data_6O14 # _model_server_result.job_id NJq7qpBJUJIb68viT7LPAw _model_server_result.datetime_utc '2024-11-21 14:12:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6O14 # _exptl.entry_id 6O14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O14 _cell.length_a 128.345 _cell.length_b 128.345 _cell.length_c 45.158 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 64.1725 -111.15003 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 128.345 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6O14 _atom_sites.fract_transf_matrix[1][1] 0.007791 _atom_sites.fract_transf_matrix[1][2] 0.004498 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 501 201 GOL GOL . D 2 GOL A 1 502 301 GOL GOL . E 3 HOH A 1 601 16 HOH HOH . E 3 HOH A 2 602 14 HOH HOH . E 3 HOH A 3 603 5 HOH HOH . E 3 HOH A 4 604 11 HOH HOH . E 3 HOH A 5 605 17 HOH HOH . E 3 HOH A 6 606 7 HOH HOH . E 3 HOH A 7 607 9 HOH HOH . E 3 HOH A 8 608 18 HOH HOH . E 3 HOH A 9 609 12 HOH HOH . E 3 HOH A 10 610 2 HOH HOH . E 3 HOH A 11 611 6 HOH HOH . E 3 HOH A 12 612 13 HOH HOH . E 3 HOH A 13 613 10 HOH HOH . F 3 HOH B 1 501 3 HOH HOH . F 3 HOH B 2 502 15 HOH HOH . F 3 HOH B 3 503 1 HOH HOH . F 3 HOH B 4 504 8 HOH HOH . F 3 HOH B 5 505 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 61.24 -37.97 -18.824 1 91.72 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . C 2 61.86 -37.647 -17.606 1 95.28 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . C 2 59.722 -38.095 -18.566 1 76 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . C 2 58.965 -37.204 -19.312 1 84.92 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . C 2 59.423 -39.553 -18.939 1 52.01 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . C 2 58.384 -39.528 -19.864 1 55.17 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . C 2 61.568 -38.803 -19.196 1 110.23 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . C 2 61.391 -37.296 -19.506 1 110.23 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . C 2 62.652 -37.954 -17.649 1 114.5 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . C 2 59.51 -37.891 -17.642 1 91.36 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . C 2 58.321 -37.636 -19.66 1 102.07 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . C 2 59.207 -40.046 -18.132 1 62.57 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . C 2 60.233 -39.963 -19.281 1 62.57 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . C 2 58.427 -40.257 -20.299 1 66.36 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #