data_6O3C # _model_server_result.job_id g9B-OW0ohx_aClXER-rc-Q _model_server_result.datetime_utc '2025-01-02 21:31:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":610}' # _entry.id 6O3C # _exptl.entry_id 6O3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O3C _cell.length_a 39.01 _cell.length_b 121.09 _cell.length_c 157.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall 'P 2c 2' _symmetry.space_group_name_H-M 'P 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 68 1_555 A SG CYS 141 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 33 A CYS 74 1_555 A SG CYS 97 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 41 A CYS 82 1_555 A SG CYS 90 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 81 A CYS 122 1_555 A SG CYS 117 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 110 A CYS 151 1_555 A SG CYS 132 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 A SG CYS 156 A CYS 197 1_555 A SG CYS 176 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 180 A CYS 221 1_555 A SG CYS 258 A CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 A SG CYS 277 A CYS 318 1_555 A SG CYS 353 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 A SG CYS 453 A CYS 494 1_555 A SG CYS 470 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 39 A ASN 80 1_555 K C1 NAG . A NAG 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 456 A ASN 497 1_555 L C1 NAG . A NAG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A O THR 53 A THR 94 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc2 A O ALA 56 A ALA 97 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc3 A O SER 59 A SER 100 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc4 A OD1 ASP 60 A ASP 101 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.021 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 384 n n C1 O1 NAG sing 385 n n C1 O5 NAG sing 386 n n C1 H1 NAG sing 387 n n C2 C3 NAG sing 388 n n C2 N2 NAG sing 389 n n C2 H2 NAG sing 390 n n C3 C4 NAG sing 391 n n C3 O3 NAG sing 392 n n C3 H3 NAG sing 393 n n C4 C5 NAG sing 394 n n C4 O4 NAG sing 395 n n C4 H4 NAG sing 396 n n C5 C6 NAG sing 397 n n C5 O5 NAG sing 398 n n C5 H5 NAG sing 399 n n C6 O6 NAG sing 400 n n C6 H61 NAG sing 401 n n C6 H62 NAG sing 402 n n C7 C8 NAG sing 403 n n C7 N2 NAG sing 404 n n C7 O7 NAG doub 405 n n C8 H81 NAG sing 406 n n C8 H82 NAG sing 407 n n C8 H83 NAG sing 408 n n N2 HN2 NAG sing 409 n n O1 HO1 NAG sing 410 n n O3 HO3 NAG sing 411 n n O4 HO4 NAG sing 412 n n O6 HO6 NAG sing 413 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6O3C _atom_sites.fract_transf_matrix[1][1] 0.025634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 601 6 PO4 PO4 . D 4 NA A 1 602 7 NA NA . E 5 OLB A 1 603 10 OLB OLB . F 5 OLB A 1 604 11 OLB OLB . G 5 OLB A 1 605 12 OLB OLB . H 5 OLB A 1 606 13 OLB OLB . I 5 OLB A 1 607 14 OLB OLB . J 5 OLB A 1 608 15 OLB OLB . K 6 NAG A 1 609 100 NAG NAG . L 6 NAG A 1 610 101 NAG NAG . M 7 LKD A 1 611 102 LKD LIG . N 8 CLR A 1 612 103 CLR CLR . O 8 CLR A 1 613 104 CLR CLR . P 9 HOH A 1 701 1 HOH HOH . P 9 HOH A 2 702 3 HOH HOH . P 9 HOH A 3 703 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 6 -6.79 44.019 18.432 1 136.55 ? C1 NAG 610 A 1 HETATM 2 C C2 NAG . . . L 6 -6.007 45.314 18.656 1 144.9 ? C2 NAG 610 A 1 HETATM 3 C C3 NAG . . . L 6 -6.332 46.325 17.559 1 143.29 ? C3 NAG 610 A 1 HETATM 4 C C4 NAG . . . L 6 -6.101 45.712 16.184 1 145.45 ? C4 NAG 610 A 1 HETATM 5 C C5 NAG . . . L 6 -6.888 44.412 16.053 1 150.14 ? C5 NAG 610 A 1 HETATM 6 C C6 NAG . . . L 6 -6.613 43.681 14.759 1 137.34 ? C6 NAG 610 A 1 HETATM 7 C C7 NAG . . . L 6 -7.499 46.322 20.324 1 146.52 ? C7 NAG 610 A 1 HETATM 8 C C8 NAG . . . L 6 -7.612 46.872 21.714 1 127.14 ? C8 NAG 610 A 1 HETATM 9 N N2 NAG . . . L 6 -6.29 45.876 19.967 1 153.2 ? N2 NAG 610 A 1 HETATM 10 O O3 NAG . . . L 6 -5.523 47.485 17.72 1 128.48 ? O3 NAG 610 A 1 HETATM 11 O O4 NAG . . . L 6 -6.515 46.619 15.169 1 144.88 ? O4 NAG 610 A 1 HETATM 12 O O5 NAG . . . L 6 -6.526 43.516 17.114 1 143.93 ? O5 NAG 610 A 1 HETATM 13 O O6 NAG . . . L 6 -7.455 44.139 13.71 1 124.73 ? O6 NAG 610 A 1 HETATM 14 O O7 NAG . . . L 6 -8.458 46.283 19.56 1 150.32 ? O7 NAG 610 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 14 #