data_6O3J # _model_server_result.job_id AawImVqgTAcTso_DYDgtJw _model_server_result.datetime_utc '2024-11-22 21:34:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o3j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 6O3J # _exptl.entry_id 6O3J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.49 _cell.angle_gamma 90 _cell.entry_id 6O3J _cell.length_a 181.859 _cell.length_b 43.931 _cell.length_c 154.526 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O3J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G 1 1 C,D,F,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.212 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.244 ? disulf ? disulf6 B SG CYS 151 H CYS 142 1_555 B SG CYS 207 H CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 B SG CYS 151 H CYS 142 1_555 B SG CYS 207 H CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 C SG CYS 23 B CYS 23 1_555 C SG CYS 89 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 C SG CYS 135 B CYS 134 1_555 C SG CYS 195 B CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.041 ? disulf ? disulf10 C SG CYS 135 B CYS 134 1_555 C SG CYS 195 B CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 D SG CYS 22 A CYS 22 1_555 D SG CYS 96 A CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.231 ? disulf ? disulf12 D SG CYS 22 A CYS 22 1_555 D SG CYS 96 A CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.217 ? disulf ? disulf13 D SG CYS 151 A CYS 142 1_555 D SG CYS 207 A CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 D SG CYS 151 A CYS 142 1_555 D SG CYS 207 A CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 287 n n C1 H11 MPD sing 288 n n C1 H12 MPD sing 289 n n C1 H13 MPD sing 290 n n C2 O2 MPD sing 291 n n C2 CM MPD sing 292 n n C2 C3 MPD sing 293 n n O2 HO2 MPD sing 294 n n CM HM1 MPD sing 295 n n CM HM2 MPD sing 296 n n CM HM3 MPD sing 297 n n C3 C4 MPD sing 298 n n C3 H31 MPD sing 299 n n C3 H32 MPD sing 300 n n C4 O4 MPD sing 301 n n C4 C5 MPD sing 302 n n C4 H4 MPD sing 303 n n O4 HO4 MPD sing 304 n n C5 H51 MPD sing 305 n n C5 H52 MPD sing 306 n n C5 H53 MPD sing 307 n n # _atom_sites.entry_id 6O3J _atom_sites.fract_transf_matrix[1][1] 0.005499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000239 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 44E H 1 301 2 44E 44E . H 4 44E A 1 301 1 44E 44E . I 5 MPD A 1 302 1 MPD MPD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . I 5 -48.668 -18.535 62.042 1 81.32 ? C1 MPD 302 A 1 HETATM 2 C C2 MPD . . . I 5 -47.881 -17.79 63.116 1 89.43 ? C2 MPD 302 A 1 HETATM 3 O O2 MPD . . . I 5 -47.325 -16.575 62.544 1 85.21 ? O2 MPD 302 A 1 HETATM 4 C CM MPD . . . I 5 -48.804 -17.417 64.27 1 65.93 ? CM MPD 302 A 1 HETATM 5 C C3 MPD . . . I 5 -46.763 -18.639 63.72 1 106.51 ? C3 MPD 302 A 1 HETATM 6 C C4 MPD . . . I 5 -46.658 -20.065 63.191 1 90.34 ? C4 MPD 302 A 1 HETATM 7 O O4 MPD . . . I 5 -45.296 -20.403 63.046 1 100 ? O4 MPD 302 A 1 HETATM 8 C C5 MPD . . . I 5 -47.329 -21.036 64.158 1 82.05 ? C5 MPD 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #