data_6O2W # _model_server_result.job_id Y0ljTmT8b0JsAbKoGR0-EQ _model_server_result.datetime_utc '2024-12-23 05:17:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6O2W # _exptl.entry_id 6O2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.58 _cell.angle_beta 86.03 _cell.angle_gamma 89.79 _cell.entry_id 6O2W _cell.length_a 24.91 _cell.length_b 30.79 _cell.length_c 76.14 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 66 1_555 A SG CYS 44 A CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 54 A CYS 83 1_555 A SG CYS 68 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 69 A CYS 98 1_555 B SG CYS 127 B CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 85 A CYS 114 1_555 A SG CYS 101 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 127 A CYS 156 1_555 B SG CYS 69 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 B SG CYS 37 B CYS 66 1_555 B SG CYS 44 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 B SG CYS 54 B CYS 83 1_555 B SG CYS 68 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf8 B SG CYS 85 B CYS 114 1_555 B SG CYS 101 B CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6O2W _atom_sites.fract_transf_matrix[1][1] 0.040145 _atom_sites.fract_transf_matrix[1][2] -0.000147 _atom_sites.fract_transf_matrix[1][3] -0.002783 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032478 _atom_sites.fract_transf_matrix[2][3] -0.000799 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 201 1 GOL GOL . D 3 HOH A 1 201 26 HOH HOH . D 3 HOH A 2 202 21 HOH HOH . D 3 HOH A 3 203 8 HOH HOH . D 3 HOH A 4 204 23 HOH HOH . D 3 HOH A 5 205 2 HOH HOH . D 3 HOH A 6 206 48 HOH HOH . D 3 HOH A 7 207 3 HOH HOH . D 3 HOH A 8 208 55 HOH HOH . D 3 HOH A 9 209 36 HOH HOH . D 3 HOH A 10 210 83 HOH HOH . D 3 HOH A 11 211 37 HOH HOH . D 3 HOH A 12 212 64 HOH HOH . D 3 HOH A 13 213 20 HOH HOH . D 3 HOH A 14 214 4 HOH HOH . D 3 HOH A 15 215 13 HOH HOH . D 3 HOH A 16 216 62 HOH HOH . D 3 HOH A 17 217 22 HOH HOH . D 3 HOH A 18 218 82 HOH HOH . D 3 HOH A 19 219 11 HOH HOH . D 3 HOH A 20 220 52 HOH HOH . D 3 HOH A 21 221 27 HOH HOH . D 3 HOH A 22 222 18 HOH HOH . D 3 HOH A 23 223 9 HOH HOH . D 3 HOH A 24 224 46 HOH HOH . D 3 HOH A 25 225 65 HOH HOH . D 3 HOH A 26 226 30 HOH HOH . D 3 HOH A 27 227 78 HOH HOH . D 3 HOH A 28 228 17 HOH HOH . D 3 HOH A 29 229 50 HOH HOH . D 3 HOH A 30 230 79 HOH HOH . D 3 HOH A 31 231 90 HOH HOH . D 3 HOH A 32 232 89 HOH HOH . D 3 HOH A 33 233 24 HOH HOH . D 3 HOH A 34 234 81 HOH HOH . D 3 HOH A 35 235 93 HOH HOH . D 3 HOH A 36 236 86 HOH HOH . D 3 HOH A 37 237 54 HOH HOH . E 3 HOH B 1 301 15 HOH HOH . E 3 HOH B 2 302 70 HOH HOH . E 3 HOH B 3 303 66 HOH HOH . E 3 HOH B 4 304 12 HOH HOH . E 3 HOH B 5 305 58 HOH HOH . E 3 HOH B 6 306 32 HOH HOH . E 3 HOH B 7 307 43 HOH HOH . E 3 HOH B 8 308 34 HOH HOH . E 3 HOH B 9 309 42 HOH HOH . E 3 HOH B 10 310 31 HOH HOH . E 3 HOH B 11 311 51 HOH HOH . E 3 HOH B 12 312 68 HOH HOH . E 3 HOH B 13 313 77 HOH HOH . E 3 HOH B 14 314 53 HOH HOH . E 3 HOH B 15 315 25 HOH HOH . E 3 HOH B 16 316 16 HOH HOH . E 3 HOH B 17 317 7 HOH HOH . E 3 HOH B 18 318 5 HOH HOH . E 3 HOH B 19 319 10 HOH HOH . E 3 HOH B 20 320 19 HOH HOH . E 3 HOH B 21 321 67 HOH HOH . E 3 HOH B 22 322 88 HOH HOH . E 3 HOH B 23 323 33 HOH HOH . E 3 HOH B 24 324 72 HOH HOH . E 3 HOH B 25 325 6 HOH HOH . E 3 HOH B 26 326 28 HOH HOH . E 3 HOH B 27 327 39 HOH HOH . E 3 HOH B 28 328 38 HOH HOH . E 3 HOH B 29 329 41 HOH HOH . E 3 HOH B 30 330 80 HOH HOH . E 3 HOH B 31 331 1 HOH HOH . E 3 HOH B 32 332 74 HOH HOH . E 3 HOH B 33 333 29 HOH HOH . E 3 HOH B 34 334 47 HOH HOH . E 3 HOH B 35 335 44 HOH HOH . E 3 HOH B 36 336 76 HOH HOH . E 3 HOH B 37 337 35 HOH HOH . E 3 HOH B 38 338 91 HOH HOH . E 3 HOH B 39 339 59 HOH HOH . E 3 HOH B 40 340 40 HOH HOH . E 3 HOH B 41 341 45 HOH HOH . E 3 HOH B 42 342 56 HOH HOH . E 3 HOH B 43 343 75 HOH HOH . E 3 HOH B 44 344 49 HOH HOH . E 3 HOH B 45 345 87 HOH HOH . E 3 HOH B 46 346 61 HOH HOH . E 3 HOH B 47 347 71 HOH HOH . E 3 HOH B 48 348 14 HOH HOH . E 3 HOH B 49 349 69 HOH HOH . E 3 HOH B 50 350 57 HOH HOH . E 3 HOH B 51 351 92 HOH HOH . E 3 HOH B 52 352 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 86.065 -78.007 -110.393 1 60.52 ? C1 GOL 201 B 1 HETATM 2 O O1 GOL . . . C 2 85.076 -77.285 -111.1 1 56.05 ? O1 GOL 201 B 1 HETATM 3 C C2 GOL . . . C 2 86.598 -77.174 -109.233 1 61.42 ? C2 GOL 201 B 1 HETATM 4 O O2 GOL . . . C 2 88.005 -77.253 -109.245 1 63.15 ? O2 GOL 201 B 1 HETATM 5 C C3 GOL . . . C 2 86.089 -77.731 -107.903 1 60.6 ? C3 GOL 201 B 1 HETATM 6 O O3 GOL . . . C 2 84.753 -78.199 -108.001 1 51.55 ? O3 GOL 201 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #