data_6O2Y
#
_model_server_result.job_id            yrTsalmj1yY_POBXQEAMHA 
_model_server_result.datetime_utc      '2025-01-12 03:58:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o2y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    6O2Y 
#
_exptl.entry_id    6O2Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.52 
_cell.angle_gamma         90 
_cell.entry_id            6O2Y 
_cell.length_a            165.679 
_cell.length_b            63.496 
_cell.length_c            143.598 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O2Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,K,L 1 1 
C,I,J,M 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
? 3 J N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 286 n n 
PA O2A NAP sing 287 n n 
PA O5B NAP sing 288 n n 
PA O3 NAP sing 289 n n 
O2A HOA2 NAP sing 290 n n 
O5B C5B NAP sing 291 n n 
C5B C4B NAP sing 292 n n 
C5B H51A NAP sing 293 n n 
C5B H52A NAP sing 294 n n 
C4B O4B NAP sing 295 n n 
C4B C3B NAP sing 296 n n 
C4B H4B NAP sing 297 n n 
O4B C1B NAP sing 298 n n 
C3B O3B NAP sing 299 n n 
C3B C2B NAP sing 300 n n 
C3B H3B NAP sing 301 n n 
O3B HO3A NAP sing 302 n n 
C2B O2B NAP sing 303 n n 
C2B C1B NAP sing 304 n n 
C2B H2B NAP sing 305 n n 
O2B P2B NAP sing 306 n n 
C1B N9A NAP sing 307 n n 
C1B H1B NAP sing 308 n n 
N9A C8A NAP sing 309 n y 
N9A C4A NAP sing 310 n y 
C8A N7A NAP doub 311 n y 
C8A H8A NAP sing 312 n n 
N7A C5A NAP sing 313 n y 
C5A C6A NAP sing 314 n y 
C5A C4A NAP doub 315 n y 
C6A N6A NAP sing 316 n n 
C6A N1A NAP doub 317 n y 
N6A H61A NAP sing 318 n n 
N6A H62A NAP sing 319 n n 
N1A C2A NAP sing 320 n y 
C2A N3A NAP doub 321 n y 
C2A H2A NAP sing 322 n n 
N3A C4A NAP sing 323 n y 
O3 PN NAP sing 324 n n 
PN O1N NAP doub 325 n n 
PN O2N NAP sing 326 n n 
PN O5D NAP sing 327 n n 
O5D C5D NAP sing 328 n n 
C5D C4D NAP sing 329 n n 
C5D H51N NAP sing 330 n n 
C5D H52N NAP sing 331 n n 
C4D O4D NAP sing 332 n n 
C4D C3D NAP sing 333 n n 
C4D H4D NAP sing 334 n n 
O4D C1D NAP sing 335 n n 
C3D O3D NAP sing 336 n n 
C3D C2D NAP sing 337 n n 
C3D H3D NAP sing 338 n n 
O3D HO3N NAP sing 339 n n 
C2D O2D NAP sing 340 n n 
C2D C1D NAP sing 341 n n 
C2D H2D NAP sing 342 n n 
O2D HO2N NAP sing 343 n n 
C1D N1N NAP sing 344 n n 
C1D H1D NAP sing 345 n n 
N1N C2N NAP sing 346 n y 
N1N C6N NAP doub 347 n y 
C2N C3N NAP doub 348 n y 
C2N H2N NAP sing 349 n n 
C3N C7N NAP sing 350 n n 
C3N C4N NAP sing 351 n y 
C7N O7N NAP doub 352 n n 
C7N N7N NAP sing 353 n n 
N7N H71N NAP sing 354 n n 
N7N H72N NAP sing 355 n n 
C4N C5N NAP doub 356 n y 
C4N H4N NAP sing 357 n n 
C5N C6N NAP sing 358 n y 
C5N H5N NAP sing 359 n n 
C6N H6N NAP sing 360 n n 
P2B O1X NAP doub 361 n n 
P2B O2X NAP sing 362 n n 
P2B O3X NAP sing 363 n n 
O2X HOP2 NAP sing 364 n n 
O3X HOP3 NAP sing 365 n n 
#
_atom_sites.entry_id                     6O2Y 
_atom_sites.fract_transf_matrix[1][1]    0.006036 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001012 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015749 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007061 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 LJY A 1 500 500 LJY 010 . 
E 3 NAP A 1 501 501 NAP NDP . 
F 4 BME A 1 502 502 BME BME . 
G 2 LJY B 1 500 500 LJY 010 . 
H 3 NAP B 1 501 501 NAP NDP . 
I 2 LJY C 1 500 500 LJY 010 . 
J 3 NAP C 1 501 501 NAP NDP . 
K 5 HOH A 1 601 14 HOH HOH . 
K 5 HOH A 2 602 18 HOH HOH . 
K 5 HOH A 3 603 19 HOH HOH . 
K 5 HOH A 4 604 1 HOH HOH . 
K 5 HOH A 5 605 10 HOH HOH . 
K 5 HOH A 6 606 7 HOH HOH . 
K 5 HOH A 7 607 13 HOH HOH . 
K 5 HOH A 8 608 8 HOH HOH . 
K 5 HOH A 9 609 4 HOH HOH . 
K 5 HOH A 10 610 16 HOH HOH . 
K 5 HOH A 11 611 20 HOH HOH . 
K 5 HOH A 12 612 21 HOH HOH . 
L 5 HOH B 1 601 23 HOH HOH . 
L 5 HOH B 2 602 11 HOH HOH . 
L 5 HOH B 3 603 5 HOH HOH . 
L 5 HOH B 4 604 6 HOH HOH . 
L 5 HOH B 5 605 22 HOH HOH . 
L 5 HOH B 6 606 9 HOH HOH . 
L 5 HOH B 7 607 12 HOH HOH . 
L 5 HOH B 8 608 2 HOH HOH . 
M 5 HOH C 1 601 3 HOH HOH . 
M 5 HOH C 2 602 15 HOH HOH . 
M 5 HOH C 3 603 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 3 -7.923 -10.927 50.16 1 63.48 ? PA NAP 501 A 1 
HETATM 2 O O1A NAP . . . E 3 -8.652 -10.194 49.058 1 67.56 ? O1A NAP 501 A 1 
HETATM 3 O O2A NAP . . . E 3 -6.576 -10.435 50.603 1 61.98 ? O2A NAP 501 A 1 
HETATM 4 O O5B NAP . . . E 3 -7.71 -12.458 49.746 1 61.81 ? O5B NAP 501 A 1 
HETATM 5 C C5B NAP . . . E 3 -8.802 -13.279 49.359 1 62.24 ? C5B NAP 501 A 1 
HETATM 6 C C4B NAP . . . E 3 -8.381 -14.214 48.235 1 62.76 ? C4B NAP 501 A 1 
HETATM 7 O O4B NAP . . . E 3 -8.619 -13.618 46.95 1 64.11 ? O4B NAP 501 A 1 
HETATM 8 C C3B NAP . . . E 3 -6.91 -14.615 48.229 1 62.22 ? C3B NAP 501 A 1 
HETATM 9 O O3B NAP . . . E 3 -6.671 -15.695 49.142 1 61.83 ? O3B NAP 501 A 1 
HETATM 10 C C2B NAP . . . E 3 -6.712 -14.953 46.768 1 60.58 ? C2B NAP 501 A 1 
HETATM 11 O O2B NAP . . . E 3 -7.318 -16.2 46.46 1 63.85 ? O2B NAP 501 A 1 
HETATM 12 C C1B NAP . . . E 3 -7.538 -13.907 46.061 1 58.69 ? C1B NAP 501 A 1 
HETATM 13 N N9A NAP . . . E 3 -6.777 -12.673 45.802 1 54.91 ? N9A NAP 501 A 1 
HETATM 14 C C8A NAP . . . E 3 -7.024 -11.479 46.357 1 55.37 ? C8A NAP 501 A 1 
HETATM 15 N N7A NAP . . . E 3 -6.153 -10.548 45.905 1 55.71 ? N7A NAP 501 A 1 
HETATM 16 C C5A NAP . . . E 3 -5.347 -11.147 45.034 1 51.9 ? C5A NAP 501 A 1 
HETATM 17 C C6A NAP . . . E 3 -4.222 -10.716 44.204 1 54.24 ? C6A NAP 501 A 1 
HETATM 18 N N6A NAP . . . E 3 -3.805 -9.428 44.246 1 55.69 ? N6A NAP 501 A 1 
HETATM 19 N N1A NAP . . . E 3 -3.64 -11.652 43.42 1 55.96 ? N1A NAP 501 A 1 
HETATM 20 C C2A NAP . . . E 3 -4.064 -12.935 43.392 1 55.54 ? C2A NAP 501 A 1 
HETATM 21 N N3A NAP . . . E 3 -5.089 -13.385 44.139 1 53.82 ? N3A NAP 501 A 1 
HETATM 22 C C4A NAP . . . E 3 -5.757 -12.549 44.962 1 52.99 ? C4A NAP 501 A 1 
HETATM 23 O O3 NAP . . . E 3 -8.97 -10.988 51.379 1 60.46 ? O3 NAP 501 A 1 
HETATM 24 P PN NAP . . . E 3 -8.782 -11.822 52.744 1 55.73 ? PN NAP 501 A 1 
HETATM 25 O O1N NAP . . . E 3 -10.183 -12.018 53.26 1 55.49 ? O1N NAP 501 A 1 
HETATM 26 O O2N NAP . . . E 3 -7.831 -12.987 52.587 1 52.15 ? O2N NAP 501 A 1 
HETATM 27 O O5D NAP . . . E 3 -8.105 -10.677 53.638 1 54.75 ? O5D NAP 501 A 1 
HETATM 28 C C5D NAP . . . E 3 -6.722 -10.658 53.971 1 53.24 ? C5D NAP 501 A 1 
HETATM 29 C C4D NAP . . . E 3 -6.459 -9.449 54.861 1 55.93 ? C4D NAP 501 A 1 
HETATM 30 O O4D NAP . . . E 3 -6.606 -8.235 54.109 1 56.62 ? O4D NAP 501 A 1 
HETATM 31 C C3D NAP . . . E 3 -7.402 -9.345 56.06 1 56.48 ? C3D NAP 501 A 1 
HETATM 32 O O3D NAP . . . E 3 -6.649 -8.979 57.229 1 55.88 ? O3D NAP 501 A 1 
HETATM 33 C C2D NAP . . . E 3 -8.403 -8.283 55.656 1 55.16 ? C2D NAP 501 A 1 
HETATM 34 O O2D NAP . . . E 3 -8.96 -7.586 56.777 1 55.44 ? O2D NAP 501 A 1 
HETATM 35 C C1D NAP . . . E 3 -7.564 -7.381 54.746 1 55.26 ? C1D NAP 501 A 1 
HETATM 36 N N1N NAP . . . E 3 -8.306 -6.566 53.751 1 55.95 ? N1N NAP 501 A 1 
HETATM 37 C C2N NAP . . . E 3 -7.849 -5.316 53.545 1 56 ? C2N NAP 501 A 1 
HETATM 38 C C3N NAP . . . E 3 -8.426 -4.414 52.659 1 57.48 ? C3N NAP 501 A 1 
HETATM 39 C C7N NAP . . . E 3 -7.81 -3.043 52.509 1 61.43 ? C7N NAP 501 A 1 
HETATM 40 O O7N NAP . . . E 3 -6.602 -2.906 52.598 1 66.13 ? O7N NAP 501 A 1 
HETATM 41 N N7N NAP . . . E 3 -8.559 -1.97 52.283 1 64.75 ? N7N NAP 501 A 1 
HETATM 42 C C4N NAP . . . E 3 -9.636 -4.834 51.853 1 57.06 ? C4N NAP 501 A 1 
HETATM 43 C C5N NAP . . . E 3 -10.057 -6.206 52.152 1 55.5 ? C5N NAP 501 A 1 
HETATM 44 C C6N NAP . . . E 3 -9.388 -7.015 53.072 1 54.44 ? C6N NAP 501 A 1 
HETATM 45 P P2B NAP . . . E 3 -6.462 -17.538 46.285 1 67.96 ? P2B NAP 501 A 1 
HETATM 46 O O1X NAP . . . E 3 -5.623 -17.24 45.065 1 68.62 ? O1X NAP 501 A 1 
HETATM 47 O O2X NAP . . . E 3 -5.631 -17.629 47.535 1 75.65 ? O2X NAP 501 A 1 
HETATM 48 O O3X NAP . . . E 3 -7.535 -18.591 46.207 1 65.8 ? O3X NAP 501 A 1 
#
_model_server_stats.io_time_ms              113 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#