data_6O3B # _model_server_result.job_id P-9rFD6SJd_2SfneTDQNkA _model_server_result.datetime_utc '2024-11-05 21:25:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 6O3B # _exptl.entry_id 6O3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.82 _cell.angle_gamma 90 _cell.entry_id 6O3B _cell.length_a 139.642 _cell.length_b 85.848 _cell.length_c 104.103 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,N,O,P 1 1 D,E,F,K,L,M,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 147 B CYS 140 1_555 B SG CYS 203 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 10 C CYS 49 1_555 C SG CYS 71 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 18 C CYS 57 1_555 C SG CYS 64 C CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf7 C SG CYS 55 C CYS 94 1_555 C SG CYS 92 C CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 C SG CYS 81 C CYS 120 1_555 C SG CYS 121 C CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 C SG CYS 85 C CYS 124 1_555 C SG CYS 109 C CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 D SG CYS 23 E CYS 23 1_555 D SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 D SG CYS 134 E CYS 134 1_555 D SG CYS 194 E CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 E SG CYS 22 G CYS 22 1_555 E SG CYS 96 G CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 E SG CYS 147 G CYS 147 1_555 E SG CYS 203 G CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 F SG CYS 10 H CYS 49 1_555 F SG CYS 71 H CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf15 F SG CYS 18 H CYS 57 1_555 F SG CYS 64 H CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 F SG CYS 55 H CYS 94 1_555 F SG CYS 92 H CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 F SG CYS 81 H CYS 120 1_555 F SG CYS 121 H CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 F SG CYS 85 H CYS 124 1_555 F SG CYS 109 H CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 C ND2 ASN 24 C ASN 63 1_555 I C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 F ND2 ASN 24 H ASN 63 1_555 L C1 NAG . H NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6O3B _atom_sites.fract_transf_matrix[1][1] 0.007161 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00073 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GOL B 1 301 2 GOL GOL . H 4 GOL B 1 302 4 GOL GOL . I 5 NAG C 1 201 166 NAG NAG . J 4 GOL C 1 202 5 GOL GOL . K 4 GOL G 1 301 3 GOL GOL . L 5 NAG H 1 201 166 NAG NAG . M 4 GOL H 1 202 1 GOL GOL . N 6 HOH A 1 301 45 HOH HOH . N 6 HOH A 2 302 32 HOH HOH . N 6 HOH A 3 303 53 HOH HOH . N 6 HOH A 4 304 134 HOH HOH . N 6 HOH A 5 305 152 HOH HOH . N 6 HOH A 6 306 64 HOH HOH . N 6 HOH A 7 307 167 HOH HOH . N 6 HOH A 8 308 130 HOH HOH . N 6 HOH A 9 309 33 HOH HOH . N 6 HOH A 10 310 65 HOH HOH . N 6 HOH A 11 311 91 HOH HOH . N 6 HOH A 12 312 5 HOH HOH . N 6 HOH A 13 313 58 HOH HOH . N 6 HOH A 14 314 88 HOH HOH . N 6 HOH A 15 315 170 HOH HOH . N 6 HOH A 16 316 43 HOH HOH . N 6 HOH A 17 317 14 HOH HOH . N 6 HOH A 18 318 90 HOH HOH . N 6 HOH A 19 319 83 HOH HOH . N 6 HOH A 20 320 137 HOH HOH . N 6 HOH A 21 321 144 HOH HOH . N 6 HOH A 22 322 118 HOH HOH . N 6 HOH A 23 323 12 HOH HOH . N 6 HOH A 24 324 59 HOH HOH . N 6 HOH A 25 325 4 HOH HOH . N 6 HOH A 26 326 38 HOH HOH . N 6 HOH A 27 327 156 HOH HOH . N 6 HOH A 28 328 57 HOH HOH . N 6 HOH A 29 329 138 HOH HOH . N 6 HOH A 30 330 175 HOH HOH . N 6 HOH A 31 331 100 HOH HOH . N 6 HOH A 32 332 176 HOH HOH . N 6 HOH A 33 333 116 HOH HOH . N 6 HOH A 34 334 107 HOH HOH . N 6 HOH A 35 335 172 HOH HOH . N 6 HOH A 36 336 48 HOH HOH . N 6 HOH A 37 337 119 HOH HOH . N 6 HOH A 38 338 123 HOH HOH . N 6 HOH A 39 339 109 HOH HOH . N 6 HOH A 40 340 154 HOH HOH . N 6 HOH A 41 341 159 HOH HOH . N 6 HOH A 42 342 79 HOH HOH . N 6 HOH A 43 343 160 HOH HOH . N 6 HOH A 44 344 158 HOH HOH . N 6 HOH A 45 345 161 HOH HOH . N 6 HOH A 46 346 103 HOH HOH . N 6 HOH A 47 347 99 HOH HOH . O 6 HOH B 1 401 77 HOH HOH . O 6 HOH B 2 402 29 HOH HOH . O 6 HOH B 3 403 16 HOH HOH . O 6 HOH B 4 404 9 HOH HOH . O 6 HOH B 5 405 141 HOH HOH . O 6 HOH B 6 406 80 HOH HOH . O 6 HOH B 7 407 171 HOH HOH . O 6 HOH B 8 408 157 HOH HOH . O 6 HOH B 9 409 31 HOH HOH . O 6 HOH B 10 410 39 HOH HOH . O 6 HOH B 11 411 26 HOH HOH . O 6 HOH B 12 412 71 HOH HOH . O 6 HOH B 13 413 69 HOH HOH . O 6 HOH B 14 414 125 HOH HOH . O 6 HOH B 15 415 151 HOH HOH . O 6 HOH B 16 416 97 HOH HOH . O 6 HOH B 17 417 41 HOH HOH . O 6 HOH B 18 418 112 HOH HOH . O 6 HOH B 19 419 13 HOH HOH . O 6 HOH B 20 420 127 HOH HOH . P 6 HOH C 1 301 104 HOH HOH . P 6 HOH C 2 302 1 HOH HOH . P 6 HOH C 3 303 93 HOH HOH . P 6 HOH C 4 304 8 HOH HOH . P 6 HOH C 5 305 6 HOH HOH . P 6 HOH C 6 306 47 HOH HOH . P 6 HOH C 7 307 114 HOH HOH . P 6 HOH C 8 308 120 HOH HOH . P 6 HOH C 9 309 162 HOH HOH . P 6 HOH C 10 310 102 HOH HOH . P 6 HOH C 11 311 85 HOH HOH . P 6 HOH C 12 312 165 HOH HOH . P 6 HOH C 13 313 153 HOH HOH . P 6 HOH C 14 314 7 HOH HOH . P 6 HOH C 15 315 15 HOH HOH . P 6 HOH C 16 316 163 HOH HOH . Q 6 HOH E 1 301 101 HOH HOH . Q 6 HOH E 2 302 132 HOH HOH . Q 6 HOH E 3 303 44 HOH HOH . Q 6 HOH E 4 304 52 HOH HOH . Q 6 HOH E 5 305 82 HOH HOH . Q 6 HOH E 6 306 106 HOH HOH . Q 6 HOH E 7 307 117 HOH HOH . Q 6 HOH E 8 308 18 HOH HOH . Q 6 HOH E 9 309 136 HOH HOH . Q 6 HOH E 10 310 66 HOH HOH . Q 6 HOH E 11 311 92 HOH HOH . Q 6 HOH E 12 312 67 HOH HOH . Q 6 HOH E 13 313 62 HOH HOH . Q 6 HOH E 14 314 60 HOH HOH . Q 6 HOH E 15 315 68 HOH HOH . Q 6 HOH E 16 316 35 HOH HOH . Q 6 HOH E 17 317 169 HOH HOH . Q 6 HOH E 18 318 129 HOH HOH . Q 6 HOH E 19 319 72 HOH HOH . Q 6 HOH E 20 320 75 HOH HOH . Q 6 HOH E 21 321 74 HOH HOH . Q 6 HOH E 22 322 146 HOH HOH . Q 6 HOH E 23 323 17 HOH HOH . Q 6 HOH E 24 324 11 HOH HOH . Q 6 HOH E 25 325 135 HOH HOH . Q 6 HOH E 26 326 10 HOH HOH . Q 6 HOH E 27 327 63 HOH HOH . Q 6 HOH E 28 328 121 HOH HOH . R 6 HOH G 1 401 54 HOH HOH . R 6 HOH G 2 402 27 HOH HOH . R 6 HOH G 3 403 30 HOH HOH . R 6 HOH G 4 404 84 HOH HOH . R 6 HOH G 5 405 36 HOH HOH . R 6 HOH G 6 406 51 HOH HOH . R 6 HOH G 7 407 56 HOH HOH . R 6 HOH G 8 408 19 HOH HOH . R 6 HOH G 9 409 111 HOH HOH . R 6 HOH G 10 410 115 HOH HOH . R 6 HOH G 11 411 73 HOH HOH . R 6 HOH G 12 412 89 HOH HOH . R 6 HOH G 13 413 37 HOH HOH . R 6 HOH G 14 414 108 HOH HOH . R 6 HOH G 15 415 140 HOH HOH . R 6 HOH G 16 416 22 HOH HOH . R 6 HOH G 17 417 86 HOH HOH . R 6 HOH G 18 418 3 HOH HOH . R 6 HOH G 19 419 150 HOH HOH . R 6 HOH G 20 420 34 HOH HOH . R 6 HOH G 21 421 131 HOH HOH . R 6 HOH G 22 422 178 HOH HOH . R 6 HOH G 23 423 46 HOH HOH . R 6 HOH G 24 424 50 HOH HOH . R 6 HOH G 25 425 147 HOH HOH . R 6 HOH G 26 426 98 HOH HOH . R 6 HOH G 27 427 42 HOH HOH . R 6 HOH G 28 428 126 HOH HOH . R 6 HOH G 29 429 94 HOH HOH . R 6 HOH G 30 430 173 HOH HOH . R 6 HOH G 31 431 177 HOH HOH . R 6 HOH G 32 432 174 HOH HOH . R 6 HOH G 33 433 166 HOH HOH . R 6 HOH G 34 434 142 HOH HOH . R 6 HOH G 35 435 55 HOH HOH . S 6 HOH H 1 301 20 HOH HOH . S 6 HOH H 2 302 40 HOH HOH . S 6 HOH H 3 303 110 HOH HOH . S 6 HOH H 4 304 2 HOH HOH . S 6 HOH H 5 305 87 HOH HOH . S 6 HOH H 6 306 21 HOH HOH . S 6 HOH H 7 307 164 HOH HOH . S 6 HOH H 8 308 149 HOH HOH . S 6 HOH H 9 309 28 HOH HOH . S 6 HOH H 10 310 49 HOH HOH . S 6 HOH H 11 311 95 HOH HOH . S 6 HOH H 12 312 122 HOH HOH . S 6 HOH H 13 313 23 HOH HOH . S 6 HOH H 14 314 61 HOH HOH . S 6 HOH H 15 315 105 HOH HOH . S 6 HOH H 16 316 155 HOH HOH . S 6 HOH H 17 317 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 5 -16.08 74.66 19.972 1 79.05 ? C1 NAG 201 C 1 HETATM 2 C C2 NAG . . . I 5 -17.104 75.642 20.584 1 77.97 ? C2 NAG 201 C 1 HETATM 3 C C3 NAG . . . I 5 -16.574 76.421 21.825 1 79.5 ? C3 NAG 201 C 1 HETATM 4 C C4 NAG . . . I 5 -15.083 76.295 22.143 1 80.89 ? C4 NAG 201 C 1 HETATM 5 C C5 NAG . . . I 5 -14.332 75.339 21.237 1 82.55 ? C5 NAG 201 C 1 HETATM 6 C C6 NAG . . . I 5 -13.112 74.74 21.897 1 81.25 ? C6 NAG 201 C 1 HETATM 7 C C7 NAG . . . I 5 -18.451 77.576 19.787 1 75 ? C7 NAG 201 C 1 HETATM 8 C C8 NAG . . . I 5 -18.848 78.36 18.573 1 67.84 ? C8 NAG 201 C 1 HETATM 9 N N2 NAG . . . I 5 -17.613 76.551 19.564 1 78.03 ? N2 NAG 201 C 1 HETATM 10 O O3 NAG . . . I 5 -17.336 76.026 22.961 1 78.4 ? O3 NAG 201 C 1 HETATM 11 O O4 NAG . . . I 5 -14.476 77.583 22.092 1 80.63 ? O4 NAG 201 C 1 HETATM 12 O O5 NAG . . . I 5 -15.204 74.26 20.914 1 81.38 ? O5 NAG 201 C 1 HETATM 13 O O6 NAG . . . I 5 -13.439 73.544 22.59 1 80.45 ? O6 NAG 201 C 1 HETATM 14 O O7 NAG . . . I 5 -18.861 77.869 20.911 1 75.4 ? O7 NAG 201 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #