data_6O3B
#
_model_server_result.job_id            TgvoPkw-uC8nVXmKHMOuog 
_model_server_result.datetime_utc      '2024-11-05 21:14:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o3b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":202}' 
#
_entry.id    6O3B 
#
_exptl.entry_id    6O3B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.82 
_cell.angle_gamma         90 
_cell.entry_id            6O3B 
_cell.length_a            139.642 
_cell.length_b            85.848 
_cell.length_c            104.103 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O3B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,N,O,P 1 1 
D,E,F,K,L,M,Q,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 J N N 
? 4 K N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 147 B CYS 140 1_555 B SG CYS 203 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 C SG CYS 10 C CYS 49 1_555 C SG CYS 71 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 C SG CYS 18 C CYS 57 1_555 C SG CYS 64 C CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf7 C SG CYS 55 C CYS 94 1_555 C SG CYS 92 C CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 C SG CYS 81 C CYS 120 1_555 C SG CYS 121 C CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf9 C SG CYS 85 C CYS 124 1_555 C SG CYS 109 C CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 D SG CYS 23 E CYS 23 1_555 D SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 D SG CYS 134 E CYS 134 1_555 D SG CYS 194 E CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 E SG CYS 22 G CYS 22 1_555 E SG CYS 96 G CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf13 E SG CYS 147 G CYS 147 1_555 E SG CYS 203 G CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf14 F SG CYS 10 H CYS 49 1_555 F SG CYS 71 H CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf15 F SG CYS 18 H CYS 57 1_555 F SG CYS 64 H CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf16 F SG CYS 55 H CYS 94 1_555 F SG CYS 92 H CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf17 F SG CYS 81 H CYS 120 1_555 F SG CYS 121 H CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf18 F SG CYS 85 H CYS 124 1_555 F SG CYS 109 H CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 C ND2 ASN 24 C ASN 63 1_555 I C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale2 F ND2 ASN 24 H ASN 63 1_555 L C1 NAG . H NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6O3B 
_atom_sites.fract_transf_matrix[1][1]    0.007161 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00073 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011648 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 GOL B 1 301 2 GOL GOL . 
H 4 GOL B 1 302 4 GOL GOL . 
I 5 NAG C 1 201 166 NAG NAG . 
J 4 GOL C 1 202 5 GOL GOL . 
K 4 GOL G 1 301 3 GOL GOL . 
L 5 NAG H 1 201 166 NAG NAG . 
M 4 GOL H 1 202 1 GOL GOL . 
N 6 HOH A 1 301 45 HOH HOH . 
N 6 HOH A 2 302 32 HOH HOH . 
N 6 HOH A 3 303 53 HOH HOH . 
N 6 HOH A 4 304 134 HOH HOH . 
N 6 HOH A 5 305 152 HOH HOH . 
N 6 HOH A 6 306 64 HOH HOH . 
N 6 HOH A 7 307 167 HOH HOH . 
N 6 HOH A 8 308 130 HOH HOH . 
N 6 HOH A 9 309 33 HOH HOH . 
N 6 HOH A 10 310 65 HOH HOH . 
N 6 HOH A 11 311 91 HOH HOH . 
N 6 HOH A 12 312 5 HOH HOH . 
N 6 HOH A 13 313 58 HOH HOH . 
N 6 HOH A 14 314 88 HOH HOH . 
N 6 HOH A 15 315 170 HOH HOH . 
N 6 HOH A 16 316 43 HOH HOH . 
N 6 HOH A 17 317 14 HOH HOH . 
N 6 HOH A 18 318 90 HOH HOH . 
N 6 HOH A 19 319 83 HOH HOH . 
N 6 HOH A 20 320 137 HOH HOH . 
N 6 HOH A 21 321 144 HOH HOH . 
N 6 HOH A 22 322 118 HOH HOH . 
N 6 HOH A 23 323 12 HOH HOH . 
N 6 HOH A 24 324 59 HOH HOH . 
N 6 HOH A 25 325 4 HOH HOH . 
N 6 HOH A 26 326 38 HOH HOH . 
N 6 HOH A 27 327 156 HOH HOH . 
N 6 HOH A 28 328 57 HOH HOH . 
N 6 HOH A 29 329 138 HOH HOH . 
N 6 HOH A 30 330 175 HOH HOH . 
N 6 HOH A 31 331 100 HOH HOH . 
N 6 HOH A 32 332 176 HOH HOH . 
N 6 HOH A 33 333 116 HOH HOH . 
N 6 HOH A 34 334 107 HOH HOH . 
N 6 HOH A 35 335 172 HOH HOH . 
N 6 HOH A 36 336 48 HOH HOH . 
N 6 HOH A 37 337 119 HOH HOH . 
N 6 HOH A 38 338 123 HOH HOH . 
N 6 HOH A 39 339 109 HOH HOH . 
N 6 HOH A 40 340 154 HOH HOH . 
N 6 HOH A 41 341 159 HOH HOH . 
N 6 HOH A 42 342 79 HOH HOH . 
N 6 HOH A 43 343 160 HOH HOH . 
N 6 HOH A 44 344 158 HOH HOH . 
N 6 HOH A 45 345 161 HOH HOH . 
N 6 HOH A 46 346 103 HOH HOH . 
N 6 HOH A 47 347 99 HOH HOH . 
O 6 HOH B 1 401 77 HOH HOH . 
O 6 HOH B 2 402 29 HOH HOH . 
O 6 HOH B 3 403 16 HOH HOH . 
O 6 HOH B 4 404 9 HOH HOH . 
O 6 HOH B 5 405 141 HOH HOH . 
O 6 HOH B 6 406 80 HOH HOH . 
O 6 HOH B 7 407 171 HOH HOH . 
O 6 HOH B 8 408 157 HOH HOH . 
O 6 HOH B 9 409 31 HOH HOH . 
O 6 HOH B 10 410 39 HOH HOH . 
O 6 HOH B 11 411 26 HOH HOH . 
O 6 HOH B 12 412 71 HOH HOH . 
O 6 HOH B 13 413 69 HOH HOH . 
O 6 HOH B 14 414 125 HOH HOH . 
O 6 HOH B 15 415 151 HOH HOH . 
O 6 HOH B 16 416 97 HOH HOH . 
O 6 HOH B 17 417 41 HOH HOH . 
O 6 HOH B 18 418 112 HOH HOH . 
O 6 HOH B 19 419 13 HOH HOH . 
O 6 HOH B 20 420 127 HOH HOH . 
P 6 HOH C 1 301 104 HOH HOH . 
P 6 HOH C 2 302 1 HOH HOH . 
P 6 HOH C 3 303 93 HOH HOH . 
P 6 HOH C 4 304 8 HOH HOH . 
P 6 HOH C 5 305 6 HOH HOH . 
P 6 HOH C 6 306 47 HOH HOH . 
P 6 HOH C 7 307 114 HOH HOH . 
P 6 HOH C 8 308 120 HOH HOH . 
P 6 HOH C 9 309 162 HOH HOH . 
P 6 HOH C 10 310 102 HOH HOH . 
P 6 HOH C 11 311 85 HOH HOH . 
P 6 HOH C 12 312 165 HOH HOH . 
P 6 HOH C 13 313 153 HOH HOH . 
P 6 HOH C 14 314 7 HOH HOH . 
P 6 HOH C 15 315 15 HOH HOH . 
P 6 HOH C 16 316 163 HOH HOH . 
Q 6 HOH E 1 301 101 HOH HOH . 
Q 6 HOH E 2 302 132 HOH HOH . 
Q 6 HOH E 3 303 44 HOH HOH . 
Q 6 HOH E 4 304 52 HOH HOH . 
Q 6 HOH E 5 305 82 HOH HOH . 
Q 6 HOH E 6 306 106 HOH HOH . 
Q 6 HOH E 7 307 117 HOH HOH . 
Q 6 HOH E 8 308 18 HOH HOH . 
Q 6 HOH E 9 309 136 HOH HOH . 
Q 6 HOH E 10 310 66 HOH HOH . 
Q 6 HOH E 11 311 92 HOH HOH . 
Q 6 HOH E 12 312 67 HOH HOH . 
Q 6 HOH E 13 313 62 HOH HOH . 
Q 6 HOH E 14 314 60 HOH HOH . 
Q 6 HOH E 15 315 68 HOH HOH . 
Q 6 HOH E 16 316 35 HOH HOH . 
Q 6 HOH E 17 317 169 HOH HOH . 
Q 6 HOH E 18 318 129 HOH HOH . 
Q 6 HOH E 19 319 72 HOH HOH . 
Q 6 HOH E 20 320 75 HOH HOH . 
Q 6 HOH E 21 321 74 HOH HOH . 
Q 6 HOH E 22 322 146 HOH HOH . 
Q 6 HOH E 23 323 17 HOH HOH . 
Q 6 HOH E 24 324 11 HOH HOH . 
Q 6 HOH E 25 325 135 HOH HOH . 
Q 6 HOH E 26 326 10 HOH HOH . 
Q 6 HOH E 27 327 63 HOH HOH . 
Q 6 HOH E 28 328 121 HOH HOH . 
R 6 HOH G 1 401 54 HOH HOH . 
R 6 HOH G 2 402 27 HOH HOH . 
R 6 HOH G 3 403 30 HOH HOH . 
R 6 HOH G 4 404 84 HOH HOH . 
R 6 HOH G 5 405 36 HOH HOH . 
R 6 HOH G 6 406 51 HOH HOH . 
R 6 HOH G 7 407 56 HOH HOH . 
R 6 HOH G 8 408 19 HOH HOH . 
R 6 HOH G 9 409 111 HOH HOH . 
R 6 HOH G 10 410 115 HOH HOH . 
R 6 HOH G 11 411 73 HOH HOH . 
R 6 HOH G 12 412 89 HOH HOH . 
R 6 HOH G 13 413 37 HOH HOH . 
R 6 HOH G 14 414 108 HOH HOH . 
R 6 HOH G 15 415 140 HOH HOH . 
R 6 HOH G 16 416 22 HOH HOH . 
R 6 HOH G 17 417 86 HOH HOH . 
R 6 HOH G 18 418 3 HOH HOH . 
R 6 HOH G 19 419 150 HOH HOH . 
R 6 HOH G 20 420 34 HOH HOH . 
R 6 HOH G 21 421 131 HOH HOH . 
R 6 HOH G 22 422 178 HOH HOH . 
R 6 HOH G 23 423 46 HOH HOH . 
R 6 HOH G 24 424 50 HOH HOH . 
R 6 HOH G 25 425 147 HOH HOH . 
R 6 HOH G 26 426 98 HOH HOH . 
R 6 HOH G 27 427 42 HOH HOH . 
R 6 HOH G 28 428 126 HOH HOH . 
R 6 HOH G 29 429 94 HOH HOH . 
R 6 HOH G 30 430 173 HOH HOH . 
R 6 HOH G 31 431 177 HOH HOH . 
R 6 HOH G 32 432 174 HOH HOH . 
R 6 HOH G 33 433 166 HOH HOH . 
R 6 HOH G 34 434 142 HOH HOH . 
R 6 HOH G 35 435 55 HOH HOH . 
S 6 HOH H 1 301 20 HOH HOH . 
S 6 HOH H 2 302 40 HOH HOH . 
S 6 HOH H 3 303 110 HOH HOH . 
S 6 HOH H 4 304 2 HOH HOH . 
S 6 HOH H 5 305 87 HOH HOH . 
S 6 HOH H 6 306 21 HOH HOH . 
S 6 HOH H 7 307 164 HOH HOH . 
S 6 HOH H 8 308 149 HOH HOH . 
S 6 HOH H 9 309 28 HOH HOH . 
S 6 HOH H 10 310 49 HOH HOH . 
S 6 HOH H 11 311 95 HOH HOH . 
S 6 HOH H 12 312 122 HOH HOH . 
S 6 HOH H 13 313 23 HOH HOH . 
S 6 HOH H 14 314 61 HOH HOH . 
S 6 HOH H 15 315 105 HOH HOH . 
S 6 HOH H 16 316 155 HOH HOH . 
S 6 HOH H 17 317 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 4 -7.96 59.948 25.581 1 48.34 ? C1 GOL 202 C 1 
HETATM 2 O O1 GOL . . . J 4 -7.027 60.929 25.902 1 51.84 ? O1 GOL 202 C 1 
HETATM 3 C C2 GOL . . . J 4 -7.778 59.648 24.081 1 45.82 ? C2 GOL 202 C 1 
HETATM 4 O O2 GOL . . . J 4 -6.594 58.971 23.834 1 45.63 ? O2 GOL 202 C 1 
HETATM 5 C C3 GOL . . . J 4 -9.029 58.827 23.684 1 44.31 ? C3 GOL 202 C 1 
HETATM 6 O O3 GOL . . . J 4 -9.764 59.608 22.794 1 44.31 ? O3 GOL 202 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#