data_6O42
#
_model_server_result.job_id            qjwI9rm-HmIKyKjrKm9ObA 
_model_server_result.datetime_utc      '2024-11-23 02:48:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o42 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    6O42 
#
_exptl.entry_id    6O42 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.68 
_cell.angle_gamma         90 
_cell.entry_id            6O42 
_cell.length_a            208.36 
_cell.length_b            37.92 
_cell.length_c            133.52 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O42 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H,I,J,L,M 1 1 
C,D,F,K,N,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf3 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.24 ? 
disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.231 ? 
disulf ? disulf6 B SG CYS 151 H CYS 142 1_555 B SG CYS 207 H CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 B SG CYS 151 H CYS 142 1_555 B SG CYS 207 H CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 C SG CYS 23 A CYS 23 1_555 C SG CYS 89 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf9 C SG CYS 135 A CYS 134 1_555 C SG CYS 195 A CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf10 C SG CYS 135 A CYS 134 1_555 C SG CYS 195 A CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 D SG CYS 22 B CYS 22 1_555 D SG CYS 96 B CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.232 ? 
disulf ? disulf12 D SG CYS 22 B CYS 22 1_555 D SG CYS 96 B CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.244 ? 
disulf ? disulf13 D SG CYS 151 B CYS 142 1_555 D SG CYS 207 B CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf14 D SG CYS 151 B CYS 142 1_555 D SG CYS 207 B CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6O42 
_atom_sites.fract_transf_matrix[1][1]    0.004799 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000308 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026371 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 GOL L 1 301 1 GOL GOL . 
H 4 GOL H 1 301 2 GOL GOL . 
I 4 GOL H 1 302 3 GOL GOL . 
J 5 SO4 H 1 303 1 SO4 SO4 . 
K 4 GOL A 1 301 4 GOL GOL . 
L 6 HOH L 1 401 23 HOH HOH . 
L 6 HOH L 2 402 21 HOH HOH . 
L 6 HOH L 3 403 20 HOH HOH . 
L 6 HOH L 4 404 15 HOH HOH . 
L 6 HOH L 5 405 3 HOH HOH . 
L 6 HOH L 6 406 16 HOH HOH . 
L 6 HOH L 7 407 2 HOH HOH . 
L 6 HOH L 8 408 1 HOH HOH . 
L 6 HOH L 9 409 5 HOH HOH . 
L 6 HOH L 10 410 17 HOH HOH . 
L 6 HOH L 11 411 4 HOH HOH . 
L 6 HOH L 12 412 18 HOH HOH . 
L 6 HOH L 13 413 30 HOH HOH . 
L 6 HOH L 14 414 6 HOH HOH . 
M 6 HOH H 1 401 32 HOH HOH . 
M 6 HOH H 2 402 46 HOH HOH . 
M 6 HOH H 3 403 10 HOH HOH . 
M 6 HOH H 4 404 48 HOH HOH . 
M 6 HOH H 5 405 44 HOH HOH . 
M 6 HOH H 6 406 36 HOH HOH . 
M 6 HOH H 7 407 38 HOH HOH . 
M 6 HOH H 8 408 47 HOH HOH . 
M 6 HOH H 9 409 31 HOH HOH . 
M 6 HOH H 10 410 29 HOH HOH . 
M 6 HOH H 11 411 33 HOH HOH . 
M 6 HOH H 12 412 43 HOH HOH . 
M 6 HOH H 13 413 7 HOH HOH . 
M 6 HOH H 14 414 27 HOH HOH . 
M 6 HOH H 15 415 22 HOH HOH . 
M 6 HOH H 16 416 40 HOH HOH . 
M 6 HOH H 17 417 45 HOH HOH . 
M 6 HOH H 18 418 42 HOH HOH . 
M 6 HOH H 19 419 39 HOH HOH . 
M 6 HOH H 20 420 24 HOH HOH . 
M 6 HOH H 21 421 26 HOH HOH . 
M 6 HOH H 22 422 8 HOH HOH . 
M 6 HOH H 23 423 19 HOH HOH . 
M 6 HOH H 24 424 41 HOH HOH . 
M 6 HOH H 25 425 28 HOH HOH . 
M 6 HOH H 26 426 9 HOH HOH . 
M 6 HOH H 27 427 34 HOH HOH . 
M 6 HOH H 28 428 35 HOH HOH . 
M 6 HOH H 29 429 37 HOH HOH . 
M 6 HOH H 30 430 25 HOH HOH . 
N 6 HOH A 1 401 50 HOH HOH . 
N 6 HOH A 2 402 64 HOH HOH . 
N 6 HOH A 3 403 49 HOH HOH . 
N 6 HOH A 4 404 51 HOH HOH . 
N 6 HOH A 5 405 59 HOH HOH . 
N 6 HOH A 6 406 54 HOH HOH . 
N 6 HOH A 7 407 57 HOH HOH . 
N 6 HOH A 8 408 60 HOH HOH . 
N 6 HOH A 9 409 62 HOH HOH . 
N 6 HOH A 10 410 12 HOH HOH . 
N 6 HOH A 11 411 55 HOH HOH . 
N 6 HOH A 12 412 63 HOH HOH . 
N 6 HOH A 13 413 61 HOH HOH . 
N 6 HOH A 14 414 58 HOH HOH . 
N 6 HOH A 15 415 56 HOH HOH . 
N 6 HOH A 16 416 65 HOH HOH . 
N 6 HOH A 17 417 11 HOH HOH . 
N 6 HOH A 18 418 52 HOH HOH . 
N 6 HOH A 19 419 53 HOH HOH . 
O 6 HOH B 1 301 66 HOH HOH . 
O 6 HOH B 2 302 13 HOH HOH . 
O 6 HOH B 3 303 68 HOH HOH . 
O 6 HOH B 4 304 14 HOH HOH . 
O 6 HOH B 5 305 67 HOH HOH . 
O 6 HOH B 6 306 71 HOH HOH . 
O 6 HOH B 7 307 69 HOH HOH . 
P 6 HOH I 1 701 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 4 -73.938 1.254 52.297 1 44.35 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . K 4 -75.18 1.23 51.659 1 47.94 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . K 4 -72.947 0.505 51.375 1 45.36 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . K 4 -72.576 1.27 50.279 1 33.59 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . K 4 -71.743 0.137 52.279 1 52.44 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . K 4 -70.976 -0.792 51.572 1 53.38 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#