRQoiA _model_server_result.datetime_utc '2024-11-24 13:40:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 6O13 # _exptl.entry_id 6O13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.285 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Cys-ketimine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O13 _cell.length_a 126.012 _cell.length_b 126.012 _cell.length_c 137.214 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N2 O7 P S' _chem_comp.formula_weight 350.285 _chem_comp.id CKT _chem_comp.mon_nstd_flag . _chem_comp.name Cys-ketimine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2Z)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)imino]-3-sulfanylpropanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S20 C19 CKT sing 70 n n O10 P08 CKT doub 71 n n C19 C15 CKT sing 72 n n O17 C16 CKT doub 73 n n O11 P08 CKT sing 74 n n C15 C16 CKT sing 75 n n C15 N14 CKT doub 76 n n P08 O09 CKT sing 77 n n P08 O07 CKT sing 78 n n C16 O18 CKT sing 79 n n C06 O07 CKT sing 80 n n C06 C05 CKT sing 81 n n C13 N14 CKT sing 82 n n C13 C12 CKT sing 83 n n C05 C12 CKT doub 84 n y C05 C04 CKT sing 85 n y C12 C21 CKT sing 86 n y C04 N03 CKT doub 87 n y C21 O22 CKT sing 88 n n C21 C02 CKT doub 89 n y N03 C02 CKT sing 90 n y C02 C01 CKT sing 91 n n C01 H1 CKT sing 92 n n C01 H2 CKT sing 93 n n C01 H3 CKT sing 94 n n C04 H4 CKT sing 95 n n C06 H5 CKT sing 96 n n C06 H6 CKT sing 97 n n C13 H7 CKT sing 98 n n C13 H8 CKT sing 99 n n C19 H9 CKT sing 100 n n C19 H10 CKT sing 101 n n O09 H11 CKT sing 102 n n O11 H12 CKT sing 103 n n O18 H13 CKT sing 104 n n O22 H14 CKT sing 105 n n S20 H15 CKT sing 106 n n # _atom_sites.entry_id 6O13 _atom_sites.fract_transf_matrix[1][1] 0.007936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CKT A 1 500 500 CKT CKT . C 3 CL A 1 501 501 CL CL . D 4 HOH A 1 601 707 HOH HOH . D 4 HOH A 2 602 542 HOH HOH . D 4 HOH A 3 603 705 HOH HOH . D 4 HOH A 4 604 708 HOH HOH . D 4 HOH A 5 605 552 HOH HOH . D 4 HOH A 6 606 535 HOH HOH . D 4 HOH A 7 607 537 HOH HOH . D 4 HOH A 8 608 545 HOH HOH . D 4 HOH A 9 609 532 HOH HOH . D 4 HOH A 10 610 533 HOH HOH . D 4 HOH A 11 611 522 HOH HOH . D 4 HOH A 12 612 564 HOH HOH . D 4 HOH A 13 613 551 HOH HOH . D 4 HOH A 14 614 512 HOH HOH . D 4 HOH A 15 615 1401 HOH HOH . D 4 HOH A 16 616 577 HOH HOH . D 4 HOH A 17 617 515 HOH HOH . D 4 HOH A 18 618 503 HOH HOH . D 4 HOH A 19 619 569 HOH HOH . D 4 HOH A 20 620 579 HOH HOH . D 4 HOH A 21 621 534 HOH HOH . D 4 HOH A 22 622 543 HOH HOH . D 4 HOH A 23 623 561 HOH HOH . D 4 HOH A 24 624 518 HOH HOH . D 4 HOH A 25 625 504 HOH HOH . D 4 HOH A 26 626 578 HOH HOH . D 4 HOH A 27 627 574 HOH HOH . D 4 HOH A 28 628 540 HOH HOH . D 4 HOH A 29 629 558 HOH HOH . D 4 HOH A 30 630 589 HOH HOH . D 4 HOH A 31 631 557 HOH HOH . D 4 HOH A 32 632 1002 HOH HOH . D 4 HOH A 33 633 523 HOH HOH . D 4 HOH A 34 634 572 HOH HOH . D 4 HOH A 35 635 541 HOH HOH . D 4 HOH A 36 636 583 HOH HOH . D 4 HOH A 37 637 513 HOH HOH . D 4 HOH A 38 638 526 HOH HOH . D 4 HOH A 39 639 573 HOH HOH . D 4 HOH A 40 640 582 HOH HOH . D 4 HOH A 41 641 505 HOH HOH . D 4 HOH A 42 642 511 HOH HOH . D 4 HOH A 43 643 508 HOH HOH . D 4 HOH A 44 644 536 HOH HOH . D 4 HOH A 45 645 559 HOH HOH . D 4 HOH A 46 646 576 HOH HOH . D 4 HOH A 47 647 555 HOH HOH . D 4 HOH A 48 648 502 HOH HOH . D 4 HOH A 49 649 606 HOH HOH . D 4 HOH A 50 650 549 HOH HOH . D 4 HOH A 51 651 510 HOH HOH . D 4 HOH A 52 652 581 HOH HOH . D 4 HOH A 53 653 563 HOH HOH . D 4 HOH A 54 654 544 HOH HOH . D 4 HOH A 55 655 571 HOH HOH . D 4 HOH A 56 656 605 HOH HOH . D 4 HOH A 57 657 702 HOH HOH . D 4 HOH A 58 658 560 HOH HOH . D 4 HOH A 59 659 539 HOH HOH . D 4 HOH A 60 660 553 HOH HOH . D 4 HOH A 61 661 548 HOH HOH . D 4 HOH A 62 662 550 HOH HOH . D 4 HOH A 63 663 546 HOH HOH . D 4 HOH A 64 664 554 HOH HOH . D 4 HOH A 65 665 506 HOH HOH . D 4 HOH A 66 666 711 HOH HOH . D 4 HOH A 67 667 521 HOH HOH . D 4 HOH A 68 668 562 HOH HOH . D 4 HOH A 69 669 599 HOH HOH . D 4 HOH A 70 670 547 HOH HOH . D 4 HOH A 71 671 703 HOH HOH . D 4 HOH A 72 672 568 HOH HOH . D 4 HOH A 73 673 596 HOH HOH . D 4 HOH A 74 674 709 HOH HOH . D 4 HOH A 75 675 580 HOH HOH . D 4 HOH A 76 676 592 HOH HOH . D 4 HOH A 77 677 525 HOH HOH . D 4 HOH A 78 678 529 HOH HOH . D 4 HOH A 79 679 567 HOH HOH . D 4 HOH A 80 680 706 HOH HOH . D 4 HOH A 81 681 507 HOH HOH . D 4 HOH A 82 682 710 HOH HOH . D 4 HOH A 83 683 590 HOH HOH . D 4 HOH A 84 684 531 HOH HOH . D 4 HOH A 85 685 591 HOH HOH . D 4 HOH A 86 686 604 HOH HOH . D 4 HOH A 87 687 587 HOH HOH . D 4 HOH A 88 688 528 HOH HOH . D 4 HOH A 89 689 586 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 CKT . . . B 2 24.703 47.34 9.052 0.91 49.71 ? C01 CKT 500 A 1 HETATM 2 C C02 CKT . . . B 2 25.486 46.762 7.874 0.91 55.54 ? C02 CKT 500 A 1 HETATM 3 C C04 CKT . . . B 2 26.323 44.867 6.814 0.91 54.72 ? C04 CKT 500 A 1 HETATM 4 C C05 CKT . . . B 2 26.865 45.653 5.81 0.91 54.27 ? C05 CKT 500 A 1 HETATM 5 C C06 CKT . . . B 2 27.671 45.042 4.675 0.91 55.86 ? C06 CKT 500 A 1 HETATM 6 C C12 CKT . . . B 2 26.731 47.026 5.843 0.91 60.92 ? C12 CKT 500 A 1 HETATM 7 C C13 CKT . . . B 2 27.391 47.785 4.682 0.91 61.6 ? C13 CKT 500 A 1 HETATM 8 C C15 CKT . . . B 2 26.365 49.758 4.061 0.91 62.8 ? C15 CKT 500 A 1 HETATM 9 C C16 CKT . . . B 2 26.152 51.273 3.991 0.91 62.35 ? C16 CKT 500 A 1 HETATM 10 C C19 CKT . . . B 2 25.376 48.781 3.422 0.91 70.19 ? C19 CKT 500 A 1 HETATM 11 C C21 CKT . . . B 2 26.024 47.61 6.897 0.9 57.52 ? C21 CKT 500 A 1 HETATM 12 N N03 CKT . . . B 2 25.653 45.449 7.799 0.91 50.88 ? N03 CKT 500 A 1 HETATM 13 N N14 CKT . . . B 2 27.296 49.243 4.689 0.91 64.56 ? N14 CKT 500 A 1 HETATM 14 O O07 CKT . . . B 2 29.03 45.272 4.963 0.91 56.05 ? O07 CKT 500 A 1 HETATM 15 O O09 CKT . . . B 2 31.497 45.338 4.384 0.91 56.53 -1 O09 CKT 500 A 1 HETATM 16 O O10 CKT . . . B 2 29.866 45.515 2.543 0.91 58.47 -1 O10 CKT 500 A 1 HETATM 17 O O11 CKT . . . B 2 30.218 43.366 3.713 0.91 53.89 ? O11 CKT 500 A 1 HETATM 18 O O17 CKT . . . B 2 26.539 51.989 3.018 0.91 60.46 -1 O17 CKT 500 A 1 HETATM 19 O O18 CKT . . . B 2 25.553 51.81 4.963 0.91 60.53 ? O18 CKT 500 A 1 HETATM 20 O O22 CKT . . . B 2 25.874 48.982 6.949 0.91 59.64 -1 O22 CKT 500 A 1 HETATM 21 P P08 CKT . . . B 2 30.173 44.887 3.87 0.91 54.27 ? P08 CKT 500 A 1 HETATM 22 S S20 CKT . . . B 2 25.517 49.202 1.649 0.91 89.15 ? S20 CKT 500 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #