data_6O2P # _model_server_result.job_id JtxpH6-OCTPEE0Zl19DhsQ _model_server_result.datetime_utc '2024-11-26 23:45:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1504}' # _entry.id 6O2P # _exptl.entry_id 6O2P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O2P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 465 A THR 465 1_555 C MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc2 A OE1 GLN 493 A GLN 493 1_555 C MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 A OG SER 1251 A SER 1251 1_555 D MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 A OE1 GLN 1291 A GLN 1291 1_555 D MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc5 C MG MG . A MG 1501 1_555 E O3G ATP . A ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc6 C MG MG . A MG 1501 1_555 E O2B ATP . A ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc7 D MG MG . A MG 1502 1_555 F O3G ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc8 D MG MG . A MG 1502 1_555 F O2B ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc9 D MG MG . A MG 1502 1_555 F O3B ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 257 n n PG O2G ATP sing 258 n n PG O3G ATP sing 259 n n PG O3B ATP sing 260 n n O2G HOG2 ATP sing 261 n n O3G HOG3 ATP sing 262 n n PB O1B ATP doub 263 n n PB O2B ATP sing 264 n n PB O3B ATP sing 265 n n PB O3A ATP sing 266 n n O2B HOB2 ATP sing 267 n n PA O1A ATP doub 268 n n PA O2A ATP sing 269 n n PA O3A ATP sing 270 n n PA O5' ATP sing 271 n n O2A HOA2 ATP sing 272 n n O5' C5' ATP sing 273 n n C5' C4' ATP sing 274 n n C5' "H5'1" ATP sing 275 n n C5' "H5'2" ATP sing 276 n n C4' O4' ATP sing 277 n n C4' C3' ATP sing 278 n n C4' H4' ATP sing 279 n n O4' C1' ATP sing 280 n n C3' O3' ATP sing 281 n n C3' C2' ATP sing 282 n n C3' H3' ATP sing 283 n n O3' HO3' ATP sing 284 n n C2' O2' ATP sing 285 n n C2' C1' ATP sing 286 n n C2' H2' ATP sing 287 n n O2' HO2' ATP sing 288 n n C1' N9 ATP sing 289 n n C1' H1' ATP sing 290 n n N9 C8 ATP sing 291 n y N9 C4 ATP sing 292 n y C8 N7 ATP doub 293 n y C8 H8 ATP sing 294 n n N7 C5 ATP sing 295 n y C5 C6 ATP sing 296 n y C5 C4 ATP doub 297 n y C6 N6 ATP sing 298 n n C6 N1 ATP doub 299 n y N6 HN61 ATP sing 300 n n N6 HN62 ATP sing 301 n n N1 C2 ATP sing 302 n y C2 N3 ATP doub 303 n y C2 H2 ATP sing 304 n n N3 C4 ATP sing 305 n y # _atom_sites.entry_id 6O2P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1501 1 MG MG . D 3 MG A 1 1502 2 MG MG . E 4 ATP A 1 1503 1 ATP ATP . F 4 ATP A 1 1504 2 ATP ATP . G 5 POV A 1 1505 1 POV POV . H 5 POV A 1 1506 2 POV POV . I 5 POV A 1 1507 3 POV POV . J 5 POV A 1 1508 4 POV POV . K 5 POV A 1 1509 5 POV POV . L 5 POV A 1 1510 6 POV POV . M 6 AJP A 1 1511 7 AJP AJP . N 7 VX7 A 1 1512 1501 VX7 VX7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 4 141.448 133.186 125.982 1 189.61 ? PG ATP 1504 A 1 HETATM 2 O O1G ATP . . . F 4 141.159 131.858 125.331 1 185.09 ? O1G ATP 1504 A 1 HETATM 3 O O2G ATP . . . F 4 142.127 133.041 127.322 1 195.11 ? O2G ATP 1504 A 1 HETATM 4 O O3G ATP . . . F 4 140.232 134.078 126.039 1 195.33 ? O3G ATP 1504 A 1 HETATM 5 P PB ATP . . . F 4 142.325 134.928 123.787 1 179.16 ? PB ATP 1504 A 1 HETATM 6 O O1B ATP . . . F 4 142.056 134.112 122.566 1 182.05 ? O1B ATP 1504 A 1 HETATM 7 O O2B ATP . . . F 4 141.373 136.01 124.169 1 184.72 ? O2B ATP 1504 A 1 HETATM 8 O O3B ATP . . . F 4 142.511 133.938 125.031 1 181.11 ? O3B ATP 1504 A 1 HETATM 9 P PA ATP . . . F 4 144.334 137.009 124.105 1 184.21 ? PA ATP 1504 A 1 HETATM 10 O O1A ATP . . . F 4 143.987 137.995 123.041 1 185.95 ? O1A ATP 1504 A 1 HETATM 11 O O2A ATP . . . F 4 143.869 137.288 125.495 1 195.69 ? O2A ATP 1504 A 1 HETATM 12 O O3A ATP . . . F 4 143.789 135.563 123.675 1 182.5 ? O3A ATP 1504 A 1 HETATM 13 O O5' ATP . . . F 4 145.918 136.768 124.113 1 183.8 ? O5' ATP 1504 A 1 HETATM 14 C C5' ATP . . . F 4 146.595 136.353 122.902 1 184.76 ? C5' ATP 1504 A 1 HETATM 15 C C4' ATP . . . F 4 148.088 136.38 123.128 1 188.24 ? C4' ATP 1504 A 1 HETATM 16 O O4' ATP . . . F 4 148.544 137.756 123.136 1 188 ? O4' ATP 1504 A 1 HETATM 17 C C3' ATP . . . F 4 148.59 135.799 124.455 1 190.57 ? C3' ATP 1504 A 1 HETATM 18 O O3' ATP . . . F 4 148.774 134.394 124.345 1 194.57 ? O3' ATP 1504 A 1 HETATM 19 C C2' ATP . . . F 4 149.91 136.549 124.655 1 190.92 ? C2' ATP 1504 A 1 HETATM 20 O O2' ATP . . . F 4 150.99 135.936 123.982 1 196.98 ? O2' ATP 1504 A 1 HETATM 21 C C1' ATP . . . F 4 149.598 137.922 124.06 1 188.59 ? C1' ATP 1504 A 1 HETATM 22 N N9 ATP . . . F 4 149.186 138.921 125.05 1 185.09 ? N9 ATP 1504 A 1 HETATM 23 C C8 ATP . . . F 4 147.955 139.052 125.652 1 183.71 ? C8 ATP 1504 A 1 HETATM 24 N N7 ATP . . . F 4 147.909 140.057 126.497 1 182.48 ? N7 ATP 1504 A 1 HETATM 25 C C5 ATP . . . F 4 149.18 140.617 126.446 1 183.63 ? C5 ATP 1504 A 1 HETATM 26 C C6 ATP . . . F 4 149.768 141.71 127.114 1 183.45 ? C6 ATP 1504 A 1 HETATM 27 N N6 ATP . . . F 4 149.124 142.469 127.996 1 182.45 ? N6 ATP 1504 A 1 HETATM 28 N N1 ATP . . . F 4 151.064 141.994 126.83 1 183.66 ? N1 ATP 1504 A 1 HETATM 29 C C2 ATP . . . F 4 151.707 141.226 125.938 1 183.02 ? C2 ATP 1504 A 1 HETATM 30 N N3 ATP . . . F 4 151.258 140.176 125.251 1 182.84 ? N3 ATP 1504 A 1 HETATM 31 C C4 ATP . . . F 4 149.973 139.921 125.556 1 183.18 ? C4 ATP 1504 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #