data_6O48 # _model_server_result.job_id 7ePn-plxZtYG9ibdaDdE9g _model_server_result.datetime_utc '2024-11-05 15:18:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 6O48 # _exptl.entry_id 6O48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O48 _cell.length_a 58.407 _cell.length_b 86.244 _cell.length_c 46.581 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 60 A ASP 60 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 C NA NA . A NA 501 1_555 I O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc3 C NA NA . A NA 501 1_555 I O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc4 C NA NA . A NA 501 1_555 I O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc5 C NA NA . A NA 501 1_555 I O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc6 C NA NA . A NA 501 1_555 I O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 262 n n C1 C2 GOL sing 263 n n C1 H11 GOL sing 264 n n C1 H12 GOL sing 265 n n O1 HO1 GOL sing 266 n n C2 O2 GOL sing 267 n n C2 C3 GOL sing 268 n n C2 H2 GOL sing 269 n n O2 HO2 GOL sing 270 n n C3 O3 GOL sing 271 n n C3 H31 GOL sing 272 n n C3 H32 GOL sing 273 n n O3 HO3 GOL sing 274 n n # _atom_sites.entry_id 6O48 _atom_sites.fract_transf_matrix[1][1] 0.017121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 501 501 NA NA . D 3 CL A 1 502 511 CL CL . E 4 FMT A 1 503 531 FMT FMT . F 5 0Q4 B 1 201 201 0Q4 0Q4 . G 3 CL B 1 202 512 CL CL . H 6 GOL B 1 203 521 GOL GOL . I 7 HOH A 1 601 1040 HOH HOH . I 7 HOH A 2 602 1075 HOH HOH . I 7 HOH A 3 603 1106 HOH HOH . I 7 HOH A 4 604 1019 HOH HOH . I 7 HOH A 5 605 1064 HOH HOH . I 7 HOH A 6 606 1045 HOH HOH . I 7 HOH A 7 607 1031 HOH HOH . I 7 HOH A 8 608 1094 HOH HOH . I 7 HOH A 9 609 1090 HOH HOH . I 7 HOH A 10 610 1005 HOH HOH . I 7 HOH A 11 611 1022 HOH HOH . I 7 HOH A 12 612 1010 HOH HOH . I 7 HOH A 13 613 1043 HOH HOH . I 7 HOH A 14 614 1096 HOH HOH . I 7 HOH A 15 615 1004 HOH HOH . I 7 HOH A 16 616 1033 HOH HOH . I 7 HOH A 17 617 1008 HOH HOH . I 7 HOH A 18 618 1003 HOH HOH . I 7 HOH A 19 619 1046 HOH HOH . I 7 HOH A 20 620 1081 HOH HOH . I 7 HOH A 21 621 1020 HOH HOH . I 7 HOH A 22 622 1077 HOH HOH . I 7 HOH A 23 623 1025 HOH HOH . I 7 HOH A 24 624 1080 HOH HOH . I 7 HOH A 25 625 1035 HOH HOH . I 7 HOH A 26 626 1092 HOH HOH . I 7 HOH A 27 627 1052 HOH HOH . I 7 HOH A 28 628 1018 HOH HOH . I 7 HOH A 29 629 1095 HOH HOH . I 7 HOH A 30 630 1063 HOH HOH . I 7 HOH A 31 631 1104 HOH HOH . I 7 HOH A 32 632 1108 HOH HOH . I 7 HOH A 33 633 1012 HOH HOH . I 7 HOH A 34 634 1026 HOH HOH . I 7 HOH A 35 635 1076 HOH HOH . I 7 HOH A 36 636 1100 HOH HOH . I 7 HOH A 37 637 1036 HOH HOH . I 7 HOH A 38 638 1029 HOH HOH . I 7 HOH A 39 639 1044 HOH HOH . I 7 HOH A 40 640 1039 HOH HOH . I 7 HOH A 41 641 1037 HOH HOH . I 7 HOH A 42 642 1085 HOH HOH . I 7 HOH A 43 643 1078 HOH HOH . I 7 HOH A 44 644 1071 HOH HOH . I 7 HOH A 45 645 1093 HOH HOH . I 7 HOH A 46 646 1103 HOH HOH . I 7 HOH A 47 647 1066 HOH HOH . J 7 HOH B 1 301 1097 HOH HOH . J 7 HOH B 2 302 1072 HOH HOH . J 7 HOH B 3 303 1099 HOH HOH . J 7 HOH B 4 304 1069 HOH HOH . J 7 HOH B 5 305 1013 HOH HOH . J 7 HOH B 6 306 1021 HOH HOH . J 7 HOH B 7 307 1047 HOH HOH . J 7 HOH B 8 308 1027 HOH HOH . J 7 HOH B 9 309 1059 HOH HOH . J 7 HOH B 10 310 1051 HOH HOH . J 7 HOH B 11 311 1056 HOH HOH . J 7 HOH B 12 312 1068 HOH HOH . J 7 HOH B 13 313 1053 HOH HOH . J 7 HOH B 14 314 1011 HOH HOH . J 7 HOH B 15 315 1087 HOH HOH . J 7 HOH B 16 316 1086 HOH HOH . J 7 HOH B 17 317 1001 HOH HOH . J 7 HOH B 18 318 1055 HOH HOH . J 7 HOH B 19 319 1088 HOH HOH . J 7 HOH B 20 320 1089 HOH HOH . J 7 HOH B 21 321 1042 HOH HOH . J 7 HOH B 22 322 1083 HOH HOH . J 7 HOH B 23 323 1006 HOH HOH . J 7 HOH B 24 324 1007 HOH HOH . J 7 HOH B 25 325 1048 HOH HOH . J 7 HOH B 26 326 1016 HOH HOH . J 7 HOH B 27 327 1070 HOH HOH . J 7 HOH B 28 328 1032 HOH HOH . J 7 HOH B 29 329 1062 HOH HOH . J 7 HOH B 30 330 1065 HOH HOH . J 7 HOH B 31 331 1050 HOH HOH . J 7 HOH B 32 332 1009 HOH HOH . J 7 HOH B 33 333 1028 HOH HOH . J 7 HOH B 34 334 1024 HOH HOH . J 7 HOH B 35 335 1079 HOH HOH . J 7 HOH B 36 336 1015 HOH HOH . J 7 HOH B 37 337 1030 HOH HOH . J 7 HOH B 38 338 1041 HOH HOH . J 7 HOH B 39 339 1060 HOH HOH . J 7 HOH B 40 340 1017 HOH HOH . J 7 HOH B 41 341 1057 HOH HOH . J 7 HOH B 42 342 1074 HOH HOH . J 7 HOH B 43 343 1082 HOH HOH . J 7 HOH B 44 344 1098 HOH HOH . J 7 HOH B 45 345 1023 HOH HOH . J 7 HOH B 46 346 1014 HOH HOH . J 7 HOH B 47 347 1002 HOH HOH . J 7 HOH B 48 348 1054 HOH HOH . J 7 HOH B 49 349 1061 HOH HOH . J 7 HOH B 50 350 1073 HOH HOH . J 7 HOH B 51 351 1034 HOH HOH . J 7 HOH B 52 352 1038 HOH HOH . J 7 HOH B 53 353 1101 HOH HOH . J 7 HOH B 54 354 1102 HOH HOH . J 7 HOH B 55 355 1067 HOH HOH . J 7 HOH B 56 356 1049 HOH HOH . J 7 HOH B 57 357 1107 HOH HOH . J 7 HOH B 58 358 1058 HOH HOH . J 7 HOH B 59 359 1091 HOH HOH . J 7 HOH B 60 360 1105 HOH HOH . J 7 HOH B 61 361 1084 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . B . H 6 14.361 26.922 39.759 0.5 21.03 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . B . H 6 13.143 27.316 39.154 0.5 20.39 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . B . H 6 14.554 27.693 41.056 0.5 21.6 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . B . H 6 13.294 27.9 41.708 0.5 27.74 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . B . H 6 15.107 29.089 40.738 0.5 21.51 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . B . H 6 14.945 29.853 41.942 0.5 20.6 ? O3 GOL 203 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #