data_6O2Z # _model_server_result.job_id BxbkGCgtjgccVwtPuWEntA _model_server_result.datetime_utc '2025-01-26 02:42:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6O2Z # _exptl.entry_id 6O2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O2Z _cell.length_a 82.344 _cell.length_b 82.344 _cell.length_c 303.74 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 288 n n PA O2A NAP sing 289 n n PA O5B NAP sing 290 n n PA O3 NAP sing 291 n n O2A HOA2 NAP sing 292 n n O5B C5B NAP sing 293 n n C5B C4B NAP sing 294 n n C5B H51A NAP sing 295 n n C5B H52A NAP sing 296 n n C4B O4B NAP sing 297 n n C4B C3B NAP sing 298 n n C4B H4B NAP sing 299 n n O4B C1B NAP sing 300 n n C3B O3B NAP sing 301 n n C3B C2B NAP sing 302 n n C3B H3B NAP sing 303 n n O3B HO3A NAP sing 304 n n C2B O2B NAP sing 305 n n C2B C1B NAP sing 306 n n C2B H2B NAP sing 307 n n O2B P2B NAP sing 308 n n C1B N9A NAP sing 309 n n C1B H1B NAP sing 310 n n N9A C8A NAP sing 311 n y N9A C4A NAP sing 312 n y C8A N7A NAP doub 313 n y C8A H8A NAP sing 314 n n N7A C5A NAP sing 315 n y C5A C6A NAP sing 316 n y C5A C4A NAP doub 317 n y C6A N6A NAP sing 318 n n C6A N1A NAP doub 319 n y N6A H61A NAP sing 320 n n N6A H62A NAP sing 321 n n N1A C2A NAP sing 322 n y C2A N3A NAP doub 323 n y C2A H2A NAP sing 324 n n N3A C4A NAP sing 325 n y O3 PN NAP sing 326 n n PN O1N NAP doub 327 n n PN O2N NAP sing 328 n n PN O5D NAP sing 329 n n O5D C5D NAP sing 330 n n C5D C4D NAP sing 331 n n C5D H51N NAP sing 332 n n C5D H52N NAP sing 333 n n C4D O4D NAP sing 334 n n C4D C3D NAP sing 335 n n C4D H4D NAP sing 336 n n O4D C1D NAP sing 337 n n C3D O3D NAP sing 338 n n C3D C2D NAP sing 339 n n C3D H3D NAP sing 340 n n O3D HO3N NAP sing 341 n n C2D O2D NAP sing 342 n n C2D C1D NAP sing 343 n n C2D H2D NAP sing 344 n n O2D HO2N NAP sing 345 n n C1D N1N NAP sing 346 n n C1D H1D NAP sing 347 n n N1N C2N NAP sing 348 n y N1N C6N NAP doub 349 n y C2N C3N NAP doub 350 n y C2N H2N NAP sing 351 n n C3N C7N NAP sing 352 n n C3N C4N NAP sing 353 n y C7N O7N NAP doub 354 n n C7N N7N NAP sing 355 n n N7N H71N NAP sing 356 n n N7N H72N NAP sing 357 n n C4N C5N NAP doub 358 n y C4N H4N NAP sing 359 n n C5N C6N NAP sing 360 n y C5N H5N NAP sing 361 n n C6N H6N NAP sing 362 n n P2B O1X NAP doub 363 n n P2B O2X NAP sing 364 n n P2B O3X NAP sing 365 n n O2X HOP2 NAP sing 366 n n O3X HOP3 NAP sing 367 n n # _atom_sites.entry_id 6O2Z _atom_sites.fract_transf_matrix[1][1] 0.012144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LJV A 1 500 500 LJV z19 . D 3 NAP A 1 501 501 NAP NDP . E 4 GOL A 1 502 502 GOL GOL . F 2 LJV B 1 500 500 LJV z19 . G 3 NAP B 1 501 501 NAP NDP . H 4 GOL B 1 502 502 GOL GOL . I 5 HOH A 1 601 99 HOH HOH . I 5 HOH A 2 602 110 HOH HOH . I 5 HOH A 3 603 84 HOH HOH . I 5 HOH A 4 604 51 HOH HOH . I 5 HOH A 5 605 122 HOH HOH . I 5 HOH A 6 606 48 HOH HOH . I 5 HOH A 7 607 74 HOH HOH . I 5 HOH A 8 608 49 HOH HOH . I 5 HOH A 9 609 13 HOH HOH . I 5 HOH A 10 610 47 HOH HOH . I 5 HOH A 11 611 87 HOH HOH . I 5 HOH A 12 612 55 HOH HOH . I 5 HOH A 13 613 104 HOH HOH . I 5 HOH A 14 614 57 HOH HOH . I 5 HOH A 15 615 20 HOH HOH . I 5 HOH A 16 616 60 HOH HOH . I 5 HOH A 17 617 71 HOH HOH . I 5 HOH A 18 618 70 HOH HOH . I 5 HOH A 19 619 45 HOH HOH . I 5 HOH A 20 620 115 HOH HOH . I 5 HOH A 21 621 75 HOH HOH . I 5 HOH A 22 622 21 HOH HOH . I 5 HOH A 23 623 41 HOH HOH . I 5 HOH A 24 624 94 HOH HOH . I 5 HOH A 25 625 30 HOH HOH . I 5 HOH A 26 626 124 HOH HOH . I 5 HOH A 27 627 26 HOH HOH . I 5 HOH A 28 628 59 HOH HOH . I 5 HOH A 29 629 32 HOH HOH . I 5 HOH A 30 630 16 HOH HOH . I 5 HOH A 31 631 6 HOH HOH . I 5 HOH A 32 632 128 HOH HOH . I 5 HOH A 33 633 132 HOH HOH . I 5 HOH A 34 634 101 HOH HOH . I 5 HOH A 35 635 54 HOH HOH . I 5 HOH A 36 636 34 HOH HOH . I 5 HOH A 37 637 36 HOH HOH . I 5 HOH A 38 638 1 HOH HOH . I 5 HOH A 39 639 80 HOH HOH . I 5 HOH A 40 640 137 HOH HOH . I 5 HOH A 41 641 119 HOH HOH . I 5 HOH A 42 642 67 HOH HOH . I 5 HOH A 43 643 78 HOH HOH . I 5 HOH A 44 644 2 HOH HOH . I 5 HOH A 45 645 66 HOH HOH . I 5 HOH A 46 646 76 HOH HOH . I 5 HOH A 47 647 43 HOH HOH . I 5 HOH A 48 648 33 HOH HOH . I 5 HOH A 49 649 10 HOH HOH . I 5 HOH A 50 650 56 HOH HOH . I 5 HOH A 51 651 22 HOH HOH . I 5 HOH A 52 652 28 HOH HOH . I 5 HOH A 53 653 86 HOH HOH . I 5 HOH A 54 654 4 HOH HOH . I 5 HOH A 55 655 85 HOH HOH . I 5 HOH A 56 656 11 HOH HOH . I 5 HOH A 57 657 125 HOH HOH . I 5 HOH A 58 658 18 HOH HOH . I 5 HOH A 59 659 65 HOH HOH . I 5 HOH A 60 660 116 HOH HOH . I 5 HOH A 61 661 81 HOH HOH . I 5 HOH A 62 662 14 HOH HOH . I 5 HOH A 63 663 63 HOH HOH . I 5 HOH A 64 664 15 HOH HOH . I 5 HOH A 65 665 77 HOH HOH . I 5 HOH A 66 666 12 HOH HOH . I 5 HOH A 67 667 42 HOH HOH . I 5 HOH A 68 668 108 HOH HOH . I 5 HOH A 69 669 111 HOH HOH . I 5 HOH A 70 670 131 HOH HOH . I 5 HOH A 71 671 134 HOH HOH . I 5 HOH A 72 672 112 HOH HOH . I 5 HOH A 73 673 69 HOH HOH . I 5 HOH A 74 674 89 HOH HOH . I 5 HOH A 75 675 130 HOH HOH . I 5 HOH A 76 676 53 HOH HOH . I 5 HOH A 77 677 133 HOH HOH . J 5 HOH B 1 601 140 HOH HOH . J 5 HOH B 2 602 50 HOH HOH . J 5 HOH B 3 603 58 HOH HOH . J 5 HOH B 4 604 9 HOH HOH . J 5 HOH B 5 605 83 HOH HOH . J 5 HOH B 6 606 7 HOH HOH . J 5 HOH B 7 607 106 HOH HOH . J 5 HOH B 8 608 102 HOH HOH . J 5 HOH B 9 609 39 HOH HOH . J 5 HOH B 10 610 91 HOH HOH . J 5 HOH B 11 611 123 HOH HOH . J 5 HOH B 12 612 97 HOH HOH . J 5 HOH B 13 613 103 HOH HOH . J 5 HOH B 14 614 40 HOH HOH . J 5 HOH B 15 615 19 HOH HOH . J 5 HOH B 16 616 61 HOH HOH . J 5 HOH B 17 617 31 HOH HOH . J 5 HOH B 18 618 95 HOH HOH . J 5 HOH B 19 619 118 HOH HOH . J 5 HOH B 20 620 17 HOH HOH . J 5 HOH B 21 621 107 HOH HOH . J 5 HOH B 22 622 29 HOH HOH . J 5 HOH B 23 623 79 HOH HOH . J 5 HOH B 24 624 25 HOH HOH . J 5 HOH B 25 625 68 HOH HOH . J 5 HOH B 26 626 113 HOH HOH . J 5 HOH B 27 627 90 HOH HOH . J 5 HOH B 28 628 96 HOH HOH . J 5 HOH B 29 629 8 HOH HOH . J 5 HOH B 30 630 38 HOH HOH . J 5 HOH B 31 631 129 HOH HOH . J 5 HOH B 32 632 23 HOH HOH . J 5 HOH B 33 633 44 HOH HOH . J 5 HOH B 34 634 37 HOH HOH . J 5 HOH B 35 635 100 HOH HOH . J 5 HOH B 36 636 24 HOH HOH . J 5 HOH B 37 637 126 HOH HOH . J 5 HOH B 38 638 72 HOH HOH . J 5 HOH B 39 639 27 HOH HOH . J 5 HOH B 40 640 127 HOH HOH . J 5 HOH B 41 641 98 HOH HOH . J 5 HOH B 42 642 88 HOH HOH . J 5 HOH B 43 643 5 HOH HOH . J 5 HOH B 44 644 62 HOH HOH . J 5 HOH B 45 645 3 HOH HOH . J 5 HOH B 46 646 117 HOH HOH . J 5 HOH B 47 647 114 HOH HOH . J 5 HOH B 48 648 64 HOH HOH . J 5 HOH B 49 649 52 HOH HOH . J 5 HOH B 50 650 73 HOH HOH . J 5 HOH B 51 651 82 HOH HOH . J 5 HOH B 52 652 46 HOH HOH . J 5 HOH B 53 653 109 HOH HOH . J 5 HOH B 54 654 105 HOH HOH . J 5 HOH B 55 655 121 HOH HOH . J 5 HOH B 56 656 136 HOH HOH . J 5 HOH B 57 657 139 HOH HOH . J 5 HOH B 58 658 135 HOH HOH . J 5 HOH B 59 659 138 HOH HOH . J 5 HOH B 60 660 93 HOH HOH . J 5 HOH B 61 661 35 HOH HOH . J 5 HOH B 62 662 92 HOH HOH . J 5 HOH B 63 663 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 3 -29.369 16.472 -14.556 1 56.41 ? PA NAP 501 A 1 HETATM 2 O O1A NAP . . . D 3 -29.271 15.044 -14.132 1 61.33 ? O1A NAP 501 A 1 HETATM 3 O O2A NAP . . . D 3 -29.431 16.796 -16.011 1 62.26 ? O2A NAP 501 A 1 HETATM 4 O O5B NAP . . . D 3 -28.124 17.274 -13.954 1 58.81 ? O5B NAP 501 A 1 HETATM 5 C C5B NAP . . . D 3 -27.921 17.4 -12.519 1 54.6 ? C5B NAP 501 A 1 HETATM 6 C C4B NAP . . . D 3 -26.462 17.678 -12.272 1 49.37 ? C4B NAP 501 A 1 HETATM 7 O O4B NAP . . . D 3 -25.77 16.426 -12.008 1 48.69 ? O4B NAP 501 A 1 HETATM 8 C C3B NAP . . . D 3 -25.685 18.288 -13.446 1 51.64 ? C3B NAP 501 A 1 HETATM 9 O O3B NAP . . . D 3 -25.924 19.685 -13.55 1 50.61 ? O3B NAP 501 A 1 HETATM 10 C C2B NAP . . . D 3 -24.268 17.874 -13.06 1 54.48 ? C2B NAP 501 A 1 HETATM 11 O O2B NAP . . . D 3 -23.785 18.511 -11.863 1 58.92 ? O2B NAP 501 A 1 HETATM 12 C C1B NAP . . . D 3 -24.532 16.419 -12.692 1 53.03 ? C1B NAP 501 A 1 HETATM 13 N N9A NAP . . . D 3 -24.606 15.502 -13.831 1 51.63 ? N9A NAP 501 A 1 HETATM 14 C C8A NAP . . . D 3 -25.724 14.838 -14.276 1 50.32 ? C8A NAP 501 A 1 HETATM 15 N N7A NAP . . . D 3 -25.497 14.062 -15.304 1 47.58 ? N7A NAP 501 A 1 HETATM 16 C C5A NAP . . . D 3 -24.139 14.198 -15.55 1 46.75 ? C5A NAP 501 A 1 HETATM 17 C C6A NAP . . . D 3 -23.285 13.615 -16.508 1 44.14 ? C6A NAP 501 A 1 HETATM 18 N N6A NAP . . . D 3 -23.688 12.756 -17.438 1 41.92 ? N6A NAP 501 A 1 HETATM 19 N N1A NAP . . . D 3 -21.977 13.963 -16.477 1 48.04 ? N1A NAP 501 A 1 HETATM 20 C C2A NAP . . . D 3 -21.573 14.838 -15.546 1 51.41 ? C2A NAP 501 A 1 HETATM 21 N N3A NAP . . . D 3 -22.283 15.445 -14.595 1 51.52 ? N3A NAP 501 A 1 HETATM 22 C C4A NAP . . . D 3 -23.578 15.086 -14.648 1 49.69 ? C4A NAP 501 A 1 HETATM 23 O O3 NAP . . . D 3 -30.657 17.114 -13.831 1 57.2 ? O3 NAP 501 A 1 HETATM 24 P PN NAP . . . D 3 -31.338 18.569 -13.964 1 64.68 ? PN NAP 501 A 1 HETATM 25 O O1N NAP . . . D 3 -32.079 18.868 -12.696 1 58.07 ? O1N NAP 501 A 1 HETATM 26 O O2N NAP . . . D 3 -30.265 19.492 -14.473 1 56.52 ? O2N NAP 501 A 1 HETATM 27 O O5D NAP . . . D 3 -32.424 18.35 -15.122 1 64.69 ? O5D NAP 501 A 1 HETATM 28 C C5D NAP . . . D 3 -32.211 18.871 -16.469 1 63.47 ? C5D NAP 501 A 1 HETATM 29 C C4D NAP . . . D 3 -33.355 18.4 -17.331 1 63.65 ? C4D NAP 501 A 1 HETATM 30 O O4D NAP . . . D 3 -33.334 16.949 -17.36 1 64.41 ? O4D NAP 501 A 1 HETATM 31 C C3D NAP . . . D 3 -34.758 18.814 -16.842 1 66.67 ? C3D NAP 501 A 1 HETATM 32 O O3D NAP . . . D 3 -35.481 19.532 -17.836 1 61.37 ? O3D NAP 501 A 1 HETATM 33 C C2D NAP . . . D 3 -35.408 17.481 -16.431 1 66.94 ? C2D NAP 501 A 1 HETATM 34 O O2D NAP . . . D 3 -36.788 17.368 -16.729 1 63.07 ? O2D NAP 501 A 1 HETATM 35 C C1D NAP . . . D 3 -34.652 16.446 -17.248 1 70.63 ? C1D NAP 501 A 1 HETATM 36 N N1N NAP . . . D 3 -34.655 15.071 -16.632 1 79.87 ? N1N NAP 501 A 1 HETATM 37 C C2N NAP . . . D 3 -34.845 13.997 -17.465 1 80.45 ? C2N NAP 501 A 1 HETATM 38 C C3N NAP . . . D 3 -34.8 12.691 -17.037 1 79.24 ? C3N NAP 501 A 1 HETATM 39 C C7N NAP . . . D 3 -34.859 11.658 -18.108 1 71.5 ? C7N NAP 501 A 1 HETATM 40 O O7N NAP . . . D 3 -34.407 10.526 -17.908 1 76.35 ? O7N NAP 501 A 1 HETATM 41 N N7N NAP . . . D 3 -35.386 12.009 -19.272 1 51.29 ? N7N NAP 501 A 1 HETATM 42 C C4N NAP . . . D 3 -34.692 12.428 -15.569 1 71.64 ? C4N NAP 501 A 1 HETATM 43 C C5N NAP . . . D 3 -34.389 13.64 -14.757 1 76 ? C5N NAP 501 A 1 HETATM 44 C C6N NAP . . . D 3 -34.468 14.858 -15.262 1 76.75 ? C6N NAP 501 A 1 HETATM 45 P P2B NAP . . . D 3 -22.82 19.823 -11.981 1 63.76 ? P2B NAP 501 A 1 HETATM 46 O O1X NAP . . . D 3 -22.479 19.941 -10.492 1 60.34 ? O1X NAP 501 A 1 HETATM 47 O O2X NAP . . . D 3 -21.611 19.561 -12.869 1 51.13 ? O2X NAP 501 A 1 HETATM 48 O O3X NAP . . . D 3 -23.64 21.011 -12.495 1 65.59 ? O3X NAP 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #