data_6O1E # _model_server_result.job_id A3p0gHBO2Onc4TrJfkHEpw _model_server_result.datetime_utc '2025-08-21 16:49:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6O1E # _exptl.entry_id 6O1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O1E _cell.length_a 119.51 _cell.length_b 119.51 _cell.length_c 76.88 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 179.265 103.498696 25.626667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 39 A ASN 39 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc2 A SG CYS 413 A CYS 413 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc3 A SG CYS 416 A CYS 416 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 A SG CYS 435 A CYS 435 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 A SG CYS 446 A CYS 446 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc6 C MG MG . A MG 502 1_555 D O1A ANP . A ANP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc7 C MG MG . A MG 502 1_555 D O1G ANP . A ANP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc8 C MG MG . A MG 502 1_555 D O1B ANP . A ANP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc9 C MG MG . A MG 502 1_555 E O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc10 C MG MG . A MG 502 1_555 E O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6O1E _atom_sites.fract_transf_matrix[1][1] 0.008368 _atom_sites.fract_transf_matrix[1][2] 0.004831 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009662 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 1 ZN ZN . C 3 MG A 1 502 1 MG MG . D 4 ANP A 1 503 1 ANP ANP . E 5 HOH A 1 601 55 HOH HOH . E 5 HOH A 2 602 24 HOH HOH . E 5 HOH A 3 603 9 HOH HOH . E 5 HOH A 4 604 22 HOH HOH . E 5 HOH A 5 605 21 HOH HOH . E 5 HOH A 6 606 4 HOH HOH . E 5 HOH A 7 607 16 HOH HOH . E 5 HOH A 8 608 11 HOH HOH . E 5 HOH A 9 609 23 HOH HOH . E 5 HOH A 10 610 50 HOH HOH . E 5 HOH A 11 611 6 HOH HOH . E 5 HOH A 12 612 40 HOH HOH . E 5 HOH A 13 613 33 HOH HOH . E 5 HOH A 14 614 28 HOH HOH . E 5 HOH A 15 615 3 HOH HOH . E 5 HOH A 16 616 34 HOH HOH . E 5 HOH A 17 617 7 HOH HOH . E 5 HOH A 18 618 1 HOH HOH . E 5 HOH A 19 619 8 HOH HOH . E 5 HOH A 20 620 43 HOH HOH . E 5 HOH A 21 621 45 HOH HOH . E 5 HOH A 22 622 5 HOH HOH . E 5 HOH A 23 623 19 HOH HOH . E 5 HOH A 24 624 37 HOH HOH . E 5 HOH A 25 625 15 HOH HOH . E 5 HOH A 26 626 36 HOH HOH . E 5 HOH A 27 627 2 HOH HOH . E 5 HOH A 28 628 51 HOH HOH . E 5 HOH A 29 629 38 HOH HOH . E 5 HOH A 30 630 49 HOH HOH . E 5 HOH A 31 631 29 HOH HOH . E 5 HOH A 32 632 12 HOH HOH . E 5 HOH A 33 633 47 HOH HOH . E 5 HOH A 34 634 41 HOH HOH . E 5 HOH A 35 635 13 HOH HOH . E 5 HOH A 36 636 53 HOH HOH . E 5 HOH A 37 637 35 HOH HOH . E 5 HOH A 38 638 31 HOH HOH . E 5 HOH A 39 639 32 HOH HOH . E 5 HOH A 40 640 10 HOH HOH . E 5 HOH A 41 641 26 HOH HOH . E 5 HOH A 42 642 20 HOH HOH . E 5 HOH A 43 643 48 HOH HOH . E 5 HOH A 44 644 44 HOH HOH . E 5 HOH A 45 645 27 HOH HOH . E 5 HOH A 46 646 42 HOH HOH . E 5 HOH A 47 647 56 HOH HOH . E 5 HOH A 48 648 46 HOH HOH . E 5 HOH A 49 649 39 HOH HOH . E 5 HOH A 50 650 14 HOH HOH . E 5 HOH A 51 651 57 HOH HOH . E 5 HOH A 52 652 18 HOH HOH . E 5 HOH A 53 653 52 HOH HOH . E 5 HOH A 54 654 17 HOH HOH . E 5 HOH A 55 655 58 HOH HOH . E 5 HOH A 56 656 25 HOH HOH . E 5 HOH A 57 657 30 HOH HOH . E 5 HOH A 58 658 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 4 10.557 166.924 9.43 1 53.1 ? PG ANP 503 A 1 HETATM 2 O O1G ANP . . . D 4 10.632 166.461 7.995 1 56.42 ? O1G ANP 503 A 1 HETATM 3 O O2G ANP . . . D 4 11.517 168.071 9.675 1 57.03 ? O2G ANP 503 A 1 HETATM 4 O O3G ANP . . . D 4 10.91 165.711 10.272 1 64.2 ? O3G ANP 503 A 1 HETATM 5 P PB ANP . . . D 4 8.037 168.268 8.677 1 54.3 ? PB ANP 503 A 1 HETATM 6 O O1B ANP . . . D 4 7.863 167.354 7.494 1 48.87 ? O1B ANP 503 A 1 HETATM 7 O O2B ANP . . . D 4 6.721 168.697 9.262 1 68.39 ? O2B ANP 503 A 1 HETATM 8 N N3B ANP . . . D 4 8.993 167.487 9.843 1 62.95 ? N3B ANP 503 A 1 HETATM 9 P PA ANP . . . D 4 9.336 169.945 6.683 1 55.94 ? PA ANP 503 A 1 HETATM 10 O O1A ANP . . . D 4 9.847 168.742 5.9 1 50.38 ? O1A ANP 503 A 1 HETATM 11 O O2A ANP . . . D 4 10.307 171.104 6.723 1 55.88 ? O2A ANP 503 A 1 HETATM 12 O O3A ANP . . . D 4 8.945 169.583 8.248 1 58.51 ? O3A ANP 503 A 1 HETATM 13 O O5' ANP . . . D 4 7.925 170.458 5.98 1 55.99 ? O5' ANP 503 A 1 HETATM 14 C C5' ANP . . . D 4 7.326 171.526 6.664 1 59.68 ? C5' ANP 503 A 1 HETATM 15 C C4' ANP . . . D 4 5.829 171.557 6.231 1 66.43 ? C4' ANP 503 A 1 HETATM 16 O O4' ANP . . . D 4 5.737 171.83 4.956 1 63.91 ? O4' ANP 503 A 1 HETATM 17 C C3' ANP . . . D 4 5.3 170.135 6.375 1 66.62 ? C3' ANP 503 A 1 HETATM 18 O O3' ANP . . . D 4 4.846 169.997 7.66 1 68.6 ? O3' ANP 503 A 1 HETATM 19 C C2' ANP . . . D 4 4.184 170.096 5.299 1 66.92 ? C2' ANP 503 A 1 HETATM 20 O O2' ANP . . . D 4 2.908 170.479 5.993 1 79.47 ? O2' ANP 503 A 1 HETATM 21 C C1' ANP . . . D 4 4.509 170.975 4.37 1 61.03 ? C1' ANP 503 A 1 HETATM 22 N N9 ANP . . . D 4 5.008 170.361 3.14 1 61.65 ? N9 ANP 503 A 1 HETATM 23 C C8 ANP . . . D 4 6.281 169.998 2.875 1 62.11 ? C8 ANP 503 A 1 HETATM 24 N N7 ANP . . . D 4 6.335 169.471 1.635 1 57.19 ? N7 ANP 503 A 1 HETATM 25 C C5 ANP . . . D 4 5.08 169.529 1.13 1 64.78 ? C5 ANP 503 A 1 HETATM 26 C C6 ANP . . . D 4 4.556 169.136 -0.089 1 68.53 ? C6 ANP 503 A 1 HETATM 27 N N6 ANP . . . D 4 5.172 168.512 -1.24 1 64.91 ? N6 ANP 503 A 1 HETATM 28 N N1 ANP . . . D 4 3.266 169.289 -0.363 1 70.02 ? N1 ANP 503 A 1 HETATM 29 C C2 ANP . . . D 4 2.453 169.862 0.568 1 75.52 ? C2 ANP 503 A 1 HETATM 30 N N3 ANP . . . D 4 2.946 170.236 1.773 1 65.06 ? N3 ANP 503 A 1 HETATM 31 C C4 ANP . . . D 4 4.265 170.077 2.049 1 60.21 ? C4 ANP 503 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #