data_6O47 # _model_server_result.job_id hjs5GmScw9zbIDNkuQvgHw _model_server_result.datetime_utc '2024-11-04 20:35:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 6O47 # _exptl.entry_id 6O47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 415.23 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description (3~{S})-3-[1-[4,5-bis(chloranyl)-1~{H}-benzimidazol-2-yl]-3-methyl-5-oxidanyl-pyrazol-4-yl]-3~{H}-2-benzofuran-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O47 _cell.length_a 116.157 _cell.length_b 116.157 _cell.length_c 59.951 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 240 A HIS 390 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 A SG CYS 246 A CYS 396 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A SG CYS 247 A CYS 397 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc4 A SG CYS 254 A CYS 404 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'C19 H12 Cl2 N4 O3' _chem_comp.formula_weight 415.23 _chem_comp.id LLS _chem_comp.mon_nstd_flag . _chem_comp.name (3~{S})-3-[1-[4,5-bis(chloranyl)-1~{H}-benzimidazol-2-yl]-3-methyl-5-oxidanyl-pyrazol-4-yl]-3~{H}-2-benzofuran-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL26 C25 LLS sing 258 n n CL24 C23 LLS sing 259 n n C25 C23 LLS sing 260 n y C25 C27 LLS doub 261 n y C23 C22 LLS doub 262 n y N28 C27 LLS sing 263 n y N28 C18 LLS doub 264 n y O01 C02 LLS sing 265 n n C27 C20 LLS sing 266 n y C18 N17 LLS sing 267 n n C18 N19 LLS sing 268 n y C02 N17 LLS sing 269 n y C02 C03 LLS doub 270 n y C22 C21 LLS sing 271 n y N17 N16 LLS sing 272 n y C20 C21 LLS doub 273 n y C20 N19 LLS sing 274 n y C03 C04 LLS sing 275 n n C03 C14 LLS sing 276 n y C04 O12 LLS sing 277 n n C04 C05 LLS sing 278 n n N16 C14 LLS doub 279 n y C14 C15 LLS sing 280 n n C06 C05 LLS sing 281 n y C06 C07 LLS doub 282 n y O12 C11 LLS sing 283 n n C05 C10 LLS doub 284 n y C07 C08 LLS sing 285 n y C11 C10 LLS sing 286 n n C11 O13 LLS doub 287 n n C10 C09 LLS sing 288 n y C08 C09 LLS doub 289 n y C15 H1 LLS sing 290 n n C15 H2 LLS sing 291 n n C15 H3 LLS sing 292 n n C21 H4 LLS sing 293 n n C22 H5 LLS sing 294 n n C04 H7 LLS sing 295 n n C06 H8 LLS sing 296 n n C07 H9 LLS sing 297 n n C08 H10 LLS sing 298 n n C09 H11 LLS sing 299 n n N19 H12 LLS sing 300 n n O01 H6 LLS sing 301 n n # _atom_sites.entry_id 6O47 _atom_sites.fract_transf_matrix[1][1] 0.008609 _atom_sites.fract_transf_matrix[1][2] 0.00497 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 601 601 CIT CIT . C 2 CIT A 1 602 701 CIT CIT . D 3 ZN A 1 603 1 ZN ZN . E 4 LLS A 1 604 2 LLS LIG . F 5 AEV A 1 605 2 AEV LI2 . G 6 HOH A 1 701 103 HOH HOH . G 6 HOH A 2 702 161 HOH HOH . G 6 HOH A 3 703 155 HOH HOH . G 6 HOH A 4 704 159 HOH HOH . G 6 HOH A 5 705 166 HOH HOH . G 6 HOH A 6 706 36 HOH HOH . G 6 HOH A 7 707 169 HOH HOH . G 6 HOH A 8 708 100 HOH HOH . G 6 HOH A 9 709 126 HOH HOH . G 6 HOH A 10 710 77 HOH HOH . G 6 HOH A 11 711 30 HOH HOH . G 6 HOH A 12 712 41 HOH HOH . G 6 HOH A 13 713 28 HOH HOH . G 6 HOH A 14 714 59 HOH HOH . G 6 HOH A 15 715 82 HOH HOH . G 6 HOH A 16 716 141 HOH HOH . G 6 HOH A 17 717 54 HOH HOH . G 6 HOH A 18 718 139 HOH HOH . G 6 HOH A 19 719 45 HOH HOH . G 6 HOH A 20 720 43 HOH HOH . G 6 HOH A 21 721 110 HOH HOH . G 6 HOH A 22 722 67 HOH HOH . G 6 HOH A 23 723 4 HOH HOH . G 6 HOH A 24 724 83 HOH HOH . G 6 HOH A 25 725 20 HOH HOH . G 6 HOH A 26 726 8 HOH HOH . G 6 HOH A 27 727 50 HOH HOH . G 6 HOH A 28 728 84 HOH HOH . G 6 HOH A 29 729 156 HOH HOH . G 6 HOH A 30 730 129 HOH HOH . G 6 HOH A 31 731 46 HOH HOH . G 6 HOH A 32 732 133 HOH HOH . G 6 HOH A 33 733 87 HOH HOH . G 6 HOH A 34 734 23 HOH HOH . G 6 HOH A 35 735 27 HOH HOH . G 6 HOH A 36 736 24 HOH HOH . G 6 HOH A 37 737 14 HOH HOH . G 6 HOH A 38 738 37 HOH HOH . G 6 HOH A 39 739 96 HOH HOH . G 6 HOH A 40 740 75 HOH HOH . G 6 HOH A 41 741 73 HOH HOH . G 6 HOH A 42 742 71 HOH HOH . G 6 HOH A 43 743 85 HOH HOH . G 6 HOH A 44 744 17 HOH HOH . G 6 HOH A 45 745 150 HOH HOH . G 6 HOH A 46 746 9 HOH HOH . G 6 HOH A 47 747 86 HOH HOH . G 6 HOH A 48 748 116 HOH HOH . G 6 HOH A 49 749 55 HOH HOH . G 6 HOH A 50 750 52 HOH HOH . G 6 HOH A 51 751 10 HOH HOH . G 6 HOH A 52 752 109 HOH HOH . G 6 HOH A 53 753 92 HOH HOH . G 6 HOH A 54 754 101 HOH HOH . G 6 HOH A 55 755 108 HOH HOH . G 6 HOH A 56 756 134 HOH HOH . G 6 HOH A 57 757 1 HOH HOH . G 6 HOH A 58 758 26 HOH HOH . G 6 HOH A 59 759 18 HOH HOH . G 6 HOH A 60 760 32 HOH HOH . G 6 HOH A 61 761 3 HOH HOH . G 6 HOH A 62 762 25 HOH HOH . G 6 HOH A 63 763 69 HOH HOH . G 6 HOH A 64 764 53 HOH HOH . G 6 HOH A 65 765 31 HOH HOH . G 6 HOH A 66 766 19 HOH HOH . G 6 HOH A 67 767 113 HOH HOH . G 6 HOH A 68 768 76 HOH HOH . G 6 HOH A 69 769 13 HOH HOH . G 6 HOH A 70 770 124 HOH HOH . G 6 HOH A 71 771 97 HOH HOH . G 6 HOH A 72 772 63 HOH HOH . G 6 HOH A 73 773 138 HOH HOH . G 6 HOH A 74 774 176 HOH HOH . G 6 HOH A 75 775 149 HOH HOH . G 6 HOH A 76 776 151 HOH HOH . G 6 HOH A 77 777 125 HOH HOH . G 6 HOH A 78 778 66 HOH HOH . G 6 HOH A 79 779 72 HOH HOH . G 6 HOH A 80 780 62 HOH HOH . G 6 HOH A 81 781 94 HOH HOH . G 6 HOH A 82 782 29 HOH HOH . G 6 HOH A 83 783 56 HOH HOH . G 6 HOH A 84 784 7 HOH HOH . G 6 HOH A 85 785 35 HOH HOH . G 6 HOH A 86 786 33 HOH HOH . G 6 HOH A 87 787 34 HOH HOH . G 6 HOH A 88 788 64 HOH HOH . G 6 HOH A 89 789 135 HOH HOH . G 6 HOH A 90 790 2 HOH HOH . G 6 HOH A 91 791 12 HOH HOH . G 6 HOH A 92 792 144 HOH HOH . G 6 HOH A 93 793 57 HOH HOH . G 6 HOH A 94 794 74 HOH HOH . G 6 HOH A 95 795 81 HOH HOH . G 6 HOH A 96 796 154 HOH HOH . G 6 HOH A 97 797 136 HOH HOH . G 6 HOH A 98 798 145 HOH HOH . G 6 HOH A 99 799 119 HOH HOH . G 6 HOH A 100 800 40 HOH HOH . G 6 HOH A 101 801 68 HOH HOH . G 6 HOH A 102 802 11 HOH HOH . G 6 HOH A 103 803 165 HOH HOH . G 6 HOH A 104 804 121 HOH HOH . G 6 HOH A 105 805 38 HOH HOH . G 6 HOH A 106 806 70 HOH HOH . G 6 HOH A 107 807 5 HOH HOH . G 6 HOH A 108 808 174 HOH HOH . G 6 HOH A 109 809 58 HOH HOH . G 6 HOH A 110 810 39 HOH HOH . G 6 HOH A 111 811 123 HOH HOH . G 6 HOH A 112 812 177 HOH HOH . G 6 HOH A 113 813 48 HOH HOH . G 6 HOH A 114 814 95 HOH HOH . G 6 HOH A 115 815 88 HOH HOH . G 6 HOH A 116 816 130 HOH HOH . G 6 HOH A 117 817 171 HOH HOH . G 6 HOH A 118 818 49 HOH HOH . G 6 HOH A 119 819 21 HOH HOH . G 6 HOH A 120 820 148 HOH HOH . G 6 HOH A 121 821 44 HOH HOH . G 6 HOH A 122 822 147 HOH HOH . G 6 HOH A 123 823 79 HOH HOH . G 6 HOH A 124 824 51 HOH HOH . G 6 HOH A 125 825 78 HOH HOH . G 6 HOH A 126 826 162 HOH HOH . G 6 HOH A 127 827 120 HOH HOH . G 6 HOH A 128 828 6 HOH HOH . G 6 HOH A 129 829 65 HOH HOH . G 6 HOH A 130 830 15 HOH HOH . G 6 HOH A 131 831 102 HOH HOH . G 6 HOH A 132 832 178 HOH HOH . G 6 HOH A 133 833 140 HOH HOH . G 6 HOH A 134 834 114 HOH HOH . G 6 HOH A 135 835 99 HOH HOH . G 6 HOH A 136 836 182 HOH HOH . G 6 HOH A 137 837 118 HOH HOH . G 6 HOH A 138 838 61 HOH HOH . G 6 HOH A 139 839 91 HOH HOH . G 6 HOH A 140 840 47 HOH HOH . G 6 HOH A 141 841 131 HOH HOH . G 6 HOH A 142 842 180 HOH HOH . G 6 HOH A 143 843 172 HOH HOH . G 6 HOH A 144 844 157 HOH HOH . G 6 HOH A 145 845 181 HOH HOH . G 6 HOH A 146 846 112 HOH HOH . G 6 HOH A 147 847 146 HOH HOH . G 6 HOH A 148 848 107 HOH HOH . G 6 HOH A 149 849 164 HOH HOH . G 6 HOH A 150 850 173 HOH HOH . G 6 HOH A 151 851 89 HOH HOH . G 6 HOH A 152 852 106 HOH HOH . G 6 HOH A 153 853 115 HOH HOH . G 6 HOH A 154 854 93 HOH HOH . G 6 HOH A 155 855 117 HOH HOH . G 6 HOH A 156 856 142 HOH HOH . G 6 HOH A 157 857 22 HOH HOH . G 6 HOH A 158 858 90 HOH HOH . G 6 HOH A 159 859 98 HOH HOH . G 6 HOH A 160 860 42 HOH HOH . G 6 HOH A 161 861 132 HOH HOH . G 6 HOH A 162 862 127 HOH HOH . G 6 HOH A 163 863 128 HOH HOH . G 6 HOH A 164 864 175 HOH HOH . G 6 HOH A 165 865 160 HOH HOH . G 6 HOH A 166 866 122 HOH HOH . G 6 HOH A 167 867 152 HOH HOH . G 6 HOH A 168 868 16 HOH HOH . G 6 HOH A 169 869 80 HOH HOH . G 6 HOH A 170 870 179 HOH HOH . G 6 HOH A 171 871 111 HOH HOH . G 6 HOH A 172 872 137 HOH HOH . G 6 HOH A 173 873 105 HOH HOH . G 6 HOH A 174 874 158 HOH HOH . G 6 HOH A 175 875 143 HOH HOH . G 6 HOH A 176 876 104 HOH HOH . G 6 HOH A 177 877 60 HOH HOH . G 6 HOH A 178 878 153 HOH HOH . G 6 HOH A 179 879 168 HOH HOH . G 6 HOH A 180 880 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 LLS . A . E 4 -37.987 -16.766 -3.911 0.6 37.44 ? C10 LLS 604 A 1 HETATM 2 C C15 LLS . A . E 4 -40.554 -14.682 -5.662 0.6 31.98 ? C15 LLS 604 A 1 HETATM 3 C C20 LLS . A . E 4 -36.904 -8.989 -6.21 0.6 26.69 ? C20 LLS 604 A 1 HETATM 4 C C21 LLS . A . E 4 -37.012 -7.58 -6.066 0.6 27.43 ? C21 LLS 604 A 1 HETATM 5 C C22 LLS . A . E 4 -35.901 -6.784 -6.3 0.6 29.03 ? C22 LLS 604 A 1 HETATM 6 C C02 LLS . A . E 4 -37.059 -13.574 -6.283 0.6 28.6 ? C02 LLS 604 A 1 HETATM 7 C C03 LLS . A . E 4 -37.933 -14.612 -6.102 0.6 33.24 ? C03 LLS 604 A 1 HETATM 8 C C04 LLS . A . E 4 -37.466 -16.071 -6.084 0.6 34.24 ? C04 LLS 604 A 1 HETATM 9 C C05 LLS . A . E 4 -38.368 -16.964 -5.19 0.6 35.76 ? C05 LLS 604 A 1 HETATM 10 C C06 LLS . A . E 4 -39.44 -17.846 -5.466 0.6 37.75 ? C06 LLS 604 A 1 HETATM 11 C C07 LLS . A . E 4 -40.069 -18.498 -4.415 0.6 38.83 ? C07 LLS 604 A 1 HETATM 12 C C08 LLS . A . E 4 -39.663 -18.3 -3.107 0.6 40.44 ? C08 LLS 604 A 1 HETATM 13 C C09 LLS . A . E 4 -38.623 -17.434 -2.835 0.6 39.06 ? C09 LLS 604 A 1 HETATM 14 C C11 LLS . A . E 4 -36.829 -15.792 -3.974 0.6 40.55 ? C11 LLS 604 A 1 HETATM 15 C C14 LLS . A . E 4 -39.197 -14.033 -5.91 0.6 29.57 ? C14 LLS 604 A 1 HETATM 16 C C18 LLS . A . E 4 -37.163 -11.148 -6.345 0.6 27.83 ? C18 LLS 604 A 1 HETATM 17 C C23 LLS . A . E 4 -34.694 -7.372 -6.672 0.6 31.28 ? C23 LLS 604 A 1 HETATM 18 C C25 LLS . A . E 4 -34.597 -8.74 -6.814 0.6 32.57 ? C25 LLS 604 A 1 HETATM 19 C C27 LLS . A . E 4 -35.728 -9.552 -6.578 0.6 29.47 ? C27 LLS 604 A 1 HETATM 20 N N16 LLS . A . E 4 -39.044 -12.715 -5.999 0.6 28.5 ? N16 LLS 604 A 1 HETATM 21 N N17 LLS . A . E 4 -37.737 -12.468 -6.245 0.6 27.87 ? N17 LLS 604 A 1 HETATM 22 N N19 LLS . A . E 4 -37.784 -10.002 -6.052 0.6 26.36 ? N19 LLS 604 A 1 HETATM 23 N N28 LLS . A . E 4 -35.898 -10.889 -6.638 0.6 26.49 ? N28 LLS 604 A 1 HETATM 24 O O01 LLS . A . E 4 -35.688 -13.683 -6.503 0.6 26.83 ? O01 LLS 604 A 1 HETATM 25 O O12 LLS . A . E 4 -36.296 -15.977 -5.278 0.6 44.7 ? O12 LLS 604 A 1 HETATM 26 O O13 LLS . A . E 4 -36.48 -15.05 -3.119 0.6 35.91 ? O13 LLS 604 A 1 HETATM 27 CL CL24 LLS . A . E 4 -33.247 -6.39 -6.994 0.6 40.31 ? CL24 LLS 604 A 1 HETATM 28 CL CL26 LLS . A . E 4 -33.053 -9.489 -7.291 0.6 77.76 ? CL26 LLS 604 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #