data_6O3U # _model_server_result.job_id hER7Ab1Zcb37VlHqpD0QEQ _model_server_result.datetime_utc '2024-11-08 04:15:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":301}' # _entry.id 6O3U # _exptl.entry_id 6O3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O3U _cell.length_a 276.2 _cell.length_b 276.2 _cell.length_c 276.2 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,N,O,P,OA,PA 1 1 C,D,Q,R,S,T,U,V,W,X,Y,Z,QA,RA 2 1 E,F,AA,BA,CA,DA,EA,FA,GA,SA,TA 3 1 G,H,HA,IA,JA,KA,LA,MA,NA,UA,VA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 AA N N ? 3 BA N N ? 3 HA N N ? 3 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.228 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.241 ? disulf ? disulf6 B SG CYS 151 H CYS 142 1_555 B SG CYS 207 H CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 B SG CYS 151 H CYS 142 1_555 B SG CYS 207 H CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 C SG CYS 23 A CYS 23 1_555 C SG CYS 89 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 C SG CYS 135 A CYS 134 1_555 C SG CYS 195 A CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 C SG CYS 135 A CYS 134 1_555 C SG CYS 195 A CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 D SG CYS 22 B CYS 22 1_555 D SG CYS 96 B CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.275 ? disulf ? disulf12 D SG CYS 22 B CYS 22 1_555 D SG CYS 96 B CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.253 ? disulf ? disulf13 D SG CYS 151 B CYS 142 1_555 D SG CYS 207 B CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.025 ? disulf ? disulf14 D SG CYS 151 B CYS 142 1_555 D SG CYS 207 B CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.038 ? disulf ? disulf15 E SG CYS 23 C CYS 23 1_555 E SG CYS 89 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 E SG CYS 135 C CYS 134 1_555 E SG CYS 195 C CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.027 ? disulf ? disulf17 E SG CYS 135 C CYS 134 1_555 E SG CYS 195 C CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.041 ? disulf ? disulf18 F SG CYS 22 D CYS 22 1_555 F SG CYS 96 D CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.279 ? disulf ? disulf19 F SG CYS 22 D CYS 22 1_555 F SG CYS 96 D CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.219 ? disulf ? disulf20 F SG CYS 151 D CYS 142 1_555 F SG CYS 207 D CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.027 ? disulf ? disulf21 F SG CYS 151 D CYS 142 1_555 F SG CYS 207 D CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.039 ? disulf ? disulf22 G SG CYS 23 E CYS 23 1_555 G SG CYS 89 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf23 G SG CYS 135 E CYS 134 1_555 G SG CYS 195 E CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.041 ? disulf ? disulf24 G SG CYS 135 E CYS 134 1_555 G SG CYS 195 E CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.027 ? disulf ? disulf25 H SG CYS 22 F CYS 22 1_555 H SG CYS 96 F CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.212 ? disulf ? disulf26 H SG CYS 22 F CYS 22 1_555 H SG CYS 96 F CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.229 ? disulf ? disulf27 H SG CYS 151 F CYS 142 1_555 H SG CYS 207 F CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.026 ? disulf ? disulf28 H SG CYS 151 F CYS 142 1_555 H SG CYS 207 F CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 181 n n C1 C2 GOL sing 182 n n C1 H11 GOL sing 183 n n C1 H12 GOL sing 184 n n O1 HO1 GOL sing 185 n n C2 O2 GOL sing 186 n n C2 C3 GOL sing 187 n n C2 H2 GOL sing 188 n n O2 HO2 GOL sing 189 n n C3 O3 GOL sing 190 n n C3 H31 GOL sing 191 n n C3 H32 GOL sing 192 n n O3 HO3 GOL sing 193 n n # _atom_sites.entry_id 6O3U _atom_sites.fract_transf_matrix[1][1] 0.003621 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GOL L 1 301 4 GOL GOL . J 3 GOL L 1 302 11 GOL GOL . K 3 GOL H 1 301 5 GOL GOL . L 4 SO4 H 1 302 6 SO4 SO4 . M 4 SO4 H 1 303 7 SO4 SO4 . N 4 SO4 H 1 304 14 SO4 SO4 . O 5 44E H 1 305 1 44E 44E . P 5 44E H 1 306 8 44E 44E . Q 3 GOL A 1 301 6 GOL GOL . R 3 GOL A 1 302 7 GOL GOL . S 3 GOL A 1 303 12 GOL GOL . T 4 SO4 A 1 304 15 SO4 SO4 . U 4 SO4 B 1 301 2 SO4 SO4 . V 4 SO4 B 1 302 8 SO4 SO4 . W 4 SO4 B 1 303 9 SO4 SO4 . X 4 SO4 B 1 304 10 SO4 SO4 . Y 5 44E B 1 305 4 44E 44E . Z 5 44E B 1 306 7 44E 44E . AA 3 GOL C 1 301 13 GOL GOL . BA 3 GOL D 1 301 9 GOL GOL . CA 4 SO4 D 1 302 3 SO4 SO4 . DA 4 SO4 D 1 303 11 SO4 SO4 . EA 4 SO4 D 1 304 13 SO4 SO4 . FA 5 44E D 1 305 6 44E 44E . GA 5 44E D 1 306 9 44E 44E . HA 3 GOL E 1 301 3 GOL GOL . IA 3 GOL F 1 301 10 GOL GOL . JA 4 SO4 F 1 302 5 SO4 SO4 . KA 4 SO4 F 1 303 12 SO4 SO4 . LA 4 SO4 F 1 304 16 SO4 SO4 . MA 5 44E F 1 305 2 44E 44E . NA 5 44E F 1 306 3 44E 44E . OA 6 HOH L 1 401 18 HOH HOH . OA 6 HOH L 2 402 40 HOH HOH . OA 6 HOH L 3 403 15 HOH HOH . OA 6 HOH L 4 404 14 HOH HOH . OA 6 HOH L 5 405 12 HOH HOH . OA 6 HOH L 6 406 13 HOH HOH . OA 6 HOH L 7 407 19 HOH HOH . PA 6 HOH H 1 401 23 HOH HOH . PA 6 HOH H 2 402 22 HOH HOH . PA 6 HOH H 3 403 24 HOH HOH . PA 6 HOH H 4 404 1 HOH HOH . PA 6 HOH H 5 405 21 HOH HOH . PA 6 HOH H 6 406 16 HOH HOH . QA 6 HOH A 1 401 25 HOH HOH . QA 6 HOH A 2 402 26 HOH HOH . QA 6 HOH A 3 403 27 HOH HOH . QA 6 HOH A 4 404 28 HOH HOH . RA 6 HOH B 1 401 29 HOH HOH . SA 6 HOH C 1 401 5 HOH HOH . SA 6 HOH C 2 402 6 HOH HOH . SA 6 HOH C 3 403 4 HOH HOH . SA 6 HOH C 4 404 32 HOH HOH . SA 6 HOH C 5 405 38 HOH HOH . TA 6 HOH D 1 401 33 HOH HOH . TA 6 HOH D 2 402 30 HOH HOH . TA 6 HOH D 3 403 8 HOH HOH . TA 6 HOH D 4 404 34 HOH HOH . TA 6 HOH D 5 405 31 HOH HOH . TA 6 HOH D 6 406 9 HOH HOH . UA 6 HOH E 1 401 36 HOH HOH . UA 6 HOH E 2 402 10 HOH HOH . UA 6 HOH E 3 403 35 HOH HOH . VA 6 HOH F 1 401 39 HOH HOH . VA 6 HOH F 2 402 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Q 3 -32.73 52.544 3.398 1 122.6 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . Q 3 -33.572 53.045 4.389 1 114.58 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . Q 3 -32.649 53.619 2.286 1 134.15 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . Q 3 -31.433 54.295 2.298 1 132.85 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . Q 3 -32.905 52.851 0.958 1 126.15 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . Q 3 -31.686 52.768 0.285 1 115.89 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #