data_6O47 # _model_server_result.job_id dh4UnGDO2KHl4U4vN5XV-Q _model_server_result.datetime_utc '2024-11-04 20:33:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 6O47 # _exptl.entry_id 6O47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 415.23 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-(4,5-dichloro-1H-benzimidazol-2-yl)-5-methyl-4-[(1R)-3-oxo-1,3-dihydro-2-benzofuran-1-yl]-1,2-dihydro-3H-pyrazol-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O47 _cell.length_a 116.157 _cell.length_b 116.157 _cell.length_c 59.951 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 240 A HIS 390 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 A SG CYS 246 A CYS 396 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A SG CYS 247 A CYS 397 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc4 A SG CYS 254 A CYS 404 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'C19 H12 Cl2 N4 O3' _chem_comp.formula_weight 415.23 _chem_comp.id AEV _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4,5-dichloro-1H-benzimidazol-2-yl)-5-methyl-4-[(1R)-3-oxo-1,3-dihydro-2-benzofuran-1-yl]-1,2-dihydro-3H-pyrazol-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAB CAP AEV doub 1 n n CLD CAR AEV sing 2 n n CAI CAR AEV doub 3 n y CAI CAK AEV sing 4 n y CAR CAT AEV sing 5 n y CAP OAO AEV sing 6 n n CAP CAU AEV sing 7 n n CAK CAY AEV doub 8 n y CAT CLE AEV sing 9 n n CAT CAZ AEV doub 10 n y CAH CAU AEV doub 11 n y CAH CAF AEV sing 12 n y CAY CAZ AEV sing 13 n y CAY NAL AEV sing 14 n y CAZ NAN AEV sing 15 n y OAO CBA AEV sing 16 n n CAU CAW AEV sing 17 n y OAC CAS AEV doub 18 n n NAL CAV AEV sing 19 n y NAN CAV AEV doub 20 n y CAV NBB AEV sing 21 n n CAF CAG AEV doub 22 n y CAS NBB AEV sing 23 n n CAS CAX AEV sing 24 n n NBB NAM AEV sing 25 n n CBA CAW AEV sing 26 n n CBA CAX AEV sing 27 n n CAW CAJ AEV doub 28 n y CAX CAQ AEV doub 29 n n NAM CAQ AEV sing 30 n n CAQ CAA AEV sing 31 n n CAG CAJ AEV sing 32 n y CAH H1 AEV sing 33 n n CAF H2 AEV sing 34 n n CAG H3 AEV sing 35 n n CAJ H4 AEV sing 36 n n CBA H5 AEV sing 37 n n CAA H6 AEV sing 38 n n CAA H7 AEV sing 39 n n CAA H8 AEV sing 40 n n NAM H9 AEV sing 41 n n NAL H10 AEV sing 42 n n CAK H11 AEV sing 43 n n CAI H12 AEV sing 44 n n # _atom_sites.entry_id 6O47 _atom_sites.fract_transf_matrix[1][1] 0.008609 _atom_sites.fract_transf_matrix[1][2] 0.00497 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 601 601 CIT CIT . C 2 CIT A 1 602 701 CIT CIT . D 3 ZN A 1 603 1 ZN ZN . E 4 LLS A 1 604 2 LLS LIG . F 5 AEV A 1 605 2 AEV LI2 . G 6 HOH A 1 701 103 HOH HOH . G 6 HOH A 2 702 161 HOH HOH . G 6 HOH A 3 703 155 HOH HOH . G 6 HOH A 4 704 159 HOH HOH . G 6 HOH A 5 705 166 HOH HOH . G 6 HOH A 6 706 36 HOH HOH . G 6 HOH A 7 707 169 HOH HOH . G 6 HOH A 8 708 100 HOH HOH . G 6 HOH A 9 709 126 HOH HOH . G 6 HOH A 10 710 77 HOH HOH . G 6 HOH A 11 711 30 HOH HOH . G 6 HOH A 12 712 41 HOH HOH . G 6 HOH A 13 713 28 HOH HOH . G 6 HOH A 14 714 59 HOH HOH . G 6 HOH A 15 715 82 HOH HOH . G 6 HOH A 16 716 141 HOH HOH . G 6 HOH A 17 717 54 HOH HOH . G 6 HOH A 18 718 139 HOH HOH . G 6 HOH A 19 719 45 HOH HOH . G 6 HOH A 20 720 43 HOH HOH . G 6 HOH A 21 721 110 HOH HOH . G 6 HOH A 22 722 67 HOH HOH . G 6 HOH A 23 723 4 HOH HOH . G 6 HOH A 24 724 83 HOH HOH . G 6 HOH A 25 725 20 HOH HOH . G 6 HOH A 26 726 8 HOH HOH . G 6 HOH A 27 727 50 HOH HOH . G 6 HOH A 28 728 84 HOH HOH . G 6 HOH A 29 729 156 HOH HOH . G 6 HOH A 30 730 129 HOH HOH . G 6 HOH A 31 731 46 HOH HOH . G 6 HOH A 32 732 133 HOH HOH . G 6 HOH A 33 733 87 HOH HOH . G 6 HOH A 34 734 23 HOH HOH . G 6 HOH A 35 735 27 HOH HOH . G 6 HOH A 36 736 24 HOH HOH . G 6 HOH A 37 737 14 HOH HOH . G 6 HOH A 38 738 37 HOH HOH . G 6 HOH A 39 739 96 HOH HOH . G 6 HOH A 40 740 75 HOH HOH . G 6 HOH A 41 741 73 HOH HOH . G 6 HOH A 42 742 71 HOH HOH . G 6 HOH A 43 743 85 HOH HOH . G 6 HOH A 44 744 17 HOH HOH . G 6 HOH A 45 745 150 HOH HOH . G 6 HOH A 46 746 9 HOH HOH . G 6 HOH A 47 747 86 HOH HOH . G 6 HOH A 48 748 116 HOH HOH . G 6 HOH A 49 749 55 HOH HOH . G 6 HOH A 50 750 52 HOH HOH . G 6 HOH A 51 751 10 HOH HOH . G 6 HOH A 52 752 109 HOH HOH . G 6 HOH A 53 753 92 HOH HOH . G 6 HOH A 54 754 101 HOH HOH . G 6 HOH A 55 755 108 HOH HOH . G 6 HOH A 56 756 134 HOH HOH . G 6 HOH A 57 757 1 HOH HOH . G 6 HOH A 58 758 26 HOH HOH . G 6 HOH A 59 759 18 HOH HOH . G 6 HOH A 60 760 32 HOH HOH . G 6 HOH A 61 761 3 HOH HOH . G 6 HOH A 62 762 25 HOH HOH . G 6 HOH A 63 763 69 HOH HOH . G 6 HOH A 64 764 53 HOH HOH . G 6 HOH A 65 765 31 HOH HOH . G 6 HOH A 66 766 19 HOH HOH . G 6 HOH A 67 767 113 HOH HOH . G 6 HOH A 68 768 76 HOH HOH . G 6 HOH A 69 769 13 HOH HOH . G 6 HOH A 70 770 124 HOH HOH . G 6 HOH A 71 771 97 HOH HOH . G 6 HOH A 72 772 63 HOH HOH . G 6 HOH A 73 773 138 HOH HOH . G 6 HOH A 74 774 176 HOH HOH . G 6 HOH A 75 775 149 HOH HOH . G 6 HOH A 76 776 151 HOH HOH . G 6 HOH A 77 777 125 HOH HOH . G 6 HOH A 78 778 66 HOH HOH . G 6 HOH A 79 779 72 HOH HOH . G 6 HOH A 80 780 62 HOH HOH . G 6 HOH A 81 781 94 HOH HOH . G 6 HOH A 82 782 29 HOH HOH . G 6 HOH A 83 783 56 HOH HOH . G 6 HOH A 84 784 7 HOH HOH . G 6 HOH A 85 785 35 HOH HOH . G 6 HOH A 86 786 33 HOH HOH . G 6 HOH A 87 787 34 HOH HOH . G 6 HOH A 88 788 64 HOH HOH . G 6 HOH A 89 789 135 HOH HOH . G 6 HOH A 90 790 2 HOH HOH . G 6 HOH A 91 791 12 HOH HOH . G 6 HOH A 92 792 144 HOH HOH . G 6 HOH A 93 793 57 HOH HOH . G 6 HOH A 94 794 74 HOH HOH . G 6 HOH A 95 795 81 HOH HOH . G 6 HOH A 96 796 154 HOH HOH . G 6 HOH A 97 797 136 HOH HOH . G 6 HOH A 98 798 145 HOH HOH . G 6 HOH A 99 799 119 HOH HOH . G 6 HOH A 100 800 40 HOH HOH . G 6 HOH A 101 801 68 HOH HOH . G 6 HOH A 102 802 11 HOH HOH . G 6 HOH A 103 803 165 HOH HOH . G 6 HOH A 104 804 121 HOH HOH . G 6 HOH A 105 805 38 HOH HOH . G 6 HOH A 106 806 70 HOH HOH . G 6 HOH A 107 807 5 HOH HOH . G 6 HOH A 108 808 174 HOH HOH . G 6 HOH A 109 809 58 HOH HOH . G 6 HOH A 110 810 39 HOH HOH . G 6 HOH A 111 811 123 HOH HOH . G 6 HOH A 112 812 177 HOH HOH . G 6 HOH A 113 813 48 HOH HOH . G 6 HOH A 114 814 95 HOH HOH . G 6 HOH A 115 815 88 HOH HOH . G 6 HOH A 116 816 130 HOH HOH . G 6 HOH A 117 817 171 HOH HOH . G 6 HOH A 118 818 49 HOH HOH . G 6 HOH A 119 819 21 HOH HOH . G 6 HOH A 120 820 148 HOH HOH . G 6 HOH A 121 821 44 HOH HOH . G 6 HOH A 122 822 147 HOH HOH . G 6 HOH A 123 823 79 HOH HOH . G 6 HOH A 124 824 51 HOH HOH . G 6 HOH A 125 825 78 HOH HOH . G 6 HOH A 126 826 162 HOH HOH . G 6 HOH A 127 827 120 HOH HOH . G 6 HOH A 128 828 6 HOH HOH . G 6 HOH A 129 829 65 HOH HOH . G 6 HOH A 130 830 15 HOH HOH . G 6 HOH A 131 831 102 HOH HOH . G 6 HOH A 132 832 178 HOH HOH . G 6 HOH A 133 833 140 HOH HOH . G 6 HOH A 134 834 114 HOH HOH . G 6 HOH A 135 835 99 HOH HOH . G 6 HOH A 136 836 182 HOH HOH . G 6 HOH A 137 837 118 HOH HOH . G 6 HOH A 138 838 61 HOH HOH . G 6 HOH A 139 839 91 HOH HOH . G 6 HOH A 140 840 47 HOH HOH . G 6 HOH A 141 841 131 HOH HOH . G 6 HOH A 142 842 180 HOH HOH . G 6 HOH A 143 843 172 HOH HOH . G 6 HOH A 144 844 157 HOH HOH . G 6 HOH A 145 845 181 HOH HOH . G 6 HOH A 146 846 112 HOH HOH . G 6 HOH A 147 847 146 HOH HOH . G 6 HOH A 148 848 107 HOH HOH . G 6 HOH A 149 849 164 HOH HOH . G 6 HOH A 150 850 173 HOH HOH . G 6 HOH A 151 851 89 HOH HOH . G 6 HOH A 152 852 106 HOH HOH . G 6 HOH A 153 853 115 HOH HOH . G 6 HOH A 154 854 93 HOH HOH . G 6 HOH A 155 855 117 HOH HOH . G 6 HOH A 156 856 142 HOH HOH . G 6 HOH A 157 857 22 HOH HOH . G 6 HOH A 158 858 90 HOH HOH . G 6 HOH A 159 859 98 HOH HOH . G 6 HOH A 160 860 42 HOH HOH . G 6 HOH A 161 861 132 HOH HOH . G 6 HOH A 162 862 127 HOH HOH . G 6 HOH A 163 863 128 HOH HOH . G 6 HOH A 164 864 175 HOH HOH . G 6 HOH A 165 865 160 HOH HOH . G 6 HOH A 166 866 122 HOH HOH . G 6 HOH A 167 867 152 HOH HOH . G 6 HOH A 168 868 16 HOH HOH . G 6 HOH A 169 869 80 HOH HOH . G 6 HOH A 170 870 179 HOH HOH . G 6 HOH A 171 871 111 HOH HOH . G 6 HOH A 172 872 137 HOH HOH . G 6 HOH A 173 873 105 HOH HOH . G 6 HOH A 174 874 158 HOH HOH . G 6 HOH A 175 875 143 HOH HOH . G 6 HOH A 176 876 104 HOH HOH . G 6 HOH A 177 877 60 HOH HOH . G 6 HOH A 178 878 153 HOH HOH . G 6 HOH A 179 879 168 HOH HOH . G 6 HOH A 180 880 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH AEV . B . F 5 -38.46 -17.125 -2.72 0.4 38.5 ? CAH AEV 605 A 1 HETATM 2 C CAF AEV . B . F 5 -39.594 -17.905 -2.847 0.4 40.18 ? CAF AEV 605 A 1 HETATM 3 C CAG AEV . B . F 5 -40.163 -18.105 -4.092 0.4 39.05 ? CAG AEV 605 A 1 HETATM 4 C CAJ AEV . B . F 5 -39.601 -17.527 -5.219 0.4 38.23 ? CAJ AEV 605 A 1 HETATM 5 C CAW AEV . B . F 5 -38.436 -16.732 -5.087 0.4 35.85 ? CAW AEV 605 A 1 HETATM 6 C CAU AEV . B . F 5 -37.886 -16.533 -3.876 0.4 37.26 ? CAU AEV 605 A 1 HETATM 7 C CAP AEV . B . F 5 -36.663 -15.652 -4.093 0.4 39.94 ? CAP AEV 605 A 1 HETATM 8 O OAB AEV . B . F 5 -36.105 -15.011 -3.269 0.4 36.85 ? OAB AEV 605 A 1 HETATM 9 O OAO AEV . B . F 5 -36.33 -15.755 -5.469 0.4 42.48 ? OAO AEV 605 A 1 HETATM 10 C CBA AEV . B . F 5 -37.581 -15.954 -6.123 0.4 34.2 ? CBA AEV 605 A 1 HETATM 11 C CAX AEV . B . F 5 -37.524 -16.791 -7.394 0.4 30.52 ? CAX AEV 605 A 1 HETATM 12 C CAS AEV . B . F 5 -36.903 -17.998 -7.584 0.4 28.94 ? CAS AEV 605 A 1 HETATM 13 O OAC AEV . B . F 5 -36.143 -18.723 -6.666 0.4 26.4 ? OAC AEV 605 A 1 HETATM 14 C CAQ AEV . B . F 5 -38.17 -16.463 -8.58 0.4 28.56 ? CAQ AEV 605 A 1 HETATM 15 C CAA AEV . B . F 5 -39.003 -15.211 -8.841 0.4 27.62 ? CAA AEV 605 A 1 HETATM 16 N NAM AEV . B . F 5 -37.924 -17.436 -9.45 0.4 26 ? NAM AEV 605 A 1 HETATM 17 N NBB AEV . B . F 5 -37.117 -18.339 -8.825 0.4 26.22 ? NBB AEV 605 A 1 HETATM 18 C CAV AEV . B . F 5 -36.689 -19.586 -9.421 0.4 24.34 ? CAV AEV 605 A 1 HETATM 19 N NAL AEV . B . F 5 -36.167 -20.617 -8.753 0.4 22.26 ? NAL AEV 605 A 1 HETATM 20 C CAY AEV . B . F 5 -35.965 -21.631 -9.62 0.4 24.61 ? CAY AEV 605 A 1 HETATM 21 C CAK AEV . B . F 5 -35.419 -22.937 -9.473 0.4 23.74 ? CAK AEV 605 A 1 HETATM 22 C CAI AEV . B . F 5 -35.348 -23.77 -10.577 0.4 24.85 ? CAI AEV 605 A 1 HETATM 23 C CAR AEV . B . F 5 -35.806 -23.311 -11.811 0.4 26.9 ? CAR AEV 605 A 1 HETATM 24 CL CLD AEV . B . F 5 -35.737 -24.353 -13.243 0.4 18.84 ? CLD AEV 605 A 1 HETATM 25 C CAT AEV . B . F 5 -36.333 -22.041 -11.951 0.4 22.17 ? CAT AEV 605 A 1 HETATM 26 CL CLE AEV . B . F 5 -36.911 -21.463 -13.534 0.4 17.87 ? CLE AEV 605 A 1 HETATM 27 C CAZ AEV . B . F 5 -36.41 -21.197 -10.83 0.4 23.38 ? CAZ AEV 605 A 1 HETATM 28 N NAN AEV . B . F 5 -36.872 -19.937 -10.69 0.4 21.66 ? NAN AEV 605 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #