data_6O3I # _model_server_result.job_id LCsgzUMO4qxmKocygvoXnw _model_server_result.datetime_utc '2024-11-24 04:54:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6O3I # _exptl.entry_id 6O3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O3I _cell.length_a 85.062 _cell.length_b 90.224 _cell.length_c 130.237 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 323 A CYS 308 1_555 B SG CYS 323 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc1 A NE2 HIS 361 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 D N10 LKP . A LKP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 B NE2 HIS 361 B HIS 346 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc4 E FE HEM . B HEM 501 1_555 F N10 LKP . B LKP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6O3I _atom_sites.fract_transf_matrix[1][1] 0.011756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 404 HEM HEM . D 3 LKP A 1 502 1 LKP DRG . E 2 HEM B 1 501 404 HEM HEM . F 3 LKP B 1 502 1 LKP DRG . G 4 HOH A 1 601 72 HOH HOH . G 4 HOH A 2 602 8 HOH HOH . G 4 HOH A 3 603 74 HOH HOH . G 4 HOH A 4 604 106 HOH HOH . G 4 HOH A 5 605 122 HOH HOH . G 4 HOH A 6 606 60 HOH HOH . G 4 HOH A 7 607 61 HOH HOH . G 4 HOH A 8 608 70 HOH HOH . G 4 HOH A 9 609 58 HOH HOH . G 4 HOH A 10 610 110 HOH HOH . G 4 HOH A 11 611 17 HOH HOH . G 4 HOH A 12 612 59 HOH HOH . G 4 HOH A 13 613 69 HOH HOH . G 4 HOH A 14 614 30 HOH HOH . G 4 HOH A 15 615 120 HOH HOH . G 4 HOH A 16 616 114 HOH HOH . G 4 HOH A 17 617 78 HOH HOH . G 4 HOH A 18 618 85 HOH HOH . G 4 HOH A 19 619 20 HOH HOH . G 4 HOH A 20 620 71 HOH HOH . G 4 HOH A 21 621 13 HOH HOH . G 4 HOH A 22 622 84 HOH HOH . G 4 HOH A 23 623 73 HOH HOH . G 4 HOH A 24 624 6 HOH HOH . G 4 HOH A 25 625 88 HOH HOH . G 4 HOH A 26 626 80 HOH HOH . G 4 HOH A 27 627 29 HOH HOH . G 4 HOH A 28 628 94 HOH HOH . G 4 HOH A 29 629 39 HOH HOH . G 4 HOH A 30 630 75 HOH HOH . G 4 HOH A 31 631 126 HOH HOH . G 4 HOH A 32 632 15 HOH HOH . G 4 HOH A 33 633 86 HOH HOH . G 4 HOH A 34 634 97 HOH HOH . G 4 HOH A 35 635 24 HOH HOH . G 4 HOH A 36 636 28 HOH HOH . G 4 HOH A 37 637 121 HOH HOH . G 4 HOH A 38 638 44 HOH HOH . G 4 HOH A 39 639 12 HOH HOH . G 4 HOH A 40 640 52 HOH HOH . G 4 HOH A 41 641 101 HOH HOH . G 4 HOH A 42 642 124 HOH HOH . G 4 HOH A 43 643 10 HOH HOH . G 4 HOH A 44 644 77 HOH HOH . G 4 HOH A 45 645 63 HOH HOH . G 4 HOH A 46 646 87 HOH HOH . G 4 HOH A 47 647 66 HOH HOH . G 4 HOH A 48 648 116 HOH HOH . G 4 HOH A 49 649 76 HOH HOH . G 4 HOH A 50 650 103 HOH HOH . G 4 HOH A 51 651 100 HOH HOH . G 4 HOH A 52 652 102 HOH HOH . H 4 HOH B 1 601 62 HOH HOH . H 4 HOH B 2 602 125 HOH HOH . H 4 HOH B 3 603 109 HOH HOH . H 4 HOH B 4 604 1 HOH HOH . H 4 HOH B 5 605 4 HOH HOH . H 4 HOH B 6 606 118 HOH HOH . H 4 HOH B 7 607 2 HOH HOH . H 4 HOH B 8 608 16 HOH HOH . H 4 HOH B 9 609 5 HOH HOH . H 4 HOH B 10 610 3 HOH HOH . H 4 HOH B 11 611 81 HOH HOH . H 4 HOH B 12 612 25 HOH HOH . H 4 HOH B 13 613 11 HOH HOH . H 4 HOH B 14 614 9 HOH HOH . H 4 HOH B 15 615 115 HOH HOH . H 4 HOH B 16 616 119 HOH HOH . H 4 HOH B 17 617 35 HOH HOH . H 4 HOH B 18 618 45 HOH HOH . H 4 HOH B 19 619 95 HOH HOH . H 4 HOH B 20 620 27 HOH HOH . H 4 HOH B 21 621 90 HOH HOH . H 4 HOH B 22 622 42 HOH HOH . H 4 HOH B 23 623 21 HOH HOH . H 4 HOH B 24 624 46 HOH HOH . H 4 HOH B 25 625 47 HOH HOH . H 4 HOH B 26 626 56 HOH HOH . H 4 HOH B 27 627 41 HOH HOH . H 4 HOH B 28 628 36 HOH HOH . H 4 HOH B 29 629 19 HOH HOH . H 4 HOH B 30 630 112 HOH HOH . H 4 HOH B 31 631 104 HOH HOH . H 4 HOH B 32 632 92 HOH HOH . H 4 HOH B 33 633 98 HOH HOH . H 4 HOH B 34 634 67 HOH HOH . H 4 HOH B 35 635 91 HOH HOH . H 4 HOH B 36 636 113 HOH HOH . H 4 HOH B 37 637 68 HOH HOH . H 4 HOH B 38 638 117 HOH HOH . H 4 HOH B 39 639 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 21.017 -3.774 150.144 1 57.23 ? CHA HEM 501 B 1 HETATM 2 C CHB HEM . . . E 2 23.093 -7.951 151.533 1 57.04 ? CHB HEM 501 B 1 HETATM 3 C CHC HEM . . . E 2 23.873 -9.122 146.964 1 56.93 ? CHC HEM 501 B 1 HETATM 4 C CHD HEM . . . E 2 22.071 -4.87 145.547 1 57.2 ? CHD HEM 501 B 1 HETATM 5 C C1A HEM . . . E 2 21.493 -4.82 150.944 1 56.78 ? C1A HEM 501 B 1 HETATM 6 C C2A HEM . . . E 2 21.558 -4.889 152.39 1 57.23 ? C2A HEM 501 B 1 HETATM 7 C C3A HEM . . . E 2 22.128 -6.046 152.754 1 57.14 ? C3A HEM 501 B 1 HETATM 8 C C4A HEM . . . E 2 22.465 -6.729 151.557 1 56.6 ? C4A HEM 501 B 1 HETATM 9 C CMA HEM . . . E 2 22.378 -6.467 154.181 1 58.35 ? CMA HEM 501 B 1 HETATM 10 C CAA HEM . . . E 2 21.113 -3.943 153.431 1 58.76 ? CAA HEM 501 B 1 HETATM 11 C CBA HEM . . . E 2 21.279 -2.543 152.909 1 60.37 ? CBA HEM 501 B 1 HETATM 12 C CGA HEM . . . E 2 22.634 -1.963 152.613 1 61.75 ? CGA HEM 501 B 1 HETATM 13 O O1A HEM . . . E 2 23.515 -2.449 151.884 1 63.16 ? O1A HEM 501 B 1 HETATM 14 O O2A HEM . . . E 2 22.767 -0.788 153.209 1 62.37 ? O2A HEM 501 B 1 HETATM 15 C C1B HEM . . . E 2 23.435 -8.662 150.384 1 56.57 ? C1B HEM 501 B 1 HETATM 16 C C2B HEM . . . E 2 24.013 -9.979 150.448 1 56.71 ? C2B HEM 501 B 1 HETATM 17 C C3B HEM . . . E 2 24.22 -10.349 149.176 1 56.96 ? C3B HEM 501 B 1 HETATM 18 C C4B HEM . . . E 2 23.763 -9.18 148.321 1 56.49 ? C4B HEM 501 B 1 HETATM 19 C CMB HEM . . . E 2 24.333 -10.822 151.674 1 58.46 ? CMB HEM 501 B 1 HETATM 20 C CAB HEM . . . E 2 24.839 -11.653 148.746 1 58.06 ? CAB HEM 501 B 1 HETATM 21 C CBB HEM . . . E 2 26.021 -12.088 149.189 1 57.89 ? CBB HEM 501 B 1 HETATM 22 C C1C HEM . . . E 2 23.49 -8.018 146.215 1 56.2 ? C1C HEM 501 B 1 HETATM 23 C C2C HEM . . . E 2 23.828 -7.872 144.828 1 56.75 ? C2C HEM 501 B 1 HETATM 24 C C3C HEM . . . E 2 23.386 -6.651 144.417 1 56.82 ? C3C HEM 501 B 1 HETATM 25 C C4C HEM . . . E 2 22.756 -6.061 145.576 1 56.54 ? C4C HEM 501 B 1 HETATM 26 C CMC HEM . . . E 2 24.517 -8.899 143.957 1 58.21 ? CMC HEM 501 B 1 HETATM 27 C CAC HEM . . . E 2 23.482 -6.116 143.046 1 57.57 ? CAC HEM 501 B 1 HETATM 28 C CBC HEM . . . E 2 24.154 -5.015 142.811 1 59.42 ? CBC HEM 501 B 1 HETATM 29 C C1D HEM . . . E 2 21.499 -4.304 146.678 1 56.79 ? C1D HEM 501 B 1 HETATM 30 C C2D HEM . . . E 2 20.83 -2.972 146.623 1 57.19 ? C2D HEM 501 B 1 HETATM 31 C C3D HEM . . . E 2 20.49 -2.683 147.931 1 57.21 ? C3D HEM 501 B 1 HETATM 32 C C4D HEM . . . E 2 20.967 -3.824 148.738 1 56.81 ? C4D HEM 501 B 1 HETATM 33 C CMD HEM . . . E 2 20.67 -2.157 145.332 1 58.72 ? CMD HEM 501 B 1 HETATM 34 C CAD HEM . . . E 2 19.82 -1.465 148.548 1 58.04 ? CAD HEM 501 B 1 HETATM 35 C CBD HEM . . . E 2 18.357 -1.703 148.924 1 58.61 ? CBD HEM 501 B 1 HETATM 36 C CGD HEM . . . E 2 17.443 -1.799 147.691 1 59.27 ? CGD HEM 501 B 1 HETATM 37 O O1D HEM . . . E 2 16.636 -2.737 147.589 1 59.79 ? O1D HEM 501 B 1 HETATM 38 O O2D HEM . . . E 2 17.499 -0.846 146.71 1 59.95 ? O2D HEM 501 B 1 HETATM 39 N NA HEM . . . E 2 22.127 -5.976 150.43 1 56.58 ? NA HEM 501 B 1 HETATM 40 N NB HEM . . . E 2 23.273 -8.183 149.111 1 56.16 ? NB HEM 501 B 1 HETATM 41 N NC HEM . . . E 2 22.913 -6.864 146.696 1 56.32 ? NC HEM 501 B 1 HETATM 42 N ND HEM . . . E 2 21.582 -4.766 147.944 1 56.46 ? ND HEM 501 B 1 HETATM 43 FE FE HEM . . . E 2 22.57 -6.37 148.577 1 56.36 ? FE HEM 501 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #