data_6O2P # _model_server_result.job_id IfXqIqrSRxZW9re_JY2Hig _model_server_result.datetime_utc '2024-11-26 23:26:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1503}' # _entry.id 6O2P # _exptl.entry_id 6O2P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O2P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 465 A THR 465 1_555 C MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc2 A OE1 GLN 493 A GLN 493 1_555 C MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 A OG SER 1251 A SER 1251 1_555 D MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 A OE1 GLN 1291 A GLN 1291 1_555 D MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc5 C MG MG . A MG 1501 1_555 E O3G ATP . A ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc6 C MG MG . A MG 1501 1_555 E O2B ATP . A ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc7 D MG MG . A MG 1502 1_555 F O3G ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc8 D MG MG . A MG 1502 1_555 F O2B ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc9 D MG MG . A MG 1502 1_555 F O3B ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 257 n n PG O2G ATP sing 258 n n PG O3G ATP sing 259 n n PG O3B ATP sing 260 n n O2G HOG2 ATP sing 261 n n O3G HOG3 ATP sing 262 n n PB O1B ATP doub 263 n n PB O2B ATP sing 264 n n PB O3B ATP sing 265 n n PB O3A ATP sing 266 n n O2B HOB2 ATP sing 267 n n PA O1A ATP doub 268 n n PA O2A ATP sing 269 n n PA O3A ATP sing 270 n n PA O5' ATP sing 271 n n O2A HOA2 ATP sing 272 n n O5' C5' ATP sing 273 n n C5' C4' ATP sing 274 n n C5' "H5'1" ATP sing 275 n n C5' "H5'2" ATP sing 276 n n C4' O4' ATP sing 277 n n C4' C3' ATP sing 278 n n C4' H4' ATP sing 279 n n O4' C1' ATP sing 280 n n C3' O3' ATP sing 281 n n C3' C2' ATP sing 282 n n C3' H3' ATP sing 283 n n O3' HO3' ATP sing 284 n n C2' O2' ATP sing 285 n n C2' C1' ATP sing 286 n n C2' H2' ATP sing 287 n n O2' HO2' ATP sing 288 n n C1' N9 ATP sing 289 n n C1' H1' ATP sing 290 n n N9 C8 ATP sing 291 n y N9 C4 ATP sing 292 n y C8 N7 ATP doub 293 n y C8 H8 ATP sing 294 n n N7 C5 ATP sing 295 n y C5 C6 ATP sing 296 n y C5 C4 ATP doub 297 n y C6 N6 ATP sing 298 n n C6 N1 ATP doub 299 n y N6 HN61 ATP sing 300 n n N6 HN62 ATP sing 301 n n N1 C2 ATP sing 302 n y C2 N3 ATP doub 303 n y C2 H2 ATP sing 304 n n N3 C4 ATP sing 305 n y # _atom_sites.entry_id 6O2P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1501 1 MG MG . D 3 MG A 1 1502 2 MG MG . E 4 ATP A 1 1503 1 ATP ATP . F 4 ATP A 1 1504 2 ATP ATP . G 5 POV A 1 1505 1 POV POV . H 5 POV A 1 1506 2 POV POV . I 5 POV A 1 1507 3 POV POV . J 5 POV A 1 1508 4 POV POV . K 5 POV A 1 1509 5 POV POV . L 5 POV A 1 1510 6 POV POV . M 6 AJP A 1 1511 7 AJP AJP . N 7 VX7 A 1 1512 1501 VX7 VX7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 4 130.257 128.25 141.178 1 183.15 ? PG ATP 1503 A 1 HETATM 2 O O1G ATP . . . E 4 129.493 127.271 140.323 1 182.88 ? O1G ATP 1503 A 1 HETATM 3 O O2G ATP . . . E 4 129.953 129.682 140.831 1 193.32 ? O2G ATP 1503 A 1 HETATM 4 O O3G ATP . . . E 4 131.734 127.957 141.204 1 184.4 ? O3G ATP 1503 A 1 HETATM 5 P PB ATP . . . E 4 130.044 126.964 143.825 1 190.5 ? PB ATP 1503 A 1 HETATM 6 O O1B ATP . . . E 4 129.077 125.836 143.675 1 197.62 ? O1B ATP 1503 A 1 HETATM 7 O O2B ATP . . . E 4 131.51 126.677 143.856 1 188.57 ? O2B ATP 1503 A 1 HETATM 8 O O3B ATP . . . E 4 129.74 128.057 142.696 1 185.26 ? O3B ATP 1503 A 1 HETATM 9 P PA ATP . . . E 4 130.601 128.252 146.359 1 183.96 ? PA ATP 1503 A 1 HETATM 10 O O1A ATP . . . E 4 131.019 127.051 147.138 1 188.23 ? O1A ATP 1503 A 1 HETATM 11 O O2A ATP . . . E 4 131.665 129.139 145.8 1 194.82 ? O2A ATP 1503 A 1 HETATM 12 O O3A ATP . . . E 4 129.667 127.777 145.15 1 186.95 ? O3A ATP 1503 A 1 HETATM 13 O O5' ATP . . . E 4 129.581 129.131 147.23 1 182.62 ? O5' ATP 1503 A 1 HETATM 14 C C5' ATP . . . E 4 128.389 128.524 147.787 1 180.04 ? C5' ATP 1503 A 1 HETATM 15 C C4' ATP . . . E 4 127.613 129.57 148.551 1 182.97 ? C4' ATP 1503 A 1 HETATM 16 O O4' ATP . . . E 4 128.448 130.09 149.619 1 184.31 ? O4' ATP 1503 A 1 HETATM 17 C C3' ATP . . . E 4 127.157 130.793 147.742 1 182.83 ? C3' ATP 1503 A 1 HETATM 18 O O3' ATP . . . E 4 125.849 131.196 148.125 1 186.33 ? O3' ATP 1503 A 1 HETATM 19 C C2' ATP . . . E 4 128.214 131.85 148.078 1 185.22 ? C2' ATP 1503 A 1 HETATM 20 O O2' ATP . . . E 4 127.716 133.167 147.981 1 184.25 ? O2' ATP 1503 A 1 HETATM 21 C C1' ATP . . . E 4 128.575 131.489 149.516 1 182.33 ? C1' ATP 1503 A 1 HETATM 22 N N9 ATP . . . E 4 129.947 131.84 149.898 1 179.51 ? N9 ATP 1503 A 1 HETATM 23 C C8 ATP . . . E 4 131.109 131.456 149.27 1 177.33 ? C8 ATP 1503 A 1 HETATM 24 N N7 ATP . . . E 4 132.183 131.935 149.854 1 175.7 ? N7 ATP 1503 A 1 HETATM 25 C C5 ATP . . . E 4 131.7 132.665 150.933 1 175.38 ? C5 ATP 1503 A 1 HETATM 26 C C6 ATP . . . E 4 132.342 133.41 151.944 1 171.56 ? C6 ATP 1503 A 1 HETATM 27 N N6 ATP . . . E 4 133.661 133.548 152.036 1 164.49 ? N6 ATP 1503 A 1 HETATM 28 N N1 ATP . . . E 4 131.555 134.012 152.871 1 175.64 ? N1 ATP 1503 A 1 HETATM 29 C C2 ATP . . . E 4 130.224 133.87 152.773 1 182.98 ? C2 ATP 1503 A 1 HETATM 30 N N3 ATP . . . E 4 129.513 133.198 151.869 1 181.67 ? N3 ATP 1503 A 1 HETATM 31 C C4 ATP . . . E 4 130.32 132.61 150.968 1 179.22 ? C4 ATP 1503 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #