data_6O4Z # _model_server_result.job_id L0e2JHwNSgQbYfKh9ukXHw _model_server_result.datetime_utc '2025-07-15 22:49:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 6O4Z # _exptl.entry_id 6O4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.27 _cell.angle_gamma 90 _cell.entry_id 6O4Z _cell.length_a 56.134 _cell.length_b 79.689 _cell.length_c 57.442 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc1 A O ASP 37 A ASP 37 1_555 F NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc2 A O ARG 44 A ARG 44 1_555 E NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc3 A OE1 GLU 46 A GLU 46 1_555 E NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc4 A O THR 94 A THR 94 1_555 G NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc5 A OE1 GLN 96 A GLN 96 1_555 G NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc6 A O TRP 147 A TRP 147 1_555 H NA NA . A NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc7 H NA NA . A NA 305 1_555 N O HOH . A HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc8 I NA NA . A NA 306 1_555 N O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.107 ? metalc ? metalc9 I NA NA . A NA 306 1_555 N O HOH . A HOH 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6O4Z _atom_sites.fract_transf_matrix[1][1] 0.017815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008794 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 301 3 GOL GOL . E 5 NA A 1 302 5 NA NA . F 5 NA A 1 303 6 NA NA . G 5 NA A 1 304 7 NA NA . H 5 NA A 1 305 1 NA NA . I 5 NA A 1 306 8 NA NA . J 5 NA A 1 307 9 NA NA . K 4 GOL B 1 101 2 GOL GOL . L 6 SO4 B 1 102 1 SO4 SO4 . M 4 GOL C 1 101 1 GOL GOL . N 7 HOH A 1 401 98 HOH HOH . N 7 HOH A 2 402 262 HOH HOH . N 7 HOH A 3 403 212 HOH HOH . N 7 HOH A 4 404 177 HOH HOH . N 7 HOH A 5 405 47 HOH HOH . N 7 HOH A 6 406 82 HOH HOH . N 7 HOH A 7 407 130 HOH HOH . N 7 HOH A 8 408 254 HOH HOH . N 7 HOH A 9 409 176 HOH HOH . N 7 HOH A 10 410 222 HOH HOH . N 7 HOH A 11 411 27 HOH HOH . N 7 HOH A 12 412 73 HOH HOH . N 7 HOH A 13 413 173 HOH HOH . N 7 HOH A 14 414 68 HOH HOH . N 7 HOH A 15 415 182 HOH HOH . N 7 HOH A 16 416 224 HOH HOH . N 7 HOH A 17 417 28 HOH HOH . N 7 HOH A 18 418 32 HOH HOH . N 7 HOH A 19 419 114 HOH HOH . N 7 HOH A 20 420 92 HOH HOH . N 7 HOH A 21 421 118 HOH HOH . N 7 HOH A 22 422 155 HOH HOH . N 7 HOH A 23 423 174 HOH HOH . N 7 HOH A 24 424 44 HOH HOH . N 7 HOH A 25 425 140 HOH HOH . N 7 HOH A 26 426 6 HOH HOH . N 7 HOH A 27 427 156 HOH HOH . N 7 HOH A 28 428 121 HOH HOH . N 7 HOH A 29 429 242 HOH HOH . N 7 HOH A 30 430 230 HOH HOH . N 7 HOH A 31 431 99 HOH HOH . N 7 HOH A 32 432 48 HOH HOH . N 7 HOH A 33 433 51 HOH HOH . N 7 HOH A 34 434 53 HOH HOH . N 7 HOH A 35 435 111 HOH HOH . N 7 HOH A 36 436 79 HOH HOH . N 7 HOH A 37 437 107 HOH HOH . N 7 HOH A 38 438 205 HOH HOH . N 7 HOH A 39 439 42 HOH HOH . N 7 HOH A 40 440 14 HOH HOH . N 7 HOH A 41 441 109 HOH HOH . N 7 HOH A 42 442 26 HOH HOH . N 7 HOH A 43 443 43 HOH HOH . N 7 HOH A 44 444 123 HOH HOH . N 7 HOH A 45 445 25 HOH HOH . N 7 HOH A 46 446 50 HOH HOH . N 7 HOH A 47 447 40 HOH HOH . N 7 HOH A 48 448 34 HOH HOH . N 7 HOH A 49 449 24 HOH HOH . N 7 HOH A 50 450 195 HOH HOH . N 7 HOH A 51 451 116 HOH HOH . N 7 HOH A 52 452 74 HOH HOH . N 7 HOH A 53 453 103 HOH HOH . N 7 HOH A 54 454 23 HOH HOH . N 7 HOH A 55 455 105 HOH HOH . N 7 HOH A 56 456 196 HOH HOH . N 7 HOH A 57 457 21 HOH HOH . N 7 HOH A 58 458 295 HOH HOH . N 7 HOH A 59 459 294 HOH HOH . N 7 HOH A 60 460 37 HOH HOH . N 7 HOH A 61 461 16 HOH HOH . N 7 HOH A 62 462 108 HOH HOH . N 7 HOH A 63 463 138 HOH HOH . N 7 HOH A 64 464 5 HOH HOH . N 7 HOH A 65 465 179 HOH HOH . N 7 HOH A 66 466 45 HOH HOH . N 7 HOH A 67 467 66 HOH HOH . N 7 HOH A 68 468 67 HOH HOH . N 7 HOH A 69 469 189 HOH HOH . N 7 HOH A 70 470 78 HOH HOH . N 7 HOH A 71 471 125 HOH HOH . N 7 HOH A 72 472 131 HOH HOH . N 7 HOH A 73 473 110 HOH HOH . N 7 HOH A 74 474 255 HOH HOH . N 7 HOH A 75 475 9 HOH HOH . N 7 HOH A 76 476 148 HOH HOH . N 7 HOH A 77 477 258 HOH HOH . N 7 HOH A 78 478 83 HOH HOH . N 7 HOH A 79 479 97 HOH HOH . N 7 HOH A 80 480 249 HOH HOH . N 7 HOH A 81 481 102 HOH HOH . N 7 HOH A 82 482 75 HOH HOH . N 7 HOH A 83 483 22 HOH HOH . N 7 HOH A 84 484 96 HOH HOH . N 7 HOH A 85 485 117 HOH HOH . N 7 HOH A 86 486 198 HOH HOH . N 7 HOH A 87 487 30 HOH HOH . N 7 HOH A 88 488 183 HOH HOH . N 7 HOH A 89 489 162 HOH HOH . N 7 HOH A 90 490 293 HOH HOH . N 7 HOH A 91 491 69 HOH HOH . N 7 HOH A 92 492 270 HOH HOH . N 7 HOH A 93 493 46 HOH HOH . N 7 HOH A 94 494 13 HOH HOH . N 7 HOH A 95 495 77 HOH HOH . N 7 HOH A 96 496 113 HOH HOH . N 7 HOH A 97 497 203 HOH HOH . N 7 HOH A 98 498 175 HOH HOH . N 7 HOH A 99 499 3 HOH HOH . N 7 HOH A 100 500 18 HOH HOH . N 7 HOH A 101 501 190 HOH HOH . N 7 HOH A 102 502 94 HOH HOH . N 7 HOH A 103 503 165 HOH HOH . N 7 HOH A 104 504 277 HOH HOH . N 7 HOH A 105 505 252 HOH HOH . N 7 HOH A 106 506 260 HOH HOH . N 7 HOH A 107 507 221 HOH HOH . N 7 HOH A 108 508 56 HOH HOH . N 7 HOH A 109 509 38 HOH HOH . N 7 HOH A 110 510 181 HOH HOH . N 7 HOH A 111 511 147 HOH HOH . N 7 HOH A 112 512 115 HOH HOH . N 7 HOH A 113 513 88 HOH HOH . N 7 HOH A 114 514 146 HOH HOH . N 7 HOH A 115 515 232 HOH HOH . N 7 HOH A 116 516 57 HOH HOH . N 7 HOH A 117 517 81 HOH HOH . N 7 HOH A 118 518 164 HOH HOH . N 7 HOH A 119 519 284 HOH HOH . N 7 HOH A 120 520 216 HOH HOH . N 7 HOH A 121 521 185 HOH HOH . N 7 HOH A 122 522 76 HOH HOH . N 7 HOH A 123 523 187 HOH HOH . N 7 HOH A 124 524 119 HOH HOH . N 7 HOH A 125 525 112 HOH HOH . N 7 HOH A 126 526 151 HOH HOH . N 7 HOH A 127 527 17 HOH HOH . N 7 HOH A 128 528 90 HOH HOH . N 7 HOH A 129 529 129 HOH HOH . N 7 HOH A 130 530 55 HOH HOH . N 7 HOH A 131 531 85 HOH HOH . N 7 HOH A 132 532 168 HOH HOH . N 7 HOH A 133 533 239 HOH HOH . N 7 HOH A 134 534 197 HOH HOH . N 7 HOH A 135 535 54 HOH HOH . N 7 HOH A 136 536 158 HOH HOH . N 7 HOH A 137 537 208 HOH HOH . N 7 HOH A 138 538 71 HOH HOH . N 7 HOH A 139 539 279 HOH HOH . N 7 HOH A 140 540 52 HOH HOH . N 7 HOH A 141 541 100 HOH HOH . N 7 HOH A 142 542 126 HOH HOH . N 7 HOH A 143 543 12 HOH HOH . N 7 HOH A 144 544 62 HOH HOH . N 7 HOH A 145 545 142 HOH HOH . N 7 HOH A 146 546 291 HOH HOH . N 7 HOH A 147 547 297 HOH HOH . N 7 HOH A 148 548 267 HOH HOH . N 7 HOH A 149 549 171 HOH HOH . N 7 HOH A 150 550 61 HOH HOH . N 7 HOH A 151 551 144 HOH HOH . N 7 HOH A 152 552 219 HOH HOH . N 7 HOH A 153 553 153 HOH HOH . N 7 HOH A 154 554 253 HOH HOH . N 7 HOH A 155 555 163 HOH HOH . N 7 HOH A 156 556 135 HOH HOH . N 7 HOH A 157 557 132 HOH HOH . N 7 HOH A 158 558 286 HOH HOH . N 7 HOH A 159 559 236 HOH HOH . N 7 HOH A 160 560 59 HOH HOH . N 7 HOH A 161 561 49 HOH HOH . N 7 HOH A 162 562 172 HOH HOH . N 7 HOH A 163 563 282 HOH HOH . N 7 HOH A 164 564 145 HOH HOH . N 7 HOH A 165 565 127 HOH HOH . N 7 HOH A 166 566 150 HOH HOH . N 7 HOH A 167 567 211 HOH HOH . N 7 HOH A 168 568 226 HOH HOH . N 7 HOH A 169 569 15 HOH HOH . N 7 HOH A 170 570 215 HOH HOH . N 7 HOH A 171 571 186 HOH HOH . N 7 HOH A 172 572 220 HOH HOH . N 7 HOH A 173 573 193 HOH HOH . N 7 HOH A 174 574 8 HOH HOH . N 7 HOH A 175 575 280 HOH HOH . N 7 HOH A 176 576 204 HOH HOH . N 7 HOH A 177 577 273 HOH HOH . N 7 HOH A 178 578 202 HOH HOH . N 7 HOH A 179 579 234 HOH HOH . N 7 HOH A 180 580 287 HOH HOH . N 7 HOH A 181 581 161 HOH HOH . N 7 HOH A 182 582 160 HOH HOH . N 7 HOH A 183 583 289 HOH HOH . N 7 HOH A 184 584 124 HOH HOH . N 7 HOH A 185 585 290 HOH HOH . N 7 HOH A 186 586 225 HOH HOH . N 7 HOH A 187 587 235 HOH HOH . N 7 HOH A 188 588 188 HOH HOH . N 7 HOH A 189 589 292 HOH HOH . N 7 HOH A 190 590 285 HOH HOH . N 7 HOH A 191 591 104 HOH HOH . N 7 HOH A 192 592 209 HOH HOH . N 7 HOH A 193 593 133 HOH HOH . N 7 HOH A 194 594 241 HOH HOH . N 7 HOH A 195 595 178 HOH HOH . N 7 HOH A 196 596 154 HOH HOH . N 7 HOH A 197 597 265 HOH HOH . O 7 HOH B 1 201 152 HOH HOH . O 7 HOH B 2 202 29 HOH HOH . O 7 HOH B 3 203 70 HOH HOH . O 7 HOH B 4 204 139 HOH HOH . O 7 HOH B 5 205 229 HOH HOH . O 7 HOH B 6 206 31 HOH HOH . O 7 HOH B 7 207 80 HOH HOH . O 7 HOH B 8 208 200 HOH HOH . O 7 HOH B 9 209 122 HOH HOH . O 7 HOH B 10 210 170 HOH HOH . O 7 HOH B 11 211 63 HOH HOH . O 7 HOH B 12 212 223 HOH HOH . O 7 HOH B 13 213 20 HOH HOH . O 7 HOH B 14 214 36 HOH HOH . O 7 HOH B 15 215 210 HOH HOH . O 7 HOH B 16 216 7 HOH HOH . O 7 HOH B 17 217 95 HOH HOH . O 7 HOH B 18 218 120 HOH HOH . O 7 HOH B 19 219 35 HOH HOH . O 7 HOH B 20 220 4 HOH HOH . O 7 HOH B 21 221 19 HOH HOH . O 7 HOH B 22 222 283 HOH HOH . O 7 HOH B 23 223 10 HOH HOH . O 7 HOH B 24 224 91 HOH HOH . O 7 HOH B 25 225 87 HOH HOH . O 7 HOH B 26 226 180 HOH HOH . O 7 HOH B 27 227 231 HOH HOH . O 7 HOH B 28 228 41 HOH HOH . O 7 HOH B 29 229 106 HOH HOH . O 7 HOH B 30 230 275 HOH HOH . O 7 HOH B 31 231 58 HOH HOH . O 7 HOH B 32 232 65 HOH HOH . O 7 HOH B 33 233 101 HOH HOH . O 7 HOH B 34 234 86 HOH HOH . O 7 HOH B 35 235 84 HOH HOH . O 7 HOH B 36 236 89 HOH HOH . O 7 HOH B 37 237 251 HOH HOH . O 7 HOH B 38 238 33 HOH HOH . O 7 HOH B 39 239 263 HOH HOH . O 7 HOH B 40 240 192 HOH HOH . O 7 HOH B 41 241 274 HOH HOH . O 7 HOH B 42 242 149 HOH HOH . O 7 HOH B 43 243 214 HOH HOH . O 7 HOH B 44 244 276 HOH HOH . O 7 HOH B 45 245 184 HOH HOH . O 7 HOH B 46 246 271 HOH HOH . O 7 HOH B 47 247 167 HOH HOH . O 7 HOH B 48 248 137 HOH HOH . P 7 HOH C 1 201 191 HOH HOH . P 7 HOH C 2 202 93 HOH HOH . P 7 HOH C 3 203 240 HOH HOH . P 7 HOH C 4 204 201 HOH HOH . P 7 HOH C 5 205 134 HOH HOH . P 7 HOH C 6 206 296 HOH HOH . P 7 HOH C 7 207 278 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x -15.702 _atom_site.Cartn_y -15.208 _atom_site.Cartn_z 9.686 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #