data_6O3I # _model_server_result.job_id NSyWsWDKiOA8fMochTSOuQ _model_server_result.datetime_utc '2024-11-14 20:31:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6O3I # _exptl.entry_id 6O3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.37 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description trans-4-{(1R)-2-[(5S)-6-fluoro-5H-imidazo[5,1-a]isoindol-5-yl]-1-hydroxyethyl}cyclohexan-1-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O3I _cell.length_a 85.062 _cell.length_b 90.224 _cell.length_c 130.237 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 323 A CYS 308 1_555 B SG CYS 323 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc1 A NE2 HIS 361 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 D N10 LKP . A LKP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 B NE2 HIS 361 B HIS 346 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc4 E FE HEM . B HEM 501 1_555 F N10 LKP . B LKP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? # _chem_comp.formula 'C18 H21 F N2 O2' _chem_comp.formula_weight 316.37 _chem_comp.id LKP _chem_comp.mon_nstd_flag . _chem_comp.name trans-4-{(1R)-2-[(5S)-6-fluoro-5H-imidazo[5,1-a]isoindol-5-yl]-1-hydroxyethyl}cyclohexan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Navoximod # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 LKP doub 276 n y C1 C2 LKP sing 277 n y C6 C5 LKP sing 278 n y C2 C3 LKP doub 279 n y C5 C7 LKP sing 280 n n C5 C4 LKP doub 281 n y C11 C7 LKP doub 282 n y C11 N10 LKP sing 283 n y C7 N8 LKP sing 284 n y C3 C4 LKP sing 285 n y C3 F27 LKP sing 286 n n C4 C12 LKP sing 287 n n N10 C9 LKP doub 288 n y N8 C12 LKP sing 289 n n N8 C9 LKP sing 290 n y C12 C14 LKP sing 291 n n C14 C15 LKP sing 292 n n C15 O17 LKP sing 293 n n C15 C18 LKP sing 294 n n C20 C18 LKP sing 295 n n C20 C21 LKP sing 296 n n C18 C25 LKP sing 297 n n C25 C24 LKP sing 298 n n C21 C22 LKP sing 299 n n C22 C24 LKP sing 300 n n C22 O26 LKP sing 301 n n C14 H1 LKP sing 302 n n C14 H2 LKP sing 303 n n C6 H3 LKP sing 304 n n C11 H4 LKP sing 305 n n C9 H5 LKP sing 306 n n C12 H13 LKP sing 307 n n C1 H6 LKP sing 308 n n C2 H7 LKP sing 309 n n C15 H16 LKP sing 310 n n O17 H8 LKP sing 311 n n C18 H19 LKP sing 312 n n C20 H9 LKP sing 313 n n C20 H10 LKP sing 314 n n C21 H11 LKP sing 315 n n C21 H12 LKP sing 316 n n C22 H23 LKP sing 317 n n C24 H14 LKP sing 318 n n C24 H15 LKP sing 319 n n C25 H17 LKP sing 320 n n C25 H18 LKP sing 321 n n O26 H20 LKP sing 322 n n # _atom_sites.entry_id 6O3I _atom_sites.fract_transf_matrix[1][1] 0.011756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 404 HEM HEM . D 3 LKP A 1 502 1 LKP DRG . E 2 HEM B 1 501 404 HEM HEM . F 3 LKP B 1 502 1 LKP DRG . G 4 HOH A 1 601 72 HOH HOH . G 4 HOH A 2 602 8 HOH HOH . G 4 HOH A 3 603 74 HOH HOH . G 4 HOH A 4 604 106 HOH HOH . G 4 HOH A 5 605 122 HOH HOH . G 4 HOH A 6 606 60 HOH HOH . G 4 HOH A 7 607 61 HOH HOH . G 4 HOH A 8 608 70 HOH HOH . G 4 HOH A 9 609 58 HOH HOH . G 4 HOH A 10 610 110 HOH HOH . G 4 HOH A 11 611 17 HOH HOH . G 4 HOH A 12 612 59 HOH HOH . G 4 HOH A 13 613 69 HOH HOH . G 4 HOH A 14 614 30 HOH HOH . G 4 HOH A 15 615 120 HOH HOH . G 4 HOH A 16 616 114 HOH HOH . G 4 HOH A 17 617 78 HOH HOH . G 4 HOH A 18 618 85 HOH HOH . G 4 HOH A 19 619 20 HOH HOH . G 4 HOH A 20 620 71 HOH HOH . G 4 HOH A 21 621 13 HOH HOH . G 4 HOH A 22 622 84 HOH HOH . G 4 HOH A 23 623 73 HOH HOH . G 4 HOH A 24 624 6 HOH HOH . G 4 HOH A 25 625 88 HOH HOH . G 4 HOH A 26 626 80 HOH HOH . G 4 HOH A 27 627 29 HOH HOH . G 4 HOH A 28 628 94 HOH HOH . G 4 HOH A 29 629 39 HOH HOH . G 4 HOH A 30 630 75 HOH HOH . G 4 HOH A 31 631 126 HOH HOH . G 4 HOH A 32 632 15 HOH HOH . G 4 HOH A 33 633 86 HOH HOH . G 4 HOH A 34 634 97 HOH HOH . G 4 HOH A 35 635 24 HOH HOH . G 4 HOH A 36 636 28 HOH HOH . G 4 HOH A 37 637 121 HOH HOH . G 4 HOH A 38 638 44 HOH HOH . G 4 HOH A 39 639 12 HOH HOH . G 4 HOH A 40 640 52 HOH HOH . G 4 HOH A 41 641 101 HOH HOH . G 4 HOH A 42 642 124 HOH HOH . G 4 HOH A 43 643 10 HOH HOH . G 4 HOH A 44 644 77 HOH HOH . G 4 HOH A 45 645 63 HOH HOH . G 4 HOH A 46 646 87 HOH HOH . G 4 HOH A 47 647 66 HOH HOH . G 4 HOH A 48 648 116 HOH HOH . G 4 HOH A 49 649 76 HOH HOH . G 4 HOH A 50 650 103 HOH HOH . G 4 HOH A 51 651 100 HOH HOH . G 4 HOH A 52 652 102 HOH HOH . H 4 HOH B 1 601 62 HOH HOH . H 4 HOH B 2 602 125 HOH HOH . H 4 HOH B 3 603 109 HOH HOH . H 4 HOH B 4 604 1 HOH HOH . H 4 HOH B 5 605 4 HOH HOH . H 4 HOH B 6 606 118 HOH HOH . H 4 HOH B 7 607 2 HOH HOH . H 4 HOH B 8 608 16 HOH HOH . H 4 HOH B 9 609 5 HOH HOH . H 4 HOH B 10 610 3 HOH HOH . H 4 HOH B 11 611 81 HOH HOH . H 4 HOH B 12 612 25 HOH HOH . H 4 HOH B 13 613 11 HOH HOH . H 4 HOH B 14 614 9 HOH HOH . H 4 HOH B 15 615 115 HOH HOH . H 4 HOH B 16 616 119 HOH HOH . H 4 HOH B 17 617 35 HOH HOH . H 4 HOH B 18 618 45 HOH HOH . H 4 HOH B 19 619 95 HOH HOH . H 4 HOH B 20 620 27 HOH HOH . H 4 HOH B 21 621 90 HOH HOH . H 4 HOH B 22 622 42 HOH HOH . H 4 HOH B 23 623 21 HOH HOH . H 4 HOH B 24 624 46 HOH HOH . H 4 HOH B 25 625 47 HOH HOH . H 4 HOH B 26 626 56 HOH HOH . H 4 HOH B 27 627 41 HOH HOH . H 4 HOH B 28 628 36 HOH HOH . H 4 HOH B 29 629 19 HOH HOH . H 4 HOH B 30 630 112 HOH HOH . H 4 HOH B 31 631 104 HOH HOH . H 4 HOH B 32 632 92 HOH HOH . H 4 HOH B 33 633 98 HOH HOH . H 4 HOH B 34 634 67 HOH HOH . H 4 HOH B 35 635 91 HOH HOH . H 4 HOH B 36 636 113 HOH HOH . H 4 HOH B 37 637 68 HOH HOH . H 4 HOH B 38 638 117 HOH HOH . H 4 HOH B 39 639 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 LKP . . . D 3 9.774 28.441 161.65 1 49.09 ? C4 LKP 502 A 1 HETATM 2 C C14 LKP . . . D 3 10.725 27.788 163.926 1 46.62 ? C14 LKP 502 A 1 HETATM 3 C C5 LKP . . . D 3 9.98 29.683 161.033 1 49.16 ? C5 LKP 502 A 1 HETATM 4 C C6 LKP . . . D 3 8.965 30.289 160.286 1 46.37 ? C6 LKP 502 A 1 HETATM 5 C C11 LKP . . . D 3 12.212 31.21 161.394 1 48.4 ? C11 LKP 502 A 1 HETATM 6 C C7 LKP . . . D 3 11.302 30.183 161.408 1 47.46 ? C7 LKP 502 A 1 HETATM 7 C C9 LKP . . . D 3 13.088 29.672 162.577 1 47.52 ? C9 LKP 502 A 1 HETATM 8 C C12 LKP . . . D 3 10.996 28.049 162.439 1 46.94 ? C12 LKP 502 A 1 HETATM 9 C C3 LKP . . . D 3 8.526 27.864 161.484 1 48.17 ? C3 LKP 502 A 1 HETATM 10 C C1 LKP . . . D 3 7.728 29.674 160.182 1 47.2 ? C1 LKP 502 A 1 HETATM 11 C C2 LKP . . . D 3 7.501 28.444 160.78 1 46.58 ? C2 LKP 502 A 1 HETATM 12 N N8 LKP . . . D 3 11.881 29.174 162.178 1 46.1 ? N8 LKP 502 A 1 HETATM 13 N N10 LKP . . . D 3 13.328 30.88 162.128 1 47.36 ? N10 LKP 502 A 1 HETATM 14 C C15 LKP . . . D 3 11.708 26.863 164.629 1 47.62 ? C15 LKP 502 A 1 HETATM 15 O O17 LKP . . . D 3 12.984 27.501 164.664 1 44.67 ? O17 LKP 502 A 1 HETATM 16 C C18 LKP . . . D 3 11.252 26.399 166.014 1 52.82 ? C18 LKP 502 A 1 HETATM 17 C C20 LKP . . . D 3 9.967 25.566 165.938 1 58.35 ? C20 LKP 502 A 1 HETATM 18 C C21 LKP . . . D 3 9.523 24.992 167.289 1 61.39 ? C21 LKP 502 A 1 HETATM 19 C C22 LKP . . . D 3 10.636 24.201 167.944 1 62.66 ? C22 LKP 502 A 1 HETATM 20 C C24 LKP . . . D 3 11.89 25.04 168.086 1 60.06 ? C24 LKP 502 A 1 HETATM 21 C C25 LKP . . . D 3 12.344 25.598 166.733 1 56.54 ? C25 LKP 502 A 1 HETATM 22 O O26 LKP . . . D 3 10.211 23.724 169.228 1 64.83 ? O26 LKP 502 A 1 HETATM 23 F F27 LKP . . . D 3 8.305 26.669 162.069 1 53.99 ? F27 LKP 502 A 1 HETATM 24 H H13 LKP . . . D 3 11.44 27.161 161.997 1 47.37 ? H13 LKP 502 A 1 HETATM 25 H H16 LKP . . . D 3 11.935 25.999 164.009 1 47.74 ? H16 LKP 502 A 1 HETATM 26 H H19 LKP . . . D 3 11.043 27.278 166.622 1 52.38 ? H19 LKP 502 A 1 HETATM 27 H H23 LKP . . . D 3 10.848 23.333 167.321 1 62.86 ? H23 LKP 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 508 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #