data_6O2Y # _model_server_result.job_id ANAAou2-nFkdpEKMk4EDfQ _model_server_result.datetime_utc '2024-10-25 20:22:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 6O2Y # _exptl.entry_id 6O2Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.52 _cell.angle_gamma 90 _cell.entry_id 6O2Y _cell.length_a 165.679 _cell.length_b 63.496 _cell.length_c 143.598 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O2Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,K,L 1 1 C,I,J,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 6O2Y _atom_sites.fract_transf_matrix[1][1] 0.006036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001012 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 LJY A 1 500 500 LJY 010 . E 3 NAP A 1 501 501 NAP NDP . F 4 BME A 1 502 502 BME BME . G 2 LJY B 1 500 500 LJY 010 . H 3 NAP B 1 501 501 NAP NDP . I 2 LJY C 1 500 500 LJY 010 . J 3 NAP C 1 501 501 NAP NDP . K 5 HOH A 1 601 14 HOH HOH . K 5 HOH A 2 602 18 HOH HOH . K 5 HOH A 3 603 19 HOH HOH . K 5 HOH A 4 604 1 HOH HOH . K 5 HOH A 5 605 10 HOH HOH . K 5 HOH A 6 606 7 HOH HOH . K 5 HOH A 7 607 13 HOH HOH . K 5 HOH A 8 608 8 HOH HOH . K 5 HOH A 9 609 4 HOH HOH . K 5 HOH A 10 610 16 HOH HOH . K 5 HOH A 11 611 20 HOH HOH . K 5 HOH A 12 612 21 HOH HOH . L 5 HOH B 1 601 23 HOH HOH . L 5 HOH B 2 602 11 HOH HOH . L 5 HOH B 3 603 5 HOH HOH . L 5 HOH B 4 604 6 HOH HOH . L 5 HOH B 5 605 22 HOH HOH . L 5 HOH B 6 606 9 HOH HOH . L 5 HOH B 7 607 12 HOH HOH . L 5 HOH B 8 608 2 HOH HOH . M 5 HOH C 1 601 3 HOH HOH . M 5 HOH C 2 602 15 HOH HOH . M 5 HOH C 3 603 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . F 4 -26.131 -3.087 42.368 1 69.39 ? C1 BME 502 A 1 HETATM 2 C C2 BME . . . F 4 -26.944 -3.656 43.527 1 71.63 ? C2 BME 502 A 1 HETATM 3 O O1 BME . . . F 4 -24.788 -3.568 42.432 1 67.95 ? O1 BME 502 A 1 HETATM 4 S S2 BME . . . F 4 -27.956 -2.413 44.385 1 78.34 ? S2 BME 502 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #