data_6O3Z # _model_server_result.job_id 94o1CvAIcAnUo29bKz2dhw _model_server_result.datetime_utc '2025-06-28 16:27:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6O3Z # _exptl.entry_id 6O3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 462.559 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-cyano-N-(3-{[(3S)-4-(cyclopentanecarbonyl)-3-methylpiperazin-1-yl]methyl}-5-fluoro-2-methylphenyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O3Z _cell.length_a 61.136 _cell.length_b 61.136 _cell.length_c 155.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H31 F N4 O2' _chem_comp.formula_weight 462.559 _chem_comp.id LKY _chem_comp.mon_nstd_flag . _chem_comp.name 3-cyano-N-(3-{[(3S)-4-(cyclopentanecarbonyl)-3-methylpiperazin-1-yl]methyl}-5-fluoro-2-methylphenyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C31 LKY doub 203 n y C30 C29 LKY sing 204 n y C31 C32 LKY sing 205 n y C29 C28 LKY doub 206 n y C32 C33 LKY sing 207 n n C32 C35 LKY doub 208 n y C33 N34 LKY trip 209 n n C2 C1 LKY sing 210 n n C28 C35 LKY sing 211 n y C28 C26 LKY sing 212 n n C15 C14 LKY sing 213 n n C15 C11 LKY sing 214 n n C7 N8 LKY sing 215 n n C7 C6 LKY sing 216 n n C18 C16 LKY sing 217 n n N25 C26 LKY sing 218 n n N25 C24 LKY sing 219 n n C14 C13 LKY sing 220 n n C26 O27 LKY doub 221 n n N8 C16 LKY sing 222 n n N8 C9 LKY sing 223 n n C1 C24 LKY doub 224 n y C1 C3 LKY sing 225 n y C6 N5 LKY sing 226 n n C11 C9 LKY sing 227 n n C11 C12 LKY sing 228 n n C19 C16 LKY sing 229 n n C19 N5 LKY sing 230 n n C24 C23 LKY sing 231 n y C9 O10 LKY doub 232 n n C4 N5 LKY sing 233 n n C4 C3 LKY sing 234 n n C13 C12 LKY sing 235 n n C3 C20 LKY doub 236 n y C23 C21 LKY doub 237 n y C20 C21 LKY sing 238 n y C21 F22 LKY sing 239 n n C11 H1 LKY sing 240 n n C12 H2 LKY sing 241 n n C13 H3 LKY sing 242 n n C14 H4 LKY sing 243 n n C15 H5 LKY sing 244 n n C16 H6 LKY sing 245 n n C18 H7 LKY sing 246 n n C18 H8 LKY sing 247 n n C18 H9 LKY sing 248 n n C19 H10 LKY sing 249 n n C19 H11 LKY sing 250 n n C2 H12 LKY sing 251 n n C2 H13 LKY sing 252 n n C2 H14 LKY sing 253 n n C20 H15 LKY sing 254 n n C23 H16 LKY sing 255 n n C29 H17 LKY sing 256 n n C30 H18 LKY sing 257 n n C31 H19 LKY sing 258 n n C35 H20 LKY sing 259 n n C4 H21 LKY sing 260 n n C4 H22 LKY sing 261 n n C6 H23 LKY sing 262 n n C6 H24 LKY sing 263 n n C7 H25 LKY sing 264 n n C7 H26 LKY sing 265 n n N25 H27 LKY sing 266 n n C12 H29 LKY sing 267 n n C13 H30 LKY sing 268 n n C14 H31 LKY sing 269 n n C15 H32 LKY sing 270 n n # _atom_sites.entry_id 6O3Z _atom_sites.fract_transf_matrix[1][1] 0.016357 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LKY A 1 601 1 LKY UNL . C 3 EDO A 1 602 1 EDO EDO . D 3 EDO A 1 603 2 EDO EDO . E 3 EDO A 1 604 3 EDO EDO . F 3 EDO A 1 605 4 EDO EDO . G 3 EDO A 1 606 5 EDO EDO . H 3 EDO A 1 607 6 EDO EDO . I 4 HOH A 1 701 49 HOH HOH . I 4 HOH A 2 702 2 HOH HOH . I 4 HOH A 3 703 56 HOH HOH . I 4 HOH A 4 704 36 HOH HOH . I 4 HOH A 5 705 63 HOH HOH . I 4 HOH A 6 706 39 HOH HOH . I 4 HOH A 7 707 84 HOH HOH . I 4 HOH A 8 708 30 HOH HOH . I 4 HOH A 9 709 80 HOH HOH . I 4 HOH A 10 710 59 HOH HOH . I 4 HOH A 11 711 29 HOH HOH . I 4 HOH A 12 712 81 HOH HOH . I 4 HOH A 13 713 74 HOH HOH . I 4 HOH A 14 714 20 HOH HOH . I 4 HOH A 15 715 11 HOH HOH . I 4 HOH A 16 716 14 HOH HOH . I 4 HOH A 17 717 23 HOH HOH . I 4 HOH A 18 718 52 HOH HOH . I 4 HOH A 19 719 64 HOH HOH . I 4 HOH A 20 720 58 HOH HOH . I 4 HOH A 21 721 7 HOH HOH . I 4 HOH A 22 722 10 HOH HOH . I 4 HOH A 23 723 51 HOH HOH . I 4 HOH A 24 724 76 HOH HOH . I 4 HOH A 25 725 85 HOH HOH . I 4 HOH A 26 726 47 HOH HOH . I 4 HOH A 27 727 8 HOH HOH . I 4 HOH A 28 728 43 HOH HOH . I 4 HOH A 29 729 13 HOH HOH . I 4 HOH A 30 730 90 HOH HOH . I 4 HOH A 31 731 35 HOH HOH . I 4 HOH A 32 732 61 HOH HOH . I 4 HOH A 33 733 34 HOH HOH . I 4 HOH A 34 734 68 HOH HOH . I 4 HOH A 35 735 75 HOH HOH . I 4 HOH A 36 736 24 HOH HOH . I 4 HOH A 37 737 4 HOH HOH . I 4 HOH A 38 738 69 HOH HOH . I 4 HOH A 39 739 79 HOH HOH . I 4 HOH A 40 740 6 HOH HOH . I 4 HOH A 41 741 53 HOH HOH . I 4 HOH A 42 742 1 HOH HOH . I 4 HOH A 43 743 57 HOH HOH . I 4 HOH A 44 744 73 HOH HOH . I 4 HOH A 45 745 87 HOH HOH . I 4 HOH A 46 746 5 HOH HOH . I 4 HOH A 47 747 45 HOH HOH . I 4 HOH A 48 748 27 HOH HOH . I 4 HOH A 49 749 77 HOH HOH . I 4 HOH A 50 750 65 HOH HOH . I 4 HOH A 51 751 17 HOH HOH . I 4 HOH A 52 752 46 HOH HOH . I 4 HOH A 53 753 71 HOH HOH . I 4 HOH A 54 754 15 HOH HOH . I 4 HOH A 55 755 40 HOH HOH . I 4 HOH A 56 756 3 HOH HOH . I 4 HOH A 57 757 37 HOH HOH . I 4 HOH A 58 758 88 HOH HOH . I 4 HOH A 59 759 12 HOH HOH . I 4 HOH A 60 760 62 HOH HOH . I 4 HOH A 61 761 16 HOH HOH . I 4 HOH A 62 762 93 HOH HOH . I 4 HOH A 63 763 32 HOH HOH . I 4 HOH A 64 764 38 HOH HOH . I 4 HOH A 65 765 18 HOH HOH . I 4 HOH A 66 766 19 HOH HOH . I 4 HOH A 67 767 25 HOH HOH . I 4 HOH A 68 768 72 HOH HOH . I 4 HOH A 69 769 9 HOH HOH . I 4 HOH A 70 770 78 HOH HOH . I 4 HOH A 71 771 91 HOH HOH . I 4 HOH A 72 772 67 HOH HOH . I 4 HOH A 73 773 89 HOH HOH . I 4 HOH A 74 774 22 HOH HOH . I 4 HOH A 75 775 83 HOH HOH . I 4 HOH A 76 776 44 HOH HOH . I 4 HOH A 77 777 33 HOH HOH . I 4 HOH A 78 778 94 HOH HOH . I 4 HOH A 79 779 86 HOH HOH . I 4 HOH A 80 780 66 HOH HOH . I 4 HOH A 81 781 48 HOH HOH . I 4 HOH A 82 782 54 HOH HOH . I 4 HOH A 83 783 60 HOH HOH . I 4 HOH A 84 784 28 HOH HOH . I 4 HOH A 85 785 42 HOH HOH . I 4 HOH A 86 786 70 HOH HOH . I 4 HOH A 87 787 41 HOH HOH . I 4 HOH A 88 788 82 HOH HOH . I 4 HOH A 89 789 31 HOH HOH . I 4 HOH A 90 790 50 HOH HOH . I 4 HOH A 91 791 55 HOH HOH . I 4 HOH A 92 792 21 HOH HOH . I 4 HOH A 93 793 26 HOH HOH . I 4 HOH A 94 794 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LKY . . . B 2 4.748 -28.121 14.867 1 25.89 ? C1 LKY 601 A 1 HETATM 2 C C11 LKY . . . B 2 11.504 -24.645 14.945 1 27.11 ? C11 LKY 601 A 1 HETATM 3 C C12 LKY . . . B 2 12.412 -24.309 16.108 1 29.69 ? C12 LKY 601 A 1 HETATM 4 C C13 LKY . . . B 2 13.222 -23.093 15.738 1 28.19 ? C13 LKY 601 A 1 HETATM 5 C C14 LKY . . . B 2 12.989 -22.814 14.273 1 28.09 ? C14 LKY 601 A 1 HETATM 6 C C15 LKY . . . B 2 11.87 -23.718 13.811 1 29.42 ? C15 LKY 601 A 1 HETATM 7 C C16 LKY . . . B 2 7.786 -24.973 15.139 1 31.85 ? C16 LKY 601 A 1 HETATM 8 C C18 LKY . . . B 2 7.147 -24.01 14.168 1 29.01 ? C18 LKY 601 A 1 HETATM 9 C C19 LKY . . . B 2 7.045 -26.271 15.007 1 27.79 ? C19 LKY 601 A 1 HETATM 10 C C2 LKY . . . B 2 5.191 -27.931 13.46 1 16.1 ? C2 LKY 601 A 1 HETATM 11 C C20 LKY . . . B 2 5.298 -28.633 17.137 1 18.43 ? C20 LKY 601 A 1 HETATM 12 C C21 LKY . . . B 2 3.976 -28.485 17.491 1 26.71 ? C21 LKY 601 A 1 HETATM 13 C C23 LKY . . . B 2 3.04 -28.158 16.532 1 23.11 ? C23 LKY 601 A 1 HETATM 14 C C24 LKY . . . B 2 3.421 -27.975 15.22 1 23.83 ? C24 LKY 601 A 1 HETATM 15 C C26 LKY . . . B 2 1.452 -26.766 14.579 1 21.41 ? C26 LKY 601 A 1 HETATM 16 C C28 LKY . . . B 2 0.502 -26.473 13.51 1 18.2 ? C28 LKY 601 A 1 HETATM 17 C C29 LKY . . . B 2 0.803 -26.783 12.207 1 24.97 ? C29 LKY 601 A 1 HETATM 18 C C3 LKY . . . B 2 5.679 -28.45 15.828 1 21.89 ? C3 LKY 601 A 1 HETATM 19 C C30 LKY . . . B 2 -0.115 -26.487 11.225 1 26.69 ? C30 LKY 601 A 1 HETATM 20 C C31 LKY . . . B 2 -1.316 -25.898 11.552 1 26.72 ? C31 LKY 601 A 1 HETATM 21 C C32 LKY . . . B 2 -1.606 -25.599 12.865 1 25.9 ? C32 LKY 601 A 1 HETATM 22 C C33 LKY . . . B 2 -2.856 -24.992 13.211 1 24.38 ? C33 LKY 601 A 1 HETATM 23 C C35 LKY . . . B 2 -0.689 -25.886 13.849 1 19.85 ? C35 LKY 601 A 1 HETATM 24 C C4 LKY . . . B 2 7.109 -28.622 15.451 1 26.55 ? C4 LKY 601 A 1 HETATM 25 C C6 LKY . . . B 2 9.214 -27.547 14.942 1 25.37 ? C6 LKY 601 A 1 HETATM 26 C C7 LKY . . . B 2 9.565 -26.336 14.115 1 25.83 ? C7 LKY 601 A 1 HETATM 27 C C9 LKY . . . B 2 10.111 -24.313 15.372 1 27.81 ? C9 LKY 601 A 1 HETATM 28 F F22 LKY . . . B 2 3.596 -28.669 18.781 1 18.96 ? F22 LKY 601 A 1 HETATM 29 N N25 LKY . . . B 2 2.459 -27.642 14.252 1 18.79 ? N25 LKY 601 A 1 HETATM 30 N N34 LKY . . . B 2 -3.874 -24.515 13.505 1 19.08 ? N34 LKY 601 A 1 HETATM 31 N N5 LKY . . . B 2 7.873 -27.366 15.545 1 24.52 ? N5 LKY 601 A 1 HETATM 32 N N8 LKY . . . B 2 9.179 -25.153 14.826 1 33.7 ? N8 LKY 601 A 1 HETATM 33 O O10 LKY . . . B 2 9.853 -23.388 16.127 1 26.12 ? O10 LKY 601 A 1 HETATM 34 O O27 LKY . . . B 2 1.283 -26.224 15.659 1 21.58 ? O27 LKY 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 435 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #