data_6O1C # _model_server_result.job_id 8Jlxr0Fz5F9w9cN2PoPdQg _model_server_result.datetime_utc '2024-12-14 02:00:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o1c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 6O1C # _exptl.entry_id 6O1C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.25 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-nitrophenyl 6-deoxy-alpha-L-galactopyranoside' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O1C _cell.length_a 89.734 _cell.length_b 139.079 _cell.length_c 263.373 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O1C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,G,I,L,M,O,Q,T,U,W 1 1 B,C,F,H,J,K,N,P,R,S,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C12 H15 N O7' _chem_comp.formula_weight 285.25 _chem_comp.id JFZ _chem_comp.mon_nstd_flag n _chem_comp.name '4-nitrophenyl 6-deoxy-alpha-L-galactopyranoside' _chem_comp.type l-saccharide _chem_comp.pdbx_synonyms '4-nitrophenyl-alpha-L-fucose;4-nitrophenyl 6-deoxy-alpha-L-galactoside;4-nitrophenyl 6-deoxy-L-galactoside;4-nitrophenyl 6-deoxy-galactoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3' N1' JFZ sing 173 n n O2' N1' JFZ doub 174 n n N1' C4' JFZ sing 175 n n C3' C4' JFZ doub 176 n y C3' C2' JFZ sing 177 n y C4' C5' JFZ sing 178 n y C2' C1' JFZ doub 179 n y C5' C6' JFZ doub 180 n y C1' C6' JFZ sing 181 n y C1' O1 JFZ sing 182 n n O1 C1 JFZ sing 183 n n C5 C6 JFZ sing 184 n n C5 O5 JFZ sing 185 n n C5 C4 JFZ sing 186 n n C1 O5 JFZ sing 187 n n C1 C2 JFZ sing 188 n n C4 C3 JFZ sing 189 n n C4 O4 JFZ sing 190 n n O2 C2 JFZ sing 191 n n C2 C3 JFZ sing 192 n n C3 O3 JFZ sing 193 n n C1 H1 JFZ sing 194 n n C2 H2 JFZ sing 195 n n O2 HO2 JFZ sing 196 n n C4 H4 JFZ sing 197 n n O4 HO4 JFZ sing 198 n n C5 H5 JFZ sing 199 n n C6 H61 JFZ sing 200 n n C6 H62 JFZ sing 201 n n C6 H63 JFZ sing 202 n n C2' H10 JFZ sing 203 n n C3' H11 JFZ sing 204 n n C5' H12 JFZ sing 205 n n C6' H13 JFZ sing 206 n n C3 H3 JFZ sing 207 n n O3 HO3 JFZ sing 208 n n # _atom_sites.entry_id 6O1C _atom_sites.fract_transf_matrix[1][1] 0.011144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 JFZ A 1 401 4 JFZ LIG . J 2 JFZ B 1 401 3 JFZ LIG . K 2 JFZ C 1 401 1 JFZ LIG . L 2 JFZ D 1 401 9 JFZ LIG . M 2 JFZ E 1 401 6 JFZ LIG . N 2 JFZ F 1 401 5 JFZ LIG . O 2 JFZ G 1 401 7 JFZ LIG . P 2 JFZ H 1 401 8 JFZ LIG . Q 3 HOH A 1 501 25 HOH HOH . Q 3 HOH A 2 502 4 HOH HOH . Q 3 HOH A 3 503 85 HOH HOH . Q 3 HOH A 4 504 49 HOH HOH . Q 3 HOH A 5 505 12 HOH HOH . Q 3 HOH A 6 506 125 HOH HOH . Q 3 HOH A 7 507 52 HOH HOH . Q 3 HOH A 8 508 104 HOH HOH . Q 3 HOH A 9 509 17 HOH HOH . Q 3 HOH A 10 510 38 HOH HOH . Q 3 HOH A 11 511 55 HOH HOH . Q 3 HOH A 12 512 73 HOH HOH . Q 3 HOH A 13 513 43 HOH HOH . Q 3 HOH A 14 514 201 HOH HOH . Q 3 HOH A 15 515 753 HOH HOH . Q 3 HOH A 16 516 24 HOH HOH . Q 3 HOH A 17 517 284 HOH HOH . Q 3 HOH A 18 518 293 HOH HOH . Q 3 HOH A 19 519 22 HOH HOH . Q 3 HOH A 20 520 30 HOH HOH . Q 3 HOH A 21 521 30 HOH HOH . Q 3 HOH A 22 522 5 HOH HOH . Q 3 HOH A 23 523 221 HOH HOH . Q 3 HOH A 24 524 43 HOH HOH . Q 3 HOH A 25 525 62 HOH HOH . Q 3 HOH A 26 526 64 HOH HOH . Q 3 HOH A 27 527 396 HOH HOH . Q 3 HOH A 28 528 53 HOH HOH . Q 3 HOH A 29 529 36 HOH HOH . Q 3 HOH A 30 530 293 HOH HOH . Q 3 HOH A 31 531 58 HOH HOH . Q 3 HOH A 32 532 41 HOH HOH . Q 3 HOH A 33 533 83 HOH HOH . Q 3 HOH A 34 534 32 HOH HOH . Q 3 HOH A 35 535 579 HOH HOH . Q 3 HOH A 36 536 288 HOH HOH . Q 3 HOH A 37 537 82 HOH HOH . Q 3 HOH A 38 538 68 HOH HOH . Q 3 HOH A 39 539 38 HOH HOH . Q 3 HOH A 40 540 25 HOH HOH . R 3 HOH B 1 501 72 HOH HOH . R 3 HOH B 2 502 33 HOH HOH . R 3 HOH B 3 503 37 HOH HOH . R 3 HOH B 4 504 151 HOH HOH . R 3 HOH B 5 505 116 HOH HOH . R 3 HOH B 6 506 73 HOH HOH . R 3 HOH B 7 507 194 HOH HOH . R 3 HOH B 8 508 181 HOH HOH . R 3 HOH B 9 509 64 HOH HOH . R 3 HOH B 10 510 276 HOH HOH . R 3 HOH B 11 511 171 HOH HOH . R 3 HOH B 12 512 118 HOH HOH . R 3 HOH B 13 513 146 HOH HOH . R 3 HOH B 14 514 304 HOH HOH . R 3 HOH B 15 515 33 HOH HOH . R 3 HOH B 16 516 53 HOH HOH . R 3 HOH B 17 517 3 HOH HOH . R 3 HOH B 18 518 43 HOH HOH . R 3 HOH B 19 519 192 HOH HOH . R 3 HOH B 20 520 180 HOH HOH . R 3 HOH B 21 521 63 HOH HOH . R 3 HOH B 22 522 188 HOH HOH . R 3 HOH B 23 523 129 HOH HOH . R 3 HOH B 24 524 214 HOH HOH . R 3 HOH B 25 525 35 HOH HOH . R 3 HOH B 26 526 35 HOH HOH . R 3 HOH B 27 527 267 HOH HOH . R 3 HOH B 28 528 125 HOH HOH . R 3 HOH B 29 529 1 HOH HOH . R 3 HOH B 30 530 20 HOH HOH . R 3 HOH B 31 531 155 HOH HOH . R 3 HOH B 32 532 11 HOH HOH . R 3 HOH B 33 533 4 HOH HOH . R 3 HOH B 34 534 248 HOH HOH . R 3 HOH B 35 535 26 HOH HOH . R 3 HOH B 36 536 93 HOH HOH . R 3 HOH B 37 537 572 HOH HOH . R 3 HOH B 38 538 327 HOH HOH . S 3 HOH C 1 501 228 HOH HOH . S 3 HOH C 2 502 428 HOH HOH . S 3 HOH C 3 503 33 HOH HOH . S 3 HOH C 4 504 19 HOH HOH . S 3 HOH C 5 505 50 HOH HOH . S 3 HOH C 6 506 147 HOH HOH . S 3 HOH C 7 507 3 HOH HOH . S 3 HOH C 8 508 86 HOH HOH . S 3 HOH C 9 509 387 HOH HOH . S 3 HOH C 10 510 7 HOH HOH . S 3 HOH C 11 511 370 HOH HOH . S 3 HOH C 12 512 354 HOH HOH . S 3 HOH C 13 513 32 HOH HOH . S 3 HOH C 14 514 87 HOH HOH . S 3 HOH C 15 515 52 HOH HOH . S 3 HOH C 16 516 37 HOH HOH . S 3 HOH C 17 517 553 HOH HOH . S 3 HOH C 18 518 63 HOH HOH . S 3 HOH C 19 519 16 HOH HOH . S 3 HOH C 20 520 53 HOH HOH . S 3 HOH C 21 521 18 HOH HOH . S 3 HOH C 22 522 118 HOH HOH . S 3 HOH C 23 523 272 HOH HOH . S 3 HOH C 24 524 80 HOH HOH . S 3 HOH C 25 525 398 HOH HOH . S 3 HOH C 26 526 455 HOH HOH . S 3 HOH C 27 527 69 HOH HOH . S 3 HOH C 28 528 76 HOH HOH . S 3 HOH C 29 529 96 HOH HOH . S 3 HOH C 30 530 117 HOH HOH . S 3 HOH C 31 531 150 HOH HOH . S 3 HOH C 32 532 95 HOH HOH . S 3 HOH C 33 533 61 HOH HOH . S 3 HOH C 34 534 543 HOH HOH . S 3 HOH C 35 535 45 HOH HOH . S 3 HOH C 36 536 112 HOH HOH . S 3 HOH C 37 537 566 HOH HOH . S 3 HOH C 38 538 3 HOH HOH . S 3 HOH C 39 539 525 HOH HOH . S 3 HOH C 40 540 527 HOH HOH . S 3 HOH C 41 541 115 HOH HOH . T 3 HOH D 1 501 202 HOH HOH . T 3 HOH D 2 502 476 HOH HOH . T 3 HOH D 3 503 112 HOH HOH . T 3 HOH D 4 504 8 HOH HOH . T 3 HOH D 5 505 183 HOH HOH . T 3 HOH D 6 506 21 HOH HOH . T 3 HOH D 7 507 40 HOH HOH . T 3 HOH D 8 508 70 HOH HOH . T 3 HOH D 9 509 324 HOH HOH . T 3 HOH D 10 510 105 HOH HOH . T 3 HOH D 11 511 405 HOH HOH . T 3 HOH D 12 512 158 HOH HOH . T 3 HOH D 13 513 40 HOH HOH . T 3 HOH D 14 514 167 HOH HOH . T 3 HOH D 15 515 128 HOH HOH . T 3 HOH D 16 516 211 HOH HOH . T 3 HOH D 17 517 21 HOH HOH . T 3 HOH D 18 518 620 HOH HOH . T 3 HOH D 19 519 58 HOH HOH . T 3 HOH D 20 520 46 HOH HOH . T 3 HOH D 21 521 49 HOH HOH . T 3 HOH D 22 522 9 HOH HOH . T 3 HOH D 23 523 96 HOH HOH . T 3 HOH D 24 524 5 HOH HOH . T 3 HOH D 25 525 173 HOH HOH . T 3 HOH D 26 526 409 HOH HOH . T 3 HOH D 27 527 667 HOH HOH . T 3 HOH D 28 528 86 HOH HOH . T 3 HOH D 29 529 85 HOH HOH . T 3 HOH D 30 530 58 HOH HOH . T 3 HOH D 31 531 49 HOH HOH . T 3 HOH D 32 532 602 HOH HOH . T 3 HOH D 33 533 661 HOH HOH . U 3 HOH E 1 501 429 HOH HOH . U 3 HOH E 2 502 170 HOH HOH . U 3 HOH E 3 503 289 HOH HOH . U 3 HOH E 4 504 345 HOH HOH . U 3 HOH E 5 505 27 HOH HOH . U 3 HOH E 6 506 22 HOH HOH . U 3 HOH E 7 507 38 HOH HOH . U 3 HOH E 8 508 36 HOH HOH . U 3 HOH E 9 509 55 HOH HOH . U 3 HOH E 10 510 74 HOH HOH . U 3 HOH E 11 511 26 HOH HOH . U 3 HOH E 12 512 6 HOH HOH . U 3 HOH E 13 513 17 HOH HOH . U 3 HOH E 14 514 36 HOH HOH . U 3 HOH E 15 515 262 HOH HOH . U 3 HOH E 16 516 66 HOH HOH . U 3 HOH E 17 517 84 HOH HOH . U 3 HOH E 18 518 15 HOH HOH . U 3 HOH E 19 519 153 HOH HOH . U 3 HOH E 20 520 66 HOH HOH . U 3 HOH E 21 521 251 HOH HOH . U 3 HOH E 22 522 68 HOH HOH . U 3 HOH E 23 523 567 HOH HOH . U 3 HOH E 24 524 562 HOH HOH . V 3 HOH F 1 501 24 HOH HOH . V 3 HOH F 2 502 98 HOH HOH . V 3 HOH F 3 503 72 HOH HOH . V 3 HOH F 4 504 40 HOH HOH . V 3 HOH F 5 505 485 HOH HOH . V 3 HOH F 6 506 113 HOH HOH . V 3 HOH F 7 507 149 HOH HOH . V 3 HOH F 8 508 41 HOH HOH . V 3 HOH F 9 509 34 HOH HOH . V 3 HOH F 10 510 7 HOH HOH . V 3 HOH F 11 511 64 HOH HOH . V 3 HOH F 12 512 505 HOH HOH . V 3 HOH F 13 513 144 HOH HOH . V 3 HOH F 14 514 179 HOH HOH . V 3 HOH F 15 515 17 HOH HOH . V 3 HOH F 16 516 116 HOH HOH . V 3 HOH F 17 517 58 HOH HOH . V 3 HOH F 18 518 99 HOH HOH . V 3 HOH F 19 519 742 HOH HOH . W 3 HOH G 1 501 13 HOH HOH . W 3 HOH G 2 502 424 HOH HOH . W 3 HOH G 3 503 65 HOH HOH . W 3 HOH G 4 504 1 HOH HOH . W 3 HOH G 5 505 193 HOH HOH . W 3 HOH G 6 506 119 HOH HOH . W 3 HOH G 7 507 181 HOH HOH . W 3 HOH G 8 508 594 HOH HOH . W 3 HOH G 9 509 281 HOH HOH . W 3 HOH G 10 510 159 HOH HOH . W 3 HOH G 11 511 90 HOH HOH . W 3 HOH G 12 512 52 HOH HOH . W 3 HOH G 13 513 45 HOH HOH . W 3 HOH G 14 514 56 HOH HOH . W 3 HOH G 15 515 31 HOH HOH . W 3 HOH G 16 516 139 HOH HOH . W 3 HOH G 17 517 265 HOH HOH . W 3 HOH G 18 518 341 HOH HOH . W 3 HOH G 19 519 177 HOH HOH . W 3 HOH G 20 520 61 HOH HOH . W 3 HOH G 21 521 79 HOH HOH . X 3 HOH H 1 501 181 HOH HOH . X 3 HOH H 2 502 561 HOH HOH . X 3 HOH H 3 503 114 HOH HOH . X 3 HOH H 4 504 141 HOH HOH . X 3 HOH H 5 505 44 HOH HOH . X 3 HOH H 6 506 90 HOH HOH . X 3 HOH H 7 507 23 HOH HOH . X 3 HOH H 8 508 743 HOH HOH . X 3 HOH H 9 509 21 HOH HOH . X 3 HOH H 10 510 308 HOH HOH . X 3 HOH H 11 511 394 HOH HOH . X 3 HOH H 12 512 42 HOH HOH . X 3 HOH H 13 513 40 HOH HOH . X 3 HOH H 14 514 141 HOH HOH . X 3 HOH H 15 515 94 HOH HOH . X 3 HOH H 16 516 585 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 JFZ . . . I 2 1.131 -46.677 -12.048 1 57.03 ? C1 JFZ 401 A 1 HETATM 2 C C2 JFZ . . . I 2 0.263 -46.291 -10.855 1 56.63 ? C2 JFZ 401 A 1 HETATM 3 O O2 JFZ . . . I 2 -1.06 -46.075 -11.329 1 58.26 ? O2 JFZ 401 A 1 HETATM 4 C C3 JFZ . . . I 2 0.341 -47.456 -9.791 1 54.29 ? C3 JFZ 401 A 1 HETATM 5 O O3 JFZ . . . I 2 -0.569 -47.228 -8.711 1 54.96 ? O3 JFZ 401 A 1 HETATM 6 C C4 JFZ . . . I 2 1.846 -47.57 -9.308 1 50.91 ? C4 JFZ 401 A 1 HETATM 7 O O4 JFZ . . . I 2 2.268 -46.397 -8.76 1 50.44 ? O4 JFZ 401 A 1 HETATM 8 C C5 JFZ . . . I 2 2.75 -47.921 -10.538 1 51.38 ? C5 JFZ 401 A 1 HETATM 9 C C6 JFZ . . . I 2 4.241 -47.874 -10.062 1 50.44 ? C6 JFZ 401 A 1 HETATM 10 O O5 JFZ . . . I 2 2.482 -47.057 -11.657 1 53.1 ? O5 JFZ 401 A 1 HETATM 11 O O1 JFZ . . . I 2 0.442 -47.676 -12.88 1 64 ? O1 JFZ 401 A 1 HETATM 12 C C1' JFZ . . . I 2 1.374 -48.313 -13.691 1 74.92 ? C1' JFZ 401 A 1 HETATM 13 C C2' JFZ . . . I 2 1.836 -49.621 -13.316 1 81.38 ? C2' JFZ 401 A 1 HETATM 14 C C3' JFZ . . . I 2 2.828 -50.295 -14.074 1 82.45 ? C3' JFZ 401 A 1 HETATM 15 C C4' JFZ . . . I 2 3.384 -49.683 -15.198 1 83.88 ? C4' JFZ 401 A 1 HETATM 16 C C5' JFZ . . . I 2 2.969 -48.353 -15.604 1 80.35 ? C5' JFZ 401 A 1 HETATM 17 C C6' JFZ . . . I 2 1.973 -47.672 -14.84 1 75.91 ? C6' JFZ 401 A 1 HETATM 18 N N1' JFZ . . . I 2 4.484 -50.581 -15.889 1 90.11 ? N1' JFZ 401 A 1 HETATM 19 O O2' JFZ . . . I 2 5.398 -51.012 -15.298 1 88.63 ? O2' JFZ 401 A 1 HETATM 20 O O3' JFZ . . . I 2 4.222 -50.727 -17.079 1 91.4 ? O3' JFZ 401 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 187 _model_server_stats.create_model_time_ms 198 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #