data_6O52 # _model_server_result.job_id hVlJv0tCfhl_w7Pt-N1flA _model_server_result.datetime_utc '2024-11-18 03:25:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6O52 # _exptl.entry_id 6O52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(5-{4-[DIMETHYL(PROP-2-ENYL)AMMONIO]PHENYL}-3-OXOPENTYL)-N,N-DIMETHYL-N-PROP-2-ENYLBENZENAMINIUM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O52 _cell.length_a 125.434 _cell.length_b 125.434 _cell.length_c 130.592 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x+y,-x,z-1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 -43.530667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 69 1_555 A SG CYS 99 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 260 A CYS 257 1_555 A SG CYS 275 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 412 A CYS 409 1_555 A SG CYS 532 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 72 B CYS 69 1_555 B SG CYS 99 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 260 B CYS 257 1_555 B SG CYS 275 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 B SG CYS 412 B CYS 409 1_555 B SG CYS 532 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C27 H38 N2 O 2' _chem_comp.formula_weight 406.603 _chem_comp.id EBW _chem_comp.mon_nstd_flag . _chem_comp.name 4-(5-{4-[DIMETHYL(PROP-2-ENYL)AMMONIO]PHENYL}-3-OXOPENTYL)-N,N-DIMETHYL-N-PROP-2-ENYLBENZENAMINIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EBW sing 83 n n C1 C5 EBW sing 84 n n C1 O1 EBW doub 85 n n C2 C6 EBW sing 86 n n C2 H22 EBW sing 87 n n C2 H21 EBW sing 88 n n C5 C13 EBW sing 89 n n C5 H52 EBW sing 90 n n C5 H51 EBW sing 91 n n C6 C7 EBW sing 92 n n C6 H62 EBW sing 93 n n C6 H61 EBW sing 94 n n C7 C8 EBW doub 95 n y C7 C12 EBW sing 96 n y C8 C9 EBW sing 97 n y C8 H8 EBW sing 98 n n C9 C10 EBW doub 99 n y C9 H9 EBW sing 100 n n C10 C11 EBW sing 101 n y C10 N2 EBW sing 102 n n C11 C12 EBW doub 103 n y C11 H11 EBW sing 104 n n N1 C17 EBW sing 105 n n N1 C20 EBW sing 106 n n N1 C21 EBW sing 107 n n N1 C22 EBW sing 108 n n N2 C24 EBW sing 109 n n N2 C25 EBW sing 110 n n N2 C26 EBW sing 111 n n C12 H12 EBW sing 112 n n C13 C14 EBW sing 113 n n C13 H132 EBW sing 114 n n C13 H131 EBW sing 115 n n C14 C15 EBW doub 116 n y C14 C19 EBW sing 117 n y C15 C16 EBW sing 118 n y C15 H15 EBW sing 119 n n C16 C17 EBW doub 120 n y C16 H16 EBW sing 121 n n C17 C18 EBW sing 122 n y C18 C19 EBW doub 123 n y C18 H18 EBW sing 124 n n C19 H19 EBW sing 125 n n C20 H203 EBW sing 126 n n C20 H202 EBW sing 127 n n C20 H201 EBW sing 128 n n C21 H213 EBW sing 129 n n C21 H212 EBW sing 130 n n C21 H211 EBW sing 131 n n C22 C23 EBW sing 132 n n C22 H222 EBW sing 133 n n C22 H221 EBW sing 134 n n C23 C29 EBW doub 135 n n C23 H23 EBW sing 136 n n C24 C27 EBW sing 137 n n C24 H242 EBW sing 138 n n C24 H241 EBW sing 139 n n C25 H253 EBW sing 140 n n C25 H252 EBW sing 141 n n C25 H251 EBW sing 142 n n C26 H263 EBW sing 143 n n C26 H262 EBW sing 144 n n C26 H261 EBW sing 145 n n C27 C28 EBW doub 146 n n C27 H27 EBW sing 147 n n C28 H282 EBW sing 148 n n C28 H281 EBW sing 149 n n C29 H292 EBW sing 150 n n C29 H291 EBW sing 151 n n # _atom_sites.entry_id 6O52 _atom_sites.fract_transf_matrix[1][1] 0.007972 _atom_sites.fract_transf_matrix[1][2] 0.004603 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EBW A 1 601 550 EBW EBW . D 2 EBW B 1 601 551 EBW EBW . E 3 HOH A 1 701 7 HOH HOH . E 3 HOH A 2 702 26 HOH HOH . E 3 HOH A 3 703 48 HOH HOH . E 3 HOH A 4 704 13 HOH HOH . E 3 HOH A 5 705 1 HOH HOH . E 3 HOH A 6 706 31 HOH HOH . E 3 HOH A 7 707 9 HOH HOH . E 3 HOH A 8 708 47 HOH HOH . E 3 HOH A 9 709 38 HOH HOH . E 3 HOH A 10 710 29 HOH HOH . E 3 HOH A 11 711 43 HOH HOH . E 3 HOH A 12 712 35 HOH HOH . E 3 HOH A 13 713 30 HOH HOH . F 3 HOH B 1 701 45 HOH HOH . F 3 HOH B 2 702 2 HOH HOH . F 3 HOH B 3 703 8 HOH HOH . F 3 HOH B 4 704 22 HOH HOH . F 3 HOH B 5 705 25 HOH HOH . F 3 HOH B 6 706 28 HOH HOH . F 3 HOH B 7 707 46 HOH HOH . F 3 HOH B 8 708 37 HOH HOH . F 3 HOH B 9 709 6 HOH HOH . F 3 HOH B 10 710 11 HOH HOH . F 3 HOH B 11 711 19 HOH HOH . F 3 HOH B 12 712 24 HOH HOH . F 3 HOH B 13 713 34 HOH HOH . F 3 HOH B 14 714 49 HOH HOH . F 3 HOH B 15 715 21 HOH HOH . F 3 HOH B 16 716 15 HOH HOH . F 3 HOH B 17 717 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EBW . . . C 2 5.469 33.404 -9.575 1 48.47 ? C1 EBW 601 A 1 HETATM 2 C C2 EBW . . . C 2 4.794 33.488 -8.226 1 40.79 ? C2 EBW 601 A 1 HETATM 3 C C5 EBW . . . C 2 6.262 34.577 -10.112 1 47.06 ? C5 EBW 601 A 1 HETATM 4 C C6 EBW . . . C 2 3.578 32.589 -8.186 1 52.46 ? C6 EBW 601 A 1 HETATM 5 C C7 EBW . . . C 2 2.942 32.547 -6.816 1 63.26 ? C7 EBW 601 A 1 HETATM 6 C C8 EBW . . . C 2 2.945 31.364 -6.095 1 74.6 ? C8 EBW 601 A 1 HETATM 7 C C9 EBW . . . C 2 2.366 31.322 -4.838 1 63.85 ? C9 EBW 601 A 1 HETATM 8 C C10 EBW . . . C 2 1.779 32.459 -4.31 1 55.11 ? C10 EBW 601 A 1 HETATM 9 C C11 EBW . . . C 2 1.779 33.643 -5.028 1 49.07 ? C11 EBW 601 A 1 HETATM 10 N N1 EBW . . . C 2 8.219 39.794 -13.407 1 42.58 ? N1 EBW 601 A 1 HETATM 11 N N2 EBW . . . C 2 1.198 32.414 -3.019 1 63.67 ? N2 EBW 601 A 1 HETATM 12 C C12 EBW . . . C 2 2.36 33.687 -6.284 1 51.99 ? C12 EBW 601 A 1 HETATM 13 C C13 EBW . . . C 2 5.61 35.15 -11.353 1 44.53 ? C13 EBW 601 A 1 HETATM 14 C C14 EBW . . . C 2 6.307 36.379 -11.897 1 47.97 ? C14 EBW 601 A 1 HETATM 15 C C15 EBW . . . C 2 6.208 37.586 -11.223 1 49.73 ? C15 EBW 601 A 1 HETATM 16 C C16 EBW . . . C 2 6.842 38.715 -11.723 1 51.33 ? C16 EBW 601 A 1 HETATM 17 C C17 EBW . . . C 2 7.573 38.636 -12.9 1 51.18 ? C17 EBW 601 A 1 HETATM 18 C C18 EBW . . . C 2 7.668 37.428 -13.575 1 46.78 ? C18 EBW 601 A 1 HETATM 19 C C19 EBW . . . C 2 7.035 36.304 -13.073 1 43.1 ? C19 EBW 601 A 1 HETATM 20 C C20 EBW . . . C 2 8.841 39.5 -14.648 1 43.56 ? C20 EBW 601 A 1 HETATM 21 C C21 EBW . . . C 2 7.251 40.818 -13.579 1 44.92 ? C21 EBW 601 A 1 HETATM 22 C C22 EBW . . . C 2 9.211 40.212 -12.483 1 39.22 ? C22 EBW 601 A 1 HETATM 23 C C23 EBW . . . C 2 10.133 39.062 -12.144 1 50.77 ? C23 EBW 601 A 1 HETATM 24 C C24 EBW . . . C 2 2.036 33.181 -2.165 1 63.75 ? C24 EBW 601 A 1 HETATM 25 C C25 EBW . . . C 2 1.146 31.067 -2.574 1 71.28 ? C25 EBW 601 A 1 HETATM 26 C C26 EBW . . . C 2 -0.113 32.958 -3.051 1 51.28 ? C26 EBW 601 A 1 HETATM 27 C C27 EBW . . . C 2 2.121 32.593 -0.773 1 98.8 ? C27 EBW 601 A 1 HETATM 28 C C28 EBW . . . C 2 3.212 32.829 -0.014 1 99.14 ? C28 EBW 601 A 1 HETATM 29 C C29 EBW . . . C 2 11.092 39.219 -11.209 1 56.33 ? C29 EBW 601 A 1 HETATM 30 O O1 EBW . . . C 2 5.368 32.383 -10.225 1 55.51 ? O1 EBW 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 30 #